cluster # 3050

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Anopheles gambiae
cluster # 3050 cluster # 3050 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3050#0 length = 601 sequences # 1

consensus_3050#1 length = 594 sequences # 1

consensusID : consensus_3050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [AAGCGGCGCAAGCCGCAATTATACGGATTCTTATGATCACCATGTTATGAGTTGACGAATGGAAAACTACACTTTAAGGGATTTTTTTTTTTATATTACGATGGAATTAGCTGCCATTACTGCAGGCAATGCACTTTGATTTGAGCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCGGACTCCTTCGGGGTCGTCGGGAGTGATCTGGAATCGTCTGCAGCCCTCCAAAGTTGGTCGCGGCATTCTTCCATTCGTCCTTGGACTTGGTTTTGATTCTGAGTAGGATTCAGTGGATATCGGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACGCCGTAGCAATTCTGTGTGGTATCAGTACGTCATTTGTAACATAAGGGTGGACACTTCCCAACCCCATGCACCGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATGCTATTGGAATATTCATTGGGCGTAGTGTCTAGTGCAGTGGTCGGCAAACTTTACGGCATAGAGCCAAAATCAGCAACTCATACCGGTCAGAACTGCATGTGTAAGAATCAAATTGATGAACTCACCACTATAATGTATAAT]

[+] EMBL BX615646             [AAGCGGCGCAAGCCGCAATTATACGGATTCTTATGATCACCATGTTATGAGTTGACGAATGGAAAACTACACTTTAAGGGATTTTTTTTTTTATATTACGATGGAATTAGCTGCCATTACTGCAGGCAATGCACTTTGATTTGAGCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCGGACTCCTTCGGGGTCGTCGGGAGTGATCTGGAATCGTCTGCAGCCCTCCAAAGTTGGTCGCGGCATTCTTCCATTCGTCCTTGGACTTGGTTTTGATTCTGAGTAGGATTCAGTGGATATCGGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACGCCGTAGCAATTCTGTGTGGTATCAGTACGTCATTTGTAACATAAGGGTGGACACTTCCCAACCCCATGCACCGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATGCTATTGGAATATTCATTGGGCGTAGTGTCTAGTGCAGTGGTCGGCAAACTTTACGGCATAGAGCCAAAATCAGCAACTCATACCGGTCAGAACTGCATGTGTAAGAATCAAATTGATGAACTCACCACTATAATGTATAAT]




>consensus_3050#0
AAGCGGCGCAAGCCGCAATTATACGGATTCTTATGATCACCATGTTATGAGTTGACGAAT
GGAAAACTACACTTTAAGGGATTTTTTTTTTTATATTACGATGGAATTAGCTGCCATTAC
TGCAGGCAATGCACTTTGATTTGAGCTTGTTTGGATTGATCCATCCTGTTTGAACACATC
CGGACTCCTTCGGGGTCGTCGGGAGTGATCTGGAATCGTCTGCAGCCCTCCAAAGTTGGT
CGCGGCATTCTTCCATTCGTCCTTGGACTTGGTTTTGATTCTGAGTAGGATTCAGTGGAT
ATCGGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACGCCGTAGCAATTCTG
TGTGGTATCAGTACGTCATTTGTAACATAAGGGTGGACACTTCCCAACCCCATGCACCGG
GTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATGCTATTGGAATATTCATTGGG
CGTAGTGTCTAGTGCAGTGGTCGGCAAACTTTACGGCATAGAGCCAAAATCAGCAACTCA
TACCGGTCAGAACTGCATGTGTAAGAATCAAATTGATGAACTCACCACTATAATGTATAA
T

consensusID : consensus_3050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [TAAGCGGCGCAAGCCGCAATTATACGGATGCTTATGATCACCATGTTATGGGTTGACGAATGGAAAACTACACATTTTTATATTACGATGGAATTAGCTGCCATTACTGCAAGCAATGATATGCACTTTGATTTGACCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCAGGCTCATCCAGAGCCGTTCGTAATCAACCGGAATCGCCCGAAGCTAACCGGAATGGTTCGGAGTCATCCGGACTCATTCGGGGTCGTCGGAAGTGATCTGGAATCGTCTGGAGCCCTCCAAAGTTGGTCGCCGCATCCTTCCGGATTCGTCCTTGGACTTGGTTTTGATTCCCATTAGAATTCAGTGGATATCTGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACACCGTAACCATTCTGTGTGGTATCTGTACGTCATTTCTAACAGAAGGGTGGACACTTCCCAACCCAATGGAGTGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATCCTATTGGAATATTCATTGGGCGTAGCGTCTAGTGCAGTGGTCGGTAAACTTTACGGCATAAAGAGCCAAA]

[+] EMBL BX611130             [TAAGCGGCGCAAGCCGCAATTATACGGATGCTTATGATCACCATGTTATGGGTTGACGAATGGAAAACTACACATTTTTATATTACGATGGAATTAGCTGCCATTACTGCAAGCAATGATATGCACTTTGATTTGACCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCAGGCTCATCCAGAGCCGTTCGTAATCAACCGGAATCGCCCGAAGCTAACCGGAATGGTTCGGAGTCATCCGGACTCATTCGGGGTCGTCGGAAGTGATCTGGAATCGTCTGGAGCCCTCCAAAGTTGGTCGCCGCATCCTTCCGGATTCGTCCTTGGACTTGGTTTTGATTCCCATTAGAATTCAGTGGATATCTGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACACCGTAACCATTCTGTGTGGTATCTGTACGTCATTTCTAACAGAAGGGTGGACACTTCCCAACCCAATGGAGTGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATCCTATTGGAATATTCATTGGGCGTAGCGTCTAGTGCAGTGGTCGGTAAACTTTACGGCATAAAGAGCCAAA]




>consensus_3050#1
TAAGCGGCGCAAGCCGCAATTATACGGATGCTTATGATCACCATGTTATGGGTTGACGAA
TGGAAAACTACACATTTTTATATTACGATGGAATTAGCTGCCATTACTGCAAGCAATGAT
ATGCACTTTGATTTGACCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCAGGCTCA
TCCAGAGCCGTTCGTAATCAACCGGAATCGCCCGAAGCTAACCGGAATGGTTCGGAGTCA
TCCGGACTCATTCGGGGTCGTCGGAAGTGATCTGGAATCGTCTGGAGCCCTCCAAAGTTG
GTCGCCGCATCCTTCCGGATTCGTCCTTGGACTTGGTTTTGATTCCCATTAGAATTCAGT
GGATATCTGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACACCGTAACCAT
TCTGTGTGGTATCTGTACGTCATTTCTAACAGAAGGGTGGACACTTCCCAACCCAATGGA
GTGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATCCTATTGGAATATTCAT
TGGGCGTAGCGTCTAGTGCAGTGGTCGGTAAACTTTACGGCATAAAGAGCCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3050#0      -AAGCGGCGCAAGCCGCAATTATACGGATTCTTATGATCACCATGTTATGAGTTGACGAA 59
consensus_3050#1      TAAGCGGCGCAAGCCGCAATTATACGGATGCTTATGATCACCATGTTATGGGTTGACGAA 60
                       **************************** ******************** *********

consensus_3050#0      TGGAAAACTACACTTTAAGGGATTTTTTTTTTTATATTACGATGGAATTAGCTGCCATTA 119
consensus_3050#1      TGGAAAACTACACATT--------------TTTATATTACGATGGAATTAGCTGCCATTA 106
                      ************* **              ******************************

consensus_3050#0      CTGCAGGCAATG-----CACTTTGATTTGAGCTTGTTTGGATTGATCCATCCTGTTTGAA 174
consensus_3050#1      CTGCAAGCAATGATATGCACTTTGATTTGACCTTGTTTGGATTGATCCATCCTGTTTGAA 166
                      ***** ******     ************* *****************************

consensus_3050#0      CACATCC----------------------------------------------------- 181
consensus_3050#1      CACATCCAGGCTCATCCAGAGCCGTTCGTAATCAACCGGAATCGCCCGAAGCTAACCGGA 226
                      *******                                                     

consensus_3050#0      -----------------GGACTCCTTCGGGGTCGTCGGGAGTGATCTGGAATCGTCTGCA 224
consensus_3050#1      ATGGTTCGGAGTCATCCGGACTCATTCGGGGTCGTCGGAAGTGATCTGGAATCGTCTGGA 286
                                       ****** ************** ******************* *

consensus_3050#0      GCCCTCCAAAGTTGGTCGCGGCATTCTTCC--ATTCGTCCTTGGACTTGGTTTTGATTCT 282
consensus_3050#1      GCCCTCCAAAGTTGGTCGCCGCATCCTTCCGGATTCGTCCTTGGACTTGGTTTTGATTCC 346
                      ******************* **** *****  *************************** 

consensus_3050#0      GAGTAGGATTCAGTGGATATCGGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTA 342
consensus_3050#1      CATTAGAATTCAGTGGATATCTGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTA 406
                       * *** ************** **************************************

consensus_3050#0      CACGCCGTAGCAATTCTGTGTGGTATCAGTACGTCATTTGTAACATAAGGGTGGACACTT 402
consensus_3050#1      CACACCGTAACCATTCTGTGTGGTATCTGTACGTCATTTCTAACAGAAGGGTGGACACTT 466
                      *** ***** * *************** *********** ***** **************

consensus_3050#0      CCCAACCCCATGCACCGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATGCT 462
consensus_3050#1      CCCAACCCAATGGAGTGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATCCT 526
                      ******** *** *  ***************************************** **

consensus_3050#0      ATTGGAATATTCATTGGGCGTAGTGTCTAGTGCAGTGGTCGGCAAACTTTACGGCATA-- 520
consensus_3050#1      ATTGGAATATTCATTGGGCGTAGCGTCTAGTGCAGTGGTCGGTAAACTTTACGGCATAAA 586
                      *********************** ****************** ***************  

consensus_3050#0      GAGCCAAAATCAGCAACTCATACCGGTCAGAACTGCATGTGTAAGAATCAAATTGATGAA 580
consensus_3050#1      GAGCCAAA---------------------------------------------------- 594
                      ********                                                    

consensus_3050#0      CTCACCACTATAATGTATAