cluster # 3036

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Anopheles gambiae
cluster # 3036 cluster # 3036 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3036#0 length = 434 sequences # 1

consensus_3036#1 length = 418 sequences # 1

consensusID : consensus_3036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TGCCACGCCAGCTGTGCACAAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGTTGCAGCGGTACTAGGATGATCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGACAATCCGTGCTCGACCCGGTGGCGGATCCGATGTCGCTTGAGGTTTTCCCTAACACCAGACCCGCCTTTAACTTTGCGGCCTACGTCAACAAATCGCCCACCCTGCAGCAACTCGTCTCGCTCGGCGTGGAGCTGCACAAGCTCGAGAAGCGTAAGGGCATCGCACAGTTTGTACTCGGGCTGGACTTCGATCGAGACATGCGGAATCACATCCGCTTCCTGGCGGACGTTGGAGTGCCGGCCGAAAGCTTGGTCGAGTTTCTGACCAAAAATCCACTCATCTTCAAGGAGGATCTGGGGGATCTCGAGACGCGA]

[+] EMBL BX609519             [TGCCACGCCAGCTGTGCACAAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGTTGCAGCGGTACTAGGATGATCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGACAATCCGTGCTCGACCCGGTGGCGGATCCGATGTCGCTTGAGGTTTTCCCTAACACCAGACCCGCCTTTAACTTTGCGGCCTACGTCAACAAATCGCCCACCCTGCAGCAACTCGTCTCGCTCGGCGTGGAGCTGCACAAGCTCGAGAAGCGTAAGGGCATCGCACAGTTTGTACTCGGGCTGGACTTCGATCGAGACATGCGGAATCACATCCGCTTCCTGGCGGACGTTGGAGTGCCGGCCGAAAGCTTGGTCGAGTTTCTGACCAAAAATCCACTCATCTTCAAGGAGGATCTGGGGGATCTCGAGACGCGA]




>consensus_3036#0
TGCCACGCCAGCTGTGCACAAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGT
TGCAGCGGTACTAGGATGATCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGAC
AATCCGTGCTCGACCCGGTGGCGGATCCGATGTCGCTTGAGGTTTTCCCTAACACCAGAC
CCGCCTTTAACTTTGCGGCCTACGTCAACAAATCGCCCACCCTGCAGCAACTCGTCTCGC
TCGGCGTGGAGCTGCACAAGCTCGAGAAGCGTAAGGGCATCGCACAGTTTGTACTCGGGC
TGGACTTCGATCGAGACATGCGGAATCACATCCGCTTCCTGGCGGACGTTGGAGTGCCGG
CCGAAAGCTTGGTCGAGTTTCTGACCAAAAATCCACTCATCTTCAAGGAGGATCTGGGGG
ATCTCGAGACGCGA

consensusID : consensus_3036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [GAATCGCCCCGAGGGGAATTCTGCACGTGCAGGACCTTCCCTGCCACGCCAGCTGTGCACAAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGTTGCAGCGGTACGAGGATGATCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGACAATCCGTGCTCGACCCGGTGGCGGATCCGATGTCGCTGGAGGTTTTCCCTAACACCAGACCCGGCCTTTAACTTTGCGGCCTACGTCAACAAATCTGCCCACCCTGCAGCAACTCCGTTCCTTCCGGCCCTTCCCGGCGTGGAGCTTGGGCCGAATGCCCTAAANTAAAGTGGGGGGCCCGTTTTCCCCGGGGGTAACTGGGGTAAATCACTGGCGGCCCTGGGGTTTTAACACTGGTGTGGGCCTATTCTGGTCGC]

