cluster # 3048

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Anopheles gambiae
cluster # 3048 cluster # 3048 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3048#0 length = 787 sequences # 1

consensus_3048#1 length = 664 sequences # 1

consensusID : consensus_3048#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence

                              [CCGCCCACGCGTCCGAGGAAGCGCTGACTCTACGCAAAGATCGGGCCAGGAAAAGGGACGCAATAAGAGCGACAAGACGAGCGGCGTTAAGCGCGATAAGGGTGGTTCGCGTTCCGGTGCGGAAGGGCTCGAGACAGGCGGGAAGAAAGGGCGCTCAGGCACGCATTCGAACGAGGATGAAGCTAGTGGGCTGCAGAACTGTCGAAGCGATGCGTCCTCCGCGCCGTTGGCAAACGACGAAACGGAGGAAGAGCGTGGCGAGGATTACGAGGAGTACGATTCGGACGAGTACGATCAGGTAAGTATCGGCTCGTCGGAAACGTCCGGCCGGCAGGACAAGCAGCAGCAGCAGCAGCAGCATCAGGCCGGCCATGAGGAGCTCCCTTTCCTGTACAACGTGAAAAAGAACACTGACGGAGCGATTGATACACATATCGAAAAGATTAACCCTCCGAGAACGGCTACTGCTACGACACATCGGAAGGGAGGTGGTGGCCGCACTGCACGCGCACCCGGCAAGCAACCGGACAAGTCGGTCGGTAACCACCAGGCCAGCGGGAAAGCGTTCCGTGCGGTCGCGCAAAAATCAAAAGTACGCCTTTCTGGAGAAGCTGCTGCTGAAGTGGCTTCGAGTACCCGATGCTGGCACTGCCCTGGCCTGGGGTCCTCGTCAACGACGGGGTGTATCTGAGCCGCCCGTTCTAGCGCGGGGACTATGTGCTGTTCCGGGTAACCAGTACTGGCCGGAAGCACGGGGATAATTTTCGGGCAAATTTTTGGCCAAAAT]

[+] EMBL BM617782             [CCGCCCACGCGTCCGAGGAAGCGCTGACTCTACGCAAAGATCGGGCCAGGAAAAGGGACGCAATAAGAGCGACAAGACGAGCGGCGTTAAGCGCGATAAGGGTGGTTCGCGTTCCGGTGCGGAAGGGCTCGAGACAGGCGGGAAGAAAGGGCGCTCAGGCACGCATTCGAACGAGGATGAAGCTAGTGGGCTGCAGAACTGTCGAAGCGATGCGTCCTCCGCGCCGTTGGCAAACGACGAAACGGAGGAAGAGCGTGGCGAGGATTACGAGGAGTACGATTCGGACGAGTACGATCAGGTAAGTATCGGCTCGTCGGAAACGTCCGGCCGGCAGGACAAGCAGCAGCAGCAGCAGCAGCATCAGGCCGGCCATGAGGAGCTCCCTTTCCTGTACAACGTGAAAAAGAACACTGACGGAGCGATTGATACACATATCGAAAAGATTAACCCTCCGAGAACGGCTACTGCTACGACACATCGGAAGGGAGGTGGTGGCCGCACTGCACGCGCACCCGGCAAGCAACCGGACAAGTCGGTCGGTAACCACCAGGCCAGCGGGAAAGCGTTCCGTGCGGTCGCGCAAAAATCAAAAGTACGCCTTTCTGGAGAAGCTGCTGCTGAAGTGGCTTCGAGTACCCGATGCTGGCACTGCCCTGGCCTGGGGTCCTCGTCAACGACGGGGTGTATCTGAGCCGCCCGTTCTAGCGCGGGGACTATGTGCTGTTCCGGGTAACCAGTACTGGCCGGAAGCACGGGGATAATTTTCGGGCAAATTTTTGGCCAAAAT]




>consensus_3048#0
CCGCCCACGCGTCCGAGGAAGCGCTGACTCTACGCAAAGATCGGGCCAGGAAAAGGGACG
CAATAAGAGCGACAAGACGAGCGGCGTTAAGCGCGATAAGGGTGGTTCGCGTTCCGGTGC
GGAAGGGCTCGAGACAGGCGGGAAGAAAGGGCGCTCAGGCACGCATTCGAACGAGGATGA
AGCTAGTGGGCTGCAGAACTGTCGAAGCGATGCGTCCTCCGCGCCGTTGGCAAACGACGA
AACGGAGGAAGAGCGTGGCGAGGATTACGAGGAGTACGATTCGGACGAGTACGATCAGGT
AAGTATCGGCTCGTCGGAAACGTCCGGCCGGCAGGACAAGCAGCAGCAGCAGCAGCAGCA
TCAGGCCGGCCATGAGGAGCTCCCTTTCCTGTACAACGTGAAAAAGAACACTGACGGAGC
GATTGATACACATATCGAAAAGATTAACCCTCCGAGAACGGCTACTGCTACGACACATCG
GAAGGGAGGTGGTGGCCGCACTGCACGCGCACCCGGCAAGCAACCGGACAAGTCGGTCGG
TAACCACCAGGCCAGCGGGAAAGCGTTCCGTGCGGTCGCGCAAAAATCAAAAGTACGCCT
TTCTGGAGAAGCTGCTGCTGAAGTGGCTTCGAGTACCCGATGCTGGCACTGCCCTGGCCT
GGGGTCCTCGTCAACGACGGGGTGTATCTGAGCCGCCCGTTCTAGCGCGGGGACTATGTG
CTGTTCCGGGTAACCAGTACTGGCCGGAAGCACGGGGATAATTTTCGGGCAAATTTTTGG
CCAAAAT

consensusID : consensus_3048#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCGCAATCCAGTCACACCGAACGTGATCGGTACGGCATCGCAAGCGCACGGATCGCCCTCCGGCTCGCCGAGTGTAGTGACGGCGGTGTCGTCGAATCGCAACAATACGAACGCTGCGGCCGTATACAACCAGCAGAACGACGACAACTCGGCCAAGCTGGACCAGAACGTGAACAAGAAGCAGCGCATAGTGGCGGAGGTAAAGCCGATGCGCATGTCGTACTCCGATGTGCTGAGCAAAAACGTGTCGTCCGGAGGTAATCCGTTCGCTTCAAACGCGTCCACTAACGGGGAAATGGTAAGCGCCCTTCCGGCAACGTTCGGCAACGGCACAAAGGTGTCCGGTGGCAACGGACCGAACGGTGGTTCAGGTGGAAAGTCGAAACGCGAATCGAAACGTTCCAATGCCAACGGAGAACGCAAATCGATGGGAAACGCTGGGAATGTAACGCACGCCAAGGATAGGGCCAATGATGGAAGCACGCGCAAGGCTGACCGTACGAACGGTGCTGGAACTGGGACGAACTCTCCCACGATGACGGATGGAGGCAGCAGCAAGCCGATGGAAGGAAGCGCTGACGCTACGCAAAGATCGGGCCAGGAAAAGGGACGCAATAAGAGCGACAAGACGAGCGGCGTTAAGCGCGATAAGGGTGGTTCGCGT]

