cluster # 3033

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Anopheles gambiae
cluster # 3033 cluster # 3033 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3033#0 length = 481 sequences # 1

consensus_3033#1 length = 458 sequences # 1

consensusID : consensus_3033#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [GGCAAGAATTCGGCACGNTGGGGAGTGGCTTGTTTGCGACACCGGCCGGTCGTAGAAAGCTGCAAGAATCGGCCAAGTTTGATCGACTTGCAATCGTAACGCTTCACCGGGGACACGTGTACACCGATCTGGAAGCGGTCAAGGCGGAACTAGCGGAGAGTGTAAAATCACTCGCACCACAACAAGTGTTGCAGAGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCCGGGAAACGATCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACGTGGTGGAGGAGATTGCCGGCGAGAATGGGCGCCTGTTCCGGCGGCTCGTCTTCCTCTCCAACCAAGCGGTGGTACAGTCGGAGGCGGCACTCAAAATGGCCCGCGTGCGTGGCAGCCGTGCGCCACAGAAGGTGATCGATGCGGGCTATCTGGCCTGNCAGGCGATCATCTCTTCATGACNGGTCAGGCGTACAGC]

[+] EMBL BX469832             [GGCAAGAATTCGGCACGNTGGGGAGTGGCTTGTTTGCGACACCGGCCGGTCGTAGAAAGCTGCAAGAATCGGCCAAGTTTGATCGACTTGCAATCGTAACGCTTCACCGGGGACACGTGTACACCGATCTGGAAGCGGTCAAGGCGGAACTAGCGGAGAGTGTAAAATCACTCGCACCACAACAAGTGTTGCAGAGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCCGGGAAACGATCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACGTGGTGGAGGAGATTGCCGGCGAGAATGGGCGCCTGTTCCGGCGGCTCGTCTTCCTCTCCAACCAAGCGGTGGTACAGTCGGAGGCGGCACTCAAAATGGCCCGCGTGCGTGGCAGCCGTGCGCCACAGAAGGTGATCGATGCGGGCTATCTGGCCTGNCAGGCGATCATCTCTTCATGACNGGTCAGGCGTACAGC]




>consensus_3033#0
GGCAAGAATTCGGCACGNTGGGGAGTGGCTTGTTTGCGACACCGGCCGGTCGTAGAAAGC
TGCAAGAATCGGCCAAGTTTGATCGACTTGCAATCGTAACGCTTCACCGGGGACACGTGT
ACACCGATCTGGAAGCGGTCAAGGCGGAACTAGCGGAGAGTGTAAAATCACTCGCACCAC
AACAAGTGTTGCAGAGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCC
GGGAAACGATCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACGTGGTGGAGGAGATTG
CCGGCGAGAATGGGCGCCTGTTCCGGCGGCTCGTCTTCCTCTCCAACCAAGCGGTGGTAC
AGTCGGAGGCGGCACTCAAAATGGCCCGCGTGCGTGGCAGCCGTGCGCCACAGAAGGTGA
TCGATGCGGGCTATCTGGCCTGNCAGGCGATCATCTCTTCATGACNGGTCAGGCGTACAG
C

consensusID : consensus_3033#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [AGAATCCCCCGAGGTTACAACCGACAAGGAGCGACCACGCTACACTGATCCACGTGCTCGACCAGTGCACCGAAGAGGGGTAACGGCAAATACGCCGCCTTCATTGTACCTGCANGGCCGTGAAACGGAGTGGCTGTTTTGCGACACCGGTCGGTCGTAGAAAGCTGCAAGAATCGGCCAAGTTTGATCGACTTGCAATCGTAACGCTTCACCGGTGGACACGTGTACACCGATCTGGCAAGCGGTCAAGGCGGAACTAGCGGAGAGCTGTACAAATCATTCGCACCACAACAAGTGTTGCAGTAGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCCGTGGAAACGATCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACGATGGTGGACGGAGATTNGCCGGCGAGCAACTGGGCGCCTGTTACCAGNGCGGCTCGTCCTTC]