[+] EMBL AL932561             [GAATCGCCCCGAGGGGAATTCTGCACGTGCAGGACCTTCCCTGCCACGCCAGCTGTGCACAAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGTTGCAGCGGTACGAGGATGATCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGACAATCCGTGCTCGACCCGGTGGCGGATCCGATGTCGCTGGAGGTTTTCCCTAACACCAGACCCGGCCTTTAACTTTGCGGCCTACGTCAACAAATCTGCCCACCCTGCAGCAACTCCGTTCCTTCCGGCCCTTCCCGGCGTGGAGCTTGGGCCGAATGCCCTAAANTAAAGTGGGGGGCCCGTTTTCCCCGGGGGTAACTGGGGTAAATCACTGGCGGCCCTGGGGTTTTAACACTGGTGTGGGCCTATTCTGGTCGC]




>consensus_3036#1
GAATCGCCCCGAGGGGAATTCTGCACGTGCAGGACCTTCCCTGCCACGCCAGCTGTGCAC
AAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGTTGCAGCGGTACGAGGATGA
TCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGACAATCCGTGCTCGACCCGGT
GGCGGATCCGATGTCGCTGGAGGTTTTCCCTAACACCAGACCCGGCCTTTAACTTTGCGG
CCTACGTCAACAAATCTGCCCACCCTGCAGCAACTCCGTTCCTTCCGGCCCTTCCCGGCG
TGGAGCTTGGGCCGAATGCCCTAAANTAAAGTGGGGGGCCCGTTTTCCCCGGGGGTAACT
GGGGTAAATCACTGGCGGCCCTGGGGTTTTAACACTGGTGTGGGCCTATTCTGGTCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3036#0      -----------------------------------------TGCCACGCCAGCTGTGCAC 19
consensus_3036#1      GAATCGCCCCGAGGGGAATTCTGCACGTGCAGGACCTTCCCTGCCACGCCAGCTGTGCAC 60
                                                               *******************

consensus_3036#0      AAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGTTGCAGCGGTACTAGGATGA 79
consensus_3036#1      AAAGGTGGCCACAGTGCCCATAACTCCTCAGCACAATGCGTTGCAGCGGTACGAGGATGA 120
                      **************************************************** *******

consensus_3036#0      TCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGACAATCCGTGCTCGACCCGGT 139
consensus_3036#1      TCTGCAGAACGAGTTTCATCAAATCCTGCGCGAAGAGCGACAATCCGTGCTCGACCCGGT 180
                      ************************************************************

consensus_3036#0      GGCGGATCCGATGTCGCTTGAGGTTTTCCCTAACACCAGACCCG-CCTTTAACTTTGCGG 198
consensus_3036#1      GGCGGATCCGATGTCGCTGGAGGTTTTCCCTAACACCAGACCCGGCCTTTAACTTTGCGG 240
                      ****************** ************************* ***************

consensus_3036#0      CCTACGTCAACAAATC-GCCCACCCTGCAGCAACTCGTCTCGCTCGGCGTGGAGCTGCAC 257
consensus_3036#1      CCTACGTCAACAAATCTGCCCACCCTGCAGCAACTC----CGTTCCTTCCGGCCCTTCCC 296
                      **************** *******************    ** **     **  ** * *

consensus_3036#0      AAGCTCGAGAAGCGTAAGGGCATCGCACAGTTTGTACTCGGGCTGGACTTCGATCGAGAC 317
consensus_3036#1      GGCGTGGAGCTTGGGCCGAATGCCCTAAANTAAAGTGGGGGGCCCGTTTTCCCCGGGGGT 356
                          * ***    *   *     *  * * *        ****  *  ***    * *  

consensus_3036#0      ATGCGGAATCACATCCGCTTCCTGGCGGACGTTGGAGTGCCGGCCGAAAGCTTGGTCGAG 377
consensus_3036#1      AACTGGGGTAA-ATCACTGGCGGCCCTGGGGTTTTAACACTGGT-GTGGGCCTATTCTGG 414
                      *   **  * * ***     *    * *  ***  *   * **  *   ** *  **  *

consensus_3036#0      TTTCTGACCAAAAATCCACTCATCTTCAAGGAGGATCTGGGGGATCTCGAGACGCGA 434
consensus_3036#1      TCGC----------------------------------------------------- 418
                      *  *