cluster # 3007

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Anopheles gambiae
cluster # 3007 cluster # 3007 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3007#0 length = 920 sequences # 1

consensus_3007#1 length = 608 sequences # 1

consensusID : consensus_3007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 920
fasta sequence

                              [GGCAAGAATCGCGCACGAGGCGCAACTTTACCGATGTCAATTCGGCCATTGAGATAGCGGCGGCTGGCCCGGGTGTGTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTTACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGCTGTATGCGATGGTCGGTGCAGCCGCCGTGCTTGGCGGGGTCACCAGAATGACGGTGTCCCTTGTGGTTATTATGTTCGAGCTAACCGGCGGTGTCCGATACATCGTGCCGCTGATGGCGGCAGCCATGGCTTCCAAATGGGTTGGCGATGCCCTTGGTCGACAGGGCATTTACGATGCGCACATAGCGCTGAACGGTTATCCGTTCCTGGACAGCAAGGACGAATTCCAGCACACAACGCTAAGCGGCCGATGTGATGCAGCCAAAACGGCAATGAAACGCTGGCGGTGATCACTCAGGACTCGATGACGGTGGGACGACAATCGAGGACCTACTCAAAGAGACTGGAAGCACAACGGCTACCCGGTGGGTCGTNTTCCGAAGGAGCAATCAATTACTTTGGGTTCGGCTTCCGTGCTTGCGAAGGGATCTAAANTCCTAAGCCTTTAGGCTTAATTNGCGGCTGAAAGGCCATTCCATTTGGANCGGGGGCATTCACTTTGGGCNCCANGTACNCGCNGGGTAAATCCNTTCGCAACNATTCAGGGCCCGAAACCGGGTCCCAANAACCTTGGGGCCCCGAGGTCAGCCCAGAGTTGAAGAAGTTGAGAGAGA]

[+] EMBL BX467465             [GGCAAGAATCGCGCACGAGGCGCAACTTTACCGATGTCAATTCGGCCATTGAGATAGCGGCGGCTGGCCCGGGTGTGTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTTACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGCTGTATGCGATGGTCGGTGCAGCCGCCGTGCTTGGCGGGGTCACCAGAATGACGGTGTCCCTTGTGGTTATTATGTTCGAGCTAACCGGCGGTGTCCGATACATCGTGCCGCTGATGGCGGCAGCCATGGCTTCCAAATGGGTTGGCGATGCCCTTGGTCGACAGGGCATTTACGATGCGCACATAGCGCTGAACGGTTATCCGTTCCTGGACAGCAAGGACGAATTCCAGCACACAACGCTAAGCGGCCGATGTGATGCAGCCAAAACGGCAATGAAACGCTGGCGGTGATCACTCAGGACTCGATGACGGTGGGACGACAATCGAGGACCTACTCAAAGAGACTGGAAGCACAACGGCTACCCGGTGGGTCGTNTTCCGAAGGAGCAATCAATTACTTTGGGTTCGGCTTCCGTGCTTGCGAAGGGATCTAAANTCCTAAGCCTTTAGGCTTAATTNGCGGCTGAAAGGCCATTCCATTTGGANCGGGGGCATTCACTTTGGGCNCCANGTACNCGCNGGGTAAATCCNTTCGCAACNATTCAGGGCCCGAAACCGGGTCCCAANAACCTTGGGGCCCCGAGGTCAGCCCAGAGTTGAAGAAGTTGAGAGAGA]