[+] EMBL BM578436             [CCGCAATCCAGTCACACCGAACGTGATCGGTACGGCATCGCAAGCGCACGGATCGCCCTCCGGCTCGCCGAGTGTAGTGACGGCGGTGTCGTCGAATCGCAACAATACGAACGCTGCGGCCGTATACAACCAGCAGAACGACGACAACTCGGCCAAGCTGGACCAGAACGTGAACAAGAAGCAGCGCATAGTGGCGGAGGTAAAGCCGATGCGCATGTCGTACTCCGATGTGCTGAGCAAAAACGTGTCGTCCGGAGGTAATCCGTTCGCTTCAAACGCGTCCACTAACGGGGAAATGGTAAGCGCCCTTCCGGCAACGTTCGGCAACGGCACAAAGGTGTCCGGTGGCAACGGACCGAACGGTGGTTCAGGTGGAAAGTCGAAACGCGAATCGAAACGTTCCAATGCCAACGGAGAACGCAAATCGATGGGAAACGCTGGGAATGTAACGCACGCCAAGGATAGGGCCAATGATGGAAGCACGCGCAAGGCTGACCGTACGAACGGTGCTGGAACTGGGACGAACTCTCCCACGATGACGGATGGAGGCAGCAGCAAGCCGATGGAAGGAAGCGCTGACGCTACGCAAAGATCGGGCCAGGAAAAGGGACGCAATAAGAGCGACAAGACGAGCGGCGTTAAGCGCGATAAGGGTGGTTCGCGT]




>consensus_3048#1
CCGCAATCCAGTCACACCGAACGTGATCGGTACGGCATCGCAAGCGCACGGATCGCCCTC
CGGCTCGCCGAGTGTAGTGACGGCGGTGTCGTCGAATCGCAACAATACGAACGCTGCGGC
CGTATACAACCAGCAGAACGACGACAACTCGGCCAAGCTGGACCAGAACGTGAACAAGAA
GCAGCGCATAGTGGCGGAGGTAAAGCCGATGCGCATGTCGTACTCCGATGTGCTGAGCAA
AAACGTGTCGTCCGGAGGTAATCCGTTCGCTTCAAACGCGTCCACTAACGGGGAAATGGT
AAGCGCCCTTCCGGCAACGTTCGGCAACGGCACAAAGGTGTCCGGTGGCAACGGACCGAA
CGGTGGTTCAGGTGGAAAGTCGAAACGCGAATCGAAACGTTCCAATGCCAACGGAGAACG
CAAATCGATGGGAAACGCTGGGAATGTAACGCACGCCAAGGATAGGGCCAATGATGGAAG
CACGCGCAAGGCTGACCGTACGAACGGTGCTGGAACTGGGACGAACTCTCCCACGATGAC
GGATGGAGGCAGCAGCAAGCCGATGGAAGGAAGCGCTGACGCTACGCAAAGATCGGGCCA
GGAAAAGGGACGCAATAAGAGCGACAAGACGAGCGGCGTTAAGCGCGATAAGGGTGGTTC
GCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3048#0      CCGCCCACGCGTCCGAGGAAGCGCTGACTCTACGCAAAGATCGGGCCAGGAAAAGGGACG 60
consensus_3048#1      CCGCAATCCAGTCACACCGAACGTGATCGGTACG---GCATCG--CAAGCGCACGGATCG 55
                      ****   *  ***  *   * **    *  ****     ****  * **   * **  **

consensus_3048#0      CAATAAGAGCGACAAGACGAGCGGCGTTAAGCGCGATAAGGGTGGTTCGCGTTCCGGTGC 120
consensus_3048#1      CCCTC----CGGCTCGCCGAGTGTAGTGACG-GCGGTGTCGTCGAATCGCA--ACAATAC 108
                      *  *     ** *  * **** *  ** * * *** *   *  *  ****    *  * *

consensus_3048#0      GGAAG----GGCTCGAGACAGGCGG--GAAGAAAGGGCGCTCAGGCACGCATTCGAACGA 174
consensus_3048#1      GAACGCTGCGGCCGTATACAACCAGCAGAACGACGACAACTCGGCCAAGC---TGGACCA 165
                      * * *    ***   * ***  * *  ***  * *    *** * ** **    * ** *

consensus_3048#0      GGATGAAGCTAGTGGGCTGCAGAACTGTCGAAGCGATGCGTCCTCCGCGCCGTTGGCAAA 234
consensus_3048#1      GAACGTGAACAAGAAGCAGC-GCATAGTGGCGGAGGTAAAGCCGATGCGCATGTCGTACT 224
                      * * *     *    ** ** * *  ** *  * * *    **   ****   * * *  

consensus_3048#0      CGACGAAACGGAGGAAGAGCGTGGCGAG-GATTACGAGGAGTACGATTCGGACGAGTACG 293
consensus_3048#1      CCGATGTGCTGAGCAAAAACGTGTCGTCCGGAGGTAATCCGTTCGCTTCAAACGCGTCCA 284
                      *       * *** ** * **** **   *      *   ** ** ***  *** ** * 

consensus_3048#0      ATCAGGTAAGTATCGGCTCGTCGGAAACGTCCGGCCGGCAGGACAAGCAGCAGCAGCAGC 353
consensus_3048#1      CTAACGGGGAAATGGT--------AAGCGCCCTTCCGGCA--ACGTTCGGCAACGGCA-C 333
                       * * *     ** *         ** ** **  ******  **   * *** * *** *

consensus_3048#0      AGCAGCATCAGGCCGGCCATGAG--GAGCTCCCTTTCCTGTACAACGTGAAAAAGAACAC 411
consensus_3048#1      AAAGGTGTCCGGT-GGCAACGGACCGAACGGTGGTTCAGGTGGAAAGTCGAAACGCGAAT 392
                      *   *  ** **  *** * *    ** *     ***  **  ** **  *** *   * 

consensus_3048#0      TGACGGAGCGATTGATACACATATCGAAAAGATTAACCCTCCGAGAACGGCTACTGCTAC 471
consensus_3048#1      CGA---AACGTTCCA-ATGC-CAACGGAGAACGCAAATCGATGGGAAACGCTGGGAATGT 447
                       **   * ** *  * *  *  * ** * *    **  *   * ***  ***     *  

consensus_3048#0      GACACATCGGAAGGGAGGTGGTGGCCGCACTGCACGCGCACCCGGCAAGCAACCGGACAA 531
consensus_3048#1      AACGCACGCCAAG---GATAGGGCCAATGATGGAAGCACGC---GCAAGG---CTGACCG 498
                       ** **    ***   * * * * *     ** * ** * *   *****    * ***  

consensus_3048#0      GTCGGTCGGTAACCACCAGGCCAGCGGGAAAGCGTTCCGTGCGGTCGCGCAAAAATCAAA 591
consensus_3048#1      TACGAACGGTG----CTGGAACTGGGACGAACTCTCCCACGATGACGGATGGAGG-CAGC 553
                        **  ****     *  *  * * *   **   * **  *  * **     *   **  

consensus_3048#0      AGTACGCCTTTCTGGAGAAGCTGCTGCTGAAGTGGCTTCGAGTACCCGATGCTGGCACTG 651
consensus_3048#1      AGCAAGCCGATGGAAGGAAGC----GCTGACGCTACGCAAAGATCGGGCCAGGAAAAGGG 609
                      ** * ***  *     *****    ***** *   *    **  *  *        *  *

consensus_3048#0      CCCTGGCCTGGGGTCCTCGTCAACGACGGGGTGTATCTGAGCCGCCCGTTCTAGCGCGGG 711
consensus_3048#1      ACGCAATAAGAG-----CGACAA-GACGAGCGGCGTTAAGCGCGATAAGGGTGGTTCGCG 663
                       *       * *     ** *** **** *  *  *      **       * *  ** *

consensus_3048#0      GACTATGTGCTGTTCCGGGTAACCAGTACTGGCCGGAAGCACGGGGATAATTTTCGGGCA 771
consensus_3048#1      T----------------------------------------------------------- 664
                                                                                  

consensus_3048#0      AATTTTTGGCCAAAAT 787
consensus_3048#1      ----------------