cluster # 3024

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Anopheles gambiae
cluster # 3024 cluster # 3024 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3024#0 length = 540 sequences # 1

consensus_3024#1 length = 508 sequences # 1

consensusID : consensus_3024#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CCAGAATCGCCACGAGGTNTATTTTTTTTTTTCCCTTCGAGCAGAGAAAGTTTGTTTATTTTTCAACATAAATACTTTAACGGGAGATAATTACTGCTACTACTACTATGCATTCGCTTGTTGTGATGCTGGTACAAGGTAAGGAATGATAAATTACTATTTCTTCTTTCTATCGGATCGATCCGGTATGTAAATGGAACTGTCTTTACGCTTTCTACTAGCTGGCATATGCCTCTACTACTGGATGCTTTCTGGTAAATAGTGCCAAGATTCTATTCGAAATATATATTTATTACTACGAACCGCGCGGACTTCGCTACTCCTTTAGCCGTTACATTTACGCCGCCGGTCCCGCATATGGCGATTGTTGTTCTTTTGTTTATTTCATTTATAAGTTAGCTCATTTTAAATTGTGTGTATACCTAAGGGATATTTCGGTAATAAGTTTTTAATTGTTTCTTATATCCTTTTGCTTCATAGTAAGGCTAGTTCCAGATAATTGCTTTAAGTGTGGAAGATATCGAAAAATGTCCGATCTTA]

[+] EMBL BX466242             [CCAGAATCGCCACGAGGTNTATTTTTTTTTTTCCCTTCGAGCAGAGAAAGTTTGTTTATTTTTCAACATAAATACTTTAACGGGAGATAATTACTGCTACTACTACTATGCATTCGCTTGTTGTGATGCTGGTACAAGGTAAGGAATGATAAATTACTATTTCTTCTTTCTATCGGATCGATCCGGTATGTAAATGGAACTGTCTTTACGCTTTCTACTAGCTGGCATATGCCTCTACTACTGGATGCTTTCTGGTAAATAGTGCCAAGATTCTATTCGAAATATATATTTATTACTACGAACCGCGCGGACTTCGCTACTCCTTTAGCCGTTACATTTACGCCGCCGGTCCCGCATATGGCGATTGTTGTTCTTTTGTTTATTTCATTTATAAGTTAGCTCATTTTAAATTGTGTGTATACCTAAGGGATATTTCGGTAATAAGTTTTTAATTGTTTCTTATATCCTTTTGCTTCATAGTAAGGCTAGTTCCAGATAATTGCTTTAAGTGTGGAAGATATCGAAAAATGTCCGATCTTA]




>consensus_3024#0
CCAGAATCGCCACGAGGTNTATTTTTTTTTTTCCCTTCGAGCAGAGAAAGTTTGTTTATT
TTTCAACATAAATACTTTAACGGGAGATAATTACTGCTACTACTACTATGCATTCGCTTG
TTGTGATGCTGGTACAAGGTAAGGAATGATAAATTACTATTTCTTCTTTCTATCGGATCG
ATCCGGTATGTAAATGGAACTGTCTTTACGCTTTCTACTAGCTGGCATATGCCTCTACTA
CTGGATGCTTTCTGGTAAATAGTGCCAAGATTCTATTCGAAATATATATTTATTACTACG
AACCGCGCGGACTTCGCTACTCCTTTAGCCGTTACATTTACGCCGCCGGTCCCGCATATG
GCGATTGTTGTTCTTTTGTTTATTTCATTTATAAGTTAGCTCATTTTAAATTGTGTGTAT
ACCTAAGGGATATTTCGGTAATAAGTTTTTAATTGTTTCTTATATCCTTTTGCTTCATAG
TAAGGCTAGTTCCAGATAATTGCTTTAAGTGTGGAAGATATCGAAAAATGTCCGATCTTA

consensusID : consensus_3024#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [CATATTTAACTCCTTAACAACACGACAACCTAAACAAACGTGAAACGAAAACTCCAAACTAGTAATAGCGTAAAGGAAACTAATATGTAATGAATTTTAAAATCGCTTCCTTCTCGTGCGCTTCCAACTCGTTAAAGAGAGAGAAAGGAGAGAATTAAGTAAATGAAAATAGGAGCAAATTAAAATAACTCTCTGGCCCTCAACCGCGCAGTGCGTCCACAGTGTGTGTGTGTGCGAGGGCACTGCGGAGAGTGGCGTTGTAGATCGGACATTTTTCGATATCTTCCACACTTAAAGCAATTATCTGGGAACCTAGCCTTACTATGAAGAAAACAAAAAACAGAACGCAGGGCATTGTTTGGCGGGGCCGCAAAGNTTANTTCCCCCTTAGTNAGGGGGTTAACATTTTANCCTTTGGGCACTNTGGGNCGTNGACGTTTTANAACACGTCCGNACTGGGAAAAACCCGTGGGTTATACCCCAACNTTAAGCGGCTNTGCGAGAANCC]