>consensus_3007#0
GGCAAGAATCGCGCACGAGGCGCAACTTTACCGATGTCAATTCGGCCATTGAGATAGCGG
CGGCTGGCCCGGGTGTGTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGC
TCATCATGACGATCTTTACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCC
TTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACA
ACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGC
CGGGGCTGTATGCGATGGTCGGTGCAGCCGCCGTGCTTGGCGGGGTCACCAGAATGACGG
TGTCCCTTGTGGTTATTATGTTCGAGCTAACCGGCGGTGTCCGATACATCGTGCCGCTGA
TGGCGGCAGCCATGGCTTCCAAATGGGTTGGCGATGCCCTTGGTCGACAGGGCATTTACG
ATGCGCACATAGCGCTGAACGGTTATCCGTTCCTGGACAGCAAGGACGAATTCCAGCACA
CAACGCTAAGCGGCCGATGTGATGCAGCCAAAACGGCAATGAAACGCTGGCGGTGATCAC
TCAGGACTCGATGACGGTGGGACGACAATCGAGGACCTACTCAAAGAGACTGGAAGCACA
ACGGCTACCCGGTGGGTCGTNTTCCGAAGGAGCAATCAATTACTTTGGGTTCGGCTTCCG
TGCTTGCGAAGGGATCTAAANTCCTAAGCCTTTAGGCTTAATTNGCGGCTGAAAGGCCAT
TCCATTTGGANCGGGGGCATTCACTTTGGGCNCCANGTACNCGCNGGGTAAATCCNTTCG
CAACNATTCAGGGCCCGAAACCGGGTCCCAANAACCTTGGGGCCCCGAGGTCAGCCCAGA
GTTGAAGAAGTTGAGAGAGA

consensusID : consensus_3007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [CCGCAACGAGCACTCGGTGCTGTTCTACGTGGAGTACAACAAACCGTGGATCTTCTTCGAGCTGGTACCATTTATCGGGCTGGGCATTATTGGGGGCATCATTGCGACGCTATTTATCAAGGCGAACCTTTGGTGGTGCCGGTTCCGCAAGTACAGCAAGCTTGGCCAGTACCCAGTGACGGAGGTGCTGATCGTCACGTTCATTACCGCGGTTATTGCGTACCCCAATCCGTACACGCGCATGAACACGAGCGAGCTGATCTATCTCCTCTTCAGCCAGTGCGGCATCTCGAACCAGGATCCGTTGTGTGACTACAATCGCAACTTTACCGATGTCAATTCGGCCATAGAGATAGCGGCGGCCGGGCCGGGCGTCTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTCACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGTTGT]

[+] EMBL BM578307             [CCGCAACGAGCACTCGGTGCTGTTCTACGTGGAGTACAACAAACCGTGGATCTTCTTCGAGCTGGTACCATTTATCGGGCTGGGCATTATTGGGGGCATCATTGCGACGCTATTTATCAAGGCGAACCTTTGGTGGTGCCGGTTCCGCAAGTACAGCAAGCTTGGCCAGTACCCAGTGACGGAGGTGCTGATCGTCACGTTCATTACCGCGGTTATTGCGTACCCCAATCCGTACACGCGCATGAACACGAGCGAGCTGATCTATCTCCTCTTCAGCCAGTGCGGCATCTCGAACCAGGATCCGTTGTGTGACTACAATCGCAACTTTACCGATGTCAATTCGGCCATAGAGATAGCGGCGGCCGGGCCGGGCGTCTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTCACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGTTGT]




>consensus_3007#1
CCGCAACGAGCACTCGGTGCTGTTCTACGTGGAGTACAACAAACCGTGGATCTTCTTCGA
GCTGGTACCATTTATCGGGCTGGGCATTATTGGGGGCATCATTGCGACGCTATTTATCAA
GGCGAACCTTTGGTGGTGCCGGTTCCGCAAGTACAGCAAGCTTGGCCAGTACCCAGTGAC
GGAGGTGCTGATCGTCACGTTCATTACCGCGGTTATTGCGTACCCCAATCCGTACACGCG
CATGAACACGAGCGAGCTGATCTATCTCCTCTTCAGCCAGTGCGGCATCTCGAACCAGGA
TCCGTTGTGTGACTACAATCGCAACTTTACCGATGTCAATTCGGCCATAGAGATAGCGGC
GGCCGGGCCGGGCGTCTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCT
CATCATGACGATCTTCACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCT
TGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAA
CTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCC
GGGGTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3007#0      GGCAAGAATCGCGCACGAGGCGCAACTTTACCGATGTCAATTCGGCCATTGAGATAGCGG 60
consensus_3007#1      ------------------------------------------------------------
                                                                                  

consensus_3007#0      CGGCTGGCCCGGGTGTGTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGC 120
consensus_3007#1      ------------------------------------------------------------
                                                                                  

consensus_3007#0      TCATCATGACGATCTTTACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCC 180
consensus_3007#1      ------------------------------------------------------------
                                                                                  

