cluster # 303

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Anopheles gambiae
cluster # 303 cluster # 303 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_303#0 length = 675 sequences # 1

consensus_303#1 length = 635 sequences # 1

consensusID : consensus_303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [CCGCGGACGCGTGGGTTTTTTTTCCGGCATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGTGTGTACATTTATAATGGAATCCCCAAC]

[+] EMBL BM575499             [CCGCGGACGCGTGGGTTTTTTTTCCGGCATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGTGTGTACATTTATAATGGAATCCCCAAC]




>consensus_303#0
CCGCGGACGCGTGGGTTTTTTTTCCGGCATCGTGTATGCTAGCTGGACACATTTTGTTTA
AGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAA
GAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGC
GAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCG
TGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAG
CTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCA
GCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTT
CTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGG
AAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAA
CAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCG
CATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGTGTGTACATTTAT
AATGGAATCCCCAAC

consensusID : consensus_303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCGGACGCGTGGGATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGT]

[+] EMBL BM608525             [CCGCGGACGCGTGGGATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGT]




>consensus_303#1
CCGCGGACGCGTGGGATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATC
ATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCA
AAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCG
AAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCG
AAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTG
TGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCAC
GCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAG
CGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAG
TCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTT
CGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATG
CTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_303#0      CCGCGGACGCGTGGGTTTTTTTTCCGGCATCGTGTATGCTAGCTGGACACATTTTGTTTA 60
consensus_303#1      CCGCGGACGCGTGGG-------------ATCGTGTATGCTAGCTGGACACATTTTGTTTA 47
                     ***************             ********************************

consensus_303#0      AGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAA 120
consensus_303#1      AGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAA 107
                     ************************************************************

consensus_303#0      GAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGC 180
consensus_303#1      GAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGC 167
                     ************************************************************

consensus_303#0      GAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCG 240
consensus_303#1      GAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCG 227
                     ************************************************************

consensus_303#0      TGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAG 300
consensus_303#1      TGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAG 287
                     ************************************************************

consensus_303#0      CTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCA 360
consensus_303#1      CTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCA 347
                     ************************************************************

consensus_303#0      GCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTT 420
consensus_303#1      GCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTT 407
                     ************************************************************

consensus_303#0      CTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGG 480
consensus_303#1      CTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGG 467
                     ************************************************************

consensus_303#0      AAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAA 540
consensus_303#1      AAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAA 527
                     ************************************************************

consensus_303#0      CAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCG 600
consensus_303#1      CAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCG 587
                     ************************************************************

consensus_303#0      CATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGTGTGTACATTTAT 660
consensus_303#1      CATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGT------------ 635
                     ************************************************            

consensus_303#0      AATGGAATCCCCAAC 675
consensus_303#1      ---------------