[+] EMBL BX467655             [CATATTTAACTCCTTAACAACACGACAACCTAAACAAACGTGAAACGAAAACTCCAAACTAGTAATAGCGTAAAGGAAACTAATATGTAATGAATTTTAAAATCGCTTCCTTCTCGTGCGCTTCCAACTCGTTAAAGAGAGAGAAAGGAGAGAATTAAGTAAATGAAAATAGGAGCAAATTAAAATAACTCTCTGGCCCTCAACCGCGCAGTGCGTCCACAGTGTGTGTGTGTGCGAGGGCACTGCGGAGAGTGGCGTTGTAGATCGGACATTTTTCGATATCTTCCACACTTAAAGCAATTATCTGGGAACCTAGCCTTACTATGAAGAAAACAAAAAACAGAACGCAGGGCATTGTTTGGCGGGGCCGCAAAGNTTANTTCCCCCTTAGTNAGGGGGTTAACATTTTANCCTTTGGGCACTNTGGGNCGTNGACGTTTTANAACACGTCCGNACTGGGAAAAACCCGTGGGTTATACCCCAACNTTAAGCGGCTNTGCGAGAANCC]




>consensus_3024#1
CATATTTAACTCCTTAACAACACGACAACCTAAACAAACGTGAAACGAAAACTCCAAACT
AGTAATAGCGTAAAGGAAACTAATATGTAATGAATTTTAAAATCGCTTCCTTCTCGTGCG
CTTCCAACTCGTTAAAGAGAGAGAAAGGAGAGAATTAAGTAAATGAAAATAGGAGCAAAT
TAAAATAACTCTCTGGCCCTCAACCGCGCAGTGCGTCCACAGTGTGTGTGTGTGCGAGGG
CACTGCGGAGAGTGGCGTTGTAGATCGGACATTTTTCGATATCTTCCACACTTAAAGCAA
TTATCTGGGAACCTAGCCTTACTATGAAGAAAACAAAAAACAGAACGCAGGGCATTGTTT
GGCGGGGCCGCAAAGNTTANTTCCCCCTTAGTNAGGGGGTTAACATTTTANCCTTTGGGC
ACTNTGGGNCGTNGACGTTTTANAACACGTCCGNACTGGGAAAAACCCGTGGGTTATACC
CCAACNTTAAGCGGCTNTGCGAGAANCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3024#0      CCAGAATCGCCACGAGGTNTATTTTTTTTTTTCCCTTCGAGCAGAGAAAGTTTG---TTT 57
consensus_3024#1      ------------CATATTTAACTCCTTAACAACACGACAACCTAAACAAACGTGAAACGA 48
                                  *    *  * *  **     * *  * * *  *  **   **      

consensus_3024#0      ATTTTTCAACATA--AATACTTTAACGGGAGATAAT-TACTGCTACTACTACTATGCATT 114
consensus_3024#1      AAACTCCAAACTAGTAATAGCGTAAAGGAAACTAATATGTAATGAATTTTAAAAT-CGCT 107
                      *   * ***  **  ****   *** ** *  **** *      * *  **  ** *  *

consensus_3024#0      CGCTTGTTGTGATGCTGGTACAAGGTAAGGAATGATAAATTACTATTTCTTCTTTCTATC 174
consensus_3024#1      TCCTTCTCGTGCGCTTCCAACTCGTTAAAGAGAGAGAAAGGAGAGAA-------TTAAGT 160
                        *** * ***    *   **  * *** **  ** ***  *            *  *  

consensus_3024#0      GGATCGATCCGGTATGTAAATGGAACTGTCTTTACGCTTTCTACTAGCTGGCATATGCCT 234
consensus_3024#1      AAATGAAAATAGGA-GCAAATTAAAATAACTCTCTGGCCCTCAACCGC--GCA-GTGCGT 216
                        **  *    * * * ****  ** *  ** *  *      *   **  ***  *** *

consensus_3024#0      CTACTACTGGATGCTTTCTGGTAAATAGTGCCAAGATT--CTATTCGAAATATATATTTA 292
consensus_3024#1      CCAC-AGTGTGTGTGTGTGCGAGGGCACTGCGGAGAGTGGCGTTGTAGATCGGACATTTT 275
                      * ** * **  **  *    *     * ***  *** *  *  *    *    * **** 

consensus_3024#0      TTACTACGAACCGCGCGGACTTCGCTACTCCTTTAGCCGTTACAT-TTACGCCGCCGGTC 351
consensus_3024#1      TCGATATCTTCCACACTTAAAGCAATTATCTGGGAACCTAGCCTTACTATGAAGAAAACA 335
                      *   **    ** * *  *   *  *  **    * **    * *  ** *  *      

consensus_3024#0      CCGCATATGGCGATTGTTGTTCTTTTGTTTATTTCATTTATAAGTTAGCTCATTTTAAAT 411
consensus_3024#1      AAAAACAGAACGCAGGGCATTGTTTGGCGGGGCC---GCAAAGNTTANTTCCCCCTTAGT 392
                          * *   **   *   ** *** *            * *  ***  **    * * *

consensus_3024#0      TGTGTGTATACCTAAGGGATATTTCGGTAATA-AGTTTTTAATTGTTTCTTATATCCTTT 470
consensus_3024#1      NAGGGGGTTAACATTTTANCCTTTGGGCACTNTGGGNCGTNGACGTT--TTANAACACGT 450
                         * *  ** *         *** ** * *   *    *    ***  *** * *   *

consensus_3024#0      TGCTTCATAGTAAGGCTAGTTCCAGATAATTGCTTTAAGTGTGGAAGATATCGAAAAATG 530
consensus_3024#1      CCGNACTGGGAAAAACCCGT---GGGTTAT-ACCCCAACNTTAAGCGGCTNTGCGAGAAN 506
                           *   * **  *  **    * * **  *   **   *    *     *  * *  

consensus_3024#0      TCCGATCTTA 540
consensus_3024#1      CC-------- 508
                       *