consensus_3007#0      TTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACA 240
consensus_3007#1      ----------------------CCGCAACGAGCACTCGGTGCTGTTCTACGTGGAGTACA 38
                                            *** * **    *   * * **    *  *** *****

consensus_3007#0      ACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGC 300
consensus_3007#1      AC------AAACCGTGGATCTTCTTCGAG-----------CTGGTACCATT-TATCGGGC 80
                      **      ***   **********  * *           * ** ** ***  **   **

consensus_3007#0      CGGGGCTGTATGCGATGGTCGGTGCAGCCGCCGTGCTTGGCGGGGTCACCAGAATGACGG 360
consensus_3007#1      TGGGCATTATTGGGGGCATCATTGC-GACGC--TATTTATCAAGGCGAACCTT-TGGTGG 136
                       ***  *   ** *    **  *** * ***  *  **  *  **  * *    **  **

consensus_3007#0      TGTCCCTTGTGGTTATTATGTTCGAGCTAACCGGCGGTGTCCGATACATCGTGCCGCTGA 420
consensus_3007#1      TGCCGGTTCCG-----CAAGTAC-AGCAAGCT-----TGGCCAGTACCCAGTGACGGAGG 185
                      ** *  **  *      * ** * *** * *      ** **  ***   *** **  * 

consensus_3007#0      TGGCGGCAGCCATGGCTTCCAAATGGGTTGGCGATGCCCTTGGTCGACAGGGCATTTACG 480
consensus_3007#1      TGCTGATCGTCACGTTCATTACCGCGGTTATTGCGTACCCCAATCCGTA---CACGCGC- 241
                      **  *   * ** *      *    ****   *    **    **   *   **    * 

consensus_3007#0      ATGCGCACATA-GCGCTGAACGGTTATCCGTTCCTGGACAGCAAGGACGAATTCCAGCAC 539
consensus_3007#1      ATGAACACGAGCGAGCTGATC---TATCTCCTCTT---CAGCCAGTGCGG---------- 285
                      ***  ***    * ***** *   ****   ** *   **** **  **           

consensus_3007#0      ACAACGCTAAGCGGCCGATGTGATGCAGCCAAAACGGCAATGAAACGCTGGCGGTGATCA 599
consensus_3007#1      -CATCTCGAACCAGGATCCGTTGTGTGACTACAATCGC-----AACTTTACCGATG-TCA 338
                       ** * * ** * *     **  **   * * **  **     ***  *  ** ** ***

consensus_3007#0      CTCAGGACTCGATGACGGTGGGACGACAATCGAGGACCTACTCAAAGAGACTGGAAGCAC 659
consensus_3007#1      ATTCGGCCATAGAGATAGCGGCGGCCGGGCCGGGCGTCTACA-AAGCCGTGTGGCTGC-T 396
                       *  ** *     **  * **         ** *   ****  **   *  ***  **  

consensus_3007#0      AACGGCTACCCGGTGGGTCGTNTTCCGAAGGAGCAATCAATTACTTTGGGTTCGGCTTCC 719
consensus_3007#1      AATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTCACGTTTGGCATGAAGGTACC 456
                      **      ***    * *     **   * **  *         ** *  *   * * **

consensus_3007#0      GTGCTTGCGAAGGGATCTAAANTCCTAAGCCTTTAGGCTTAATTNGCGGCTGAAAGGCCA 779
consensus_3007#1      GTGC-------GGGTTGTTCATTCCT--TCCCTTGCACTCGGT--GCCATT-ACGGGCCG 504
                      ****       *** * *  * ****   ** **   **   *  **   * *  **** 

consensus_3007#0      TTCCATTTGGANCGGGGGCATTCACTTTGGGCNCCANGTACNCGCNGGGTAAATCCNTTC 839
consensus_3007#1      TATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTC 564
                      *  * ** * *  * *      **  * * *  * *    * *      *  ***   **

consensus_3007#0      GCAACNATTCAGGGCCCGAAACCGGGTCCCAANAACCTTGGGGCCCCGAGGTCAGCCCAG 899
consensus_3007#1      TGGGGAGTGTTCCACCGGGGAC--GATTGCATTA-CGCCGGGGTTGT------------- 608
                             *      ** *  **  * *  **  * *   ****                 

consensus_3007#0      AGTTGAAGAAGTTGAGAGAGA 920
consensus_3007#1      ---------------------