[+] EMBL AL933493             [AGAATCCCCCGAGGTTACAACCGACAAGGAGCGACCACGCTACACTGATCCACGTGCTCGACCAGTGCACCGAAGAGGGGTAACGGCAAATACGCCGCCTTCATTGTACCTGCANGGCCGTGAAACGGAGTGGCTGTTTTGCGACACCGGTCGGTCGTAGAAAGCTGCAAGAATCGGCCAAGTTTGATCGACTTGCAATCGTAACGCTTCACCGGTGGACACGTGTACACCGATCTGGCAAGCGGTCAAGGCGGAACTAGCGGAGAGCTGTACAAATCATTCGCACCACAACAAGTGTTGCAGTAGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCCGTGGAAACGATCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACGATGGTGGACGGAGATTNGCCGGCGAGCAACTGGGCGCCTGTTACCAGNGCGGCTCGTCCTTC]




>consensus_3033#1
AGAATCCCCCGAGGTTACAACCGACAAGGAGCGACCACGCTACACTGATCCACGTGCTCG
ACCAGTGCACCGAAGAGGGGTAACGGCAAATACGCCGCCTTCATTGTACCTGCANGGCCG
TGAAACGGAGTGGCTGTTTTGCGACACCGGTCGGTCGTAGAAAGCTGCAAGAATCGGCCA
AGTTTGATCGACTTGCAATCGTAACGCTTCACCGGTGGACACGTGTACACCGATCTGGCA
AGCGGTCAAGGCGGAACTAGCGGAGAGCTGTACAAATCATTCGCACCACAACAAGTGTTG
CAGTAGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCCGTGGAAACGA
TCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACGATGGTGGACGGAGATTNGCCGGCG
AGCAACTGGGCGCCTGTTACCAGNGCGGCTCGTCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3033#0      ------------------------------------------------------------
consensus_3033#1      AGAATCCCCCGAGGTTACAACCGACAAGGAGCGACCACGCTACACTGATCCACGTGCTCG 60
                                                                                  

consensus_3033#0      --------------------------------------------GGCAAGAATTCGGC-A 15
consensus_3033#1      ACCAGTGCACCGAAGAGGGGTAACGGCAAATACGCCGCCTTCATTGTACCTGCANGGCCG 120
                                                                   * *       ***  

consensus_3033#0      CGNTGGGGAGTGGCTTGTTTGCGACACCGGCCGGTCGTAGAAAGCTGCAAGAATCGGCCA 75
consensus_3033#1      TGAAACGGAGTGGCTGTTTTGCGACACCGGTCGGTCGTAGAAAGCTGCAAGAATCGGCCA 180
                       *    *********  ************* *****************************

consensus_3033#0      AGTTTGATCGACTTGCAATCGTAACGCTTCACCGG-GGACACGTGTACACCGATCTGG-A 133
consensus_3033#1      AGTTTGATCGACTTGCAATCGTAACGCTTCACCGGTGGACACGTGTACACCGATCTGGCA 240
                      *********************************** ********************** *

consensus_3033#0      AGCGGTCAAGGCGGAACTAGCGGAGAG-TGTA-AAATCACTCGCACCACAACAAGTGTTG 191
consensus_3033#1      AGCGGTCAAGGCGGAACTAGCGGAGAGCTGTACAAATCATTCGCACCACAACAAGTGTTG 300
                      *************************** **** ****** ********************

consensus_3033#0      CAG-AGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCCG-GGAAACGA 249
consensus_3033#1      CAGTAGCGCATCGATACCGTACCTCTCGATCGGTGCGGAAGTAGGCCGCCGTGGAAACGA 360
                      *** *********************************************** ********

consensus_3033#0      TCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACG-TGGTGGA-GGAGATTG-CCGGCG 306
consensus_3033#1      TCCACACCGGCCGCAGCGAACTGTCCGGTGAGTACGATGGTGGACGGAGATTNGCCGGCG 420
                      ************************************ ******* *******  ******

consensus_3033#0      AGAA--TGGGCGCCTGTTCC---GGCGGCTCGTCTTCCTCTCCAACCAAGCGGTGGTACA 361
consensus_3033#1      AGCAACTGGGCGCCTGTTACCAGNGCGGCTCGTCCTTC---------------------- 458
                      ** *  ************ *    ********** * *                      

consensus_3033#0      GTCGGAGGCGGCACTCAAAATGGCCCGCGTGCGTGGCAGCCGTGCGCCACAGAAGGTGAT 421
consensus_3033#1      ------------------------------------------------------------
                                                                                  

consensus_3033#0      CGATGCGGGCTATCTGGCCTGNCAGGCGATCATCTCTTCATGACNGGTCAGGCGTACAGC 481
consensus_3033#1      ------------------------------------------------------------