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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence
[AGATCCCCCGAGGTTTACACGAGGCGTGTATGGNCTCTGCACAGGACCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACTGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCTGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAGAACGACATAATATTCGCACCGAAAATGGATGCGAAAGGTGGAAGTGATTGCAATTTTTTANGTGTGCGCGACGAGCGTACTCTCCCTGCCATATTCCAGTGAGATGCGCGATCACCCTCAATGTGACCATTGCAGCAGGAGAAAAACTCGATCANTCGANACCACCTTCTTTGACAACGATGGTCAAACAGTTTTTGAGAGGTTTATCACCAAAATCTGCTCGATGCAGTACTCTGCATGTTTATTGAAAGTATGGGGACACACGATCCCACCGATAACAGACAACCGCGGNTCTTTCGAACGTGGACAGGAGCTCTGGAACGAGTGAACTGGAGGTCGACACTCCTNTCGGCTGTGACGTATGACTAAGGTAAACTACTNTACCGCATACGAACTTGCNGTGACGANATGTGTTACACTATTTGCTGTCCGGCNGTANGCCNGTGATGCTTCACNCAAGTGNNNTCAANTAGGGGAAACGAATGTNG]
[+] EMBL AL931742 [AGATCCCCCGAGGTTTACACGAGGCGTGTATGGNCTCTGCACAGGACCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACTGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCTGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAGAACGACATAATATTCGCACCGAAAATGGATGCGAAAGGTGGAAGTGATTGCAATTTTTTANGTGTGCGCGACGAGCGTACTCTCCCTGCCATATTCCAGTGAGATGCGCGATCACCCTCAATGTGACCATTGCAGCAGGAGAAAAACTCGATCANTCGANACCACCTTCTTTGACAACGATGGTCAAACAGTTTTTGAGAGGTTTATCACCAAAATCTGCTCGATGCAGTACTCTGCATGTTTATTGAAAGTATGGGGACACACGATCCCACCGATAACAGACAACCGCGGNTCTTTCGAACGTGGACAGGAGCTCTGGAACGAGTGAACTGGAGGTCGACACTCCTNTCGGCTGTGACGTATGACTAAGGTAAACTACTNTACCGCATACGAACTTGCNGTGACGANATGTGTTACACTATTTGCTGTCCGGCNGTANGCCNGTGATGCTTCACNCAAGTGNNNTCAANTAGGGGAAACGAATGTNG]
consensusID : consensus_3034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[ATTGGAAATAATTGACATTTGTGTAATGGCTTTTTGAGTGCGCATGGTGTGCGCGGCCATGTAGTTATCTAGGTACAGTGAGATCGGATAAGCAATCGAAGTGCAAGGGAAGCGATATAAACTACCATTACCCCCAAATGGGAACGCAGCAGAAGAGGAGGTAGCGCGAAGAAAATCGAAACGAACAGAGAACTCGAAATTTAAAGCGAAACGACGATCGCCACTCAACGGGCCACATTGTACAAAGAACGGAACTGCAGCGGCAACCCAGTCGAGTGGGTGGATGCATCGCGTATCGTGTATGGCCTCTGCCACAGGACCCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAG]
[+] EMBL BX620130 [ATTGGAAATAATTGACATTTGTGTAATGGCTTTTTGAGTGCGCATGGTGTGCGCGGCCATGTAGTTATCTAGGTACAGTGAGATCGGATAAGCAATCGAAGTGCAAGGGAAGCGATATAAACTACCATTACCCCCAAATGGGAACGCAGCAGAAGAGGAGGTAGCGCGAAGAAAATCGAAACGAACAGAGAACTCGAAATTTAAAGCGAAACGACGATCGCCACTCAACGGGCCACATTGTACAAAGAACGGAACTGCAGCGGCAACCCAGTCGAGTGGGTGGATGCATCGCGTATCGTGTATGGCCTCTGCCACAGGACCCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3034#0 AGATCCCCCGAGGTTTACACGAGGCGTGTATGGNCTCTGCACAGGACCGAACGGTCCGCA 60
consensus_3034#1 ------------------------------------------------------------
consensus_3034#0 GACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGC 120
consensus_3034#1 ------------------------------------------------------------
consensus_3034#0 CAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAG 180
consensus_3034#1 -----------------------ATTGGAAATAATTGACATTTGT-GTAATGGCTTTTTG 36
* ** * * * ** * * ** * * * *
consensus_3034#0 ACTGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCTGAGATTTGACT 240
consensus_3034#1 AGTGCGCATGGTGTGCGCGGCCATGTA-GTTATCTAGGTACAGTGAGATCGGAT------ 89
* ** ** *** * ** * ** ** ** *** * * ***
consensus_3034#0 CATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAA 300
consensus_3034#1 -AAGCAATCGAAGTGCAAGGGAAGCG-ATATAAACTACCATTACCCCCAAATGGGAACGC 147
* * ** *** * **** * * * **** * * ** * * **
consensus_3034#0 CCTTTAGAACGACATAATATTCGCACCGAAAATGGATGCGAAAGGTGGAAGTGATTGCAA 360
consensus_3034#1 AGCAGAAGAGGAGGTAG----CGCGAAGAAAATCGAAACGAACAGAGAA------CTCGA 197
* * ** ** *** ****** ** **** * * * * *
consensus_3034#0 TTTTTTANGTGTGCGCGACGAGCGT-ACTCTCCCTGCCATATTCCAGTGAGATGCGCGAT 419
consensus_3034#1 AATTTAAAGCG-AAACGACGATCGCCACTCAACGGGCCACATTGTACAAAGA-ACGGAAC 255
*** * * * ****** ** **** * **** *** * *** ** *
consensus_3034#0 CACCCTCAATGTGACCATTGCAGCAGGAGAAAAACTCGATCANTCGANACCACCTTCTTT 479
consensus_3034#1 TGCAGCGGCAAC--CCAGTCGAGTGGGTGGATGCATCGCGTATCGTGTATGGCCTCT--- 310
* *** * ** ** * * *** * * ***
consensus_3034#0 GACAACGATGGTCAAACAGTTTTTGAGAGGTTTATCACCAAAATCTGCTCGATGCAGTAC 539
consensus_3034#1 -GCCACAGGACCCGAACGGTC--------------CGCAGACGACGGTCCGCAGTGGCAA 355
* ** * *** ** * * * * * ** * * *
consensus_3034#0 TCTGCATGTTTATTGAAAGTATGGGGACACACGATCCCACCGATAACAGACAACCGCGGN 599
consensus_3034#1 TC-GTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAG 414
** * * * * * **** * * * * ** ** * * * ***
consensus_3034#0 TCTTTCGAACGTGGACAGGAGCTCTGGAACGAGTGAACTGGAGGTCGACACTCCTNTCGG 659
consensus_3034#1 AGAAAGAGACACCAACGGCAGCAATAG---CAACGAACTCTAGA-CGACGGACATGCAGT 470
** ** * *** * * * ***** ** **** * * *
consensus_3034#0 CTGTGACGTATGACTAAGGTAAACTACTNTACCGCATACGAACTTGCNGTGACGANATGT 719
consensus_3034#1 CGGTGAAGTTTGA--------AATTGTGGCACTGTGGGCGAGATTTGACTCATGGAA-GC 521
* **** ** *** ** * ** * *** ** * * * * *
consensus_3034#0 GTTACACTATTTGCTGTCCGGCNGTANGCCNGTGAT-GCTTCACNCAAGTGNNNTCAANT 778
consensus_3034#1 G------AGTTTTCCTTCCAGCG-TAGCCCAGCGACCACGCCACACATAAAAGGACAACC 574
* *** * *** ** ** ** * ** * *** ** ***
consensus_3034#0 AGGGGAAACGAATGTNG 795
consensus_3034#1 TTTAG------------ 579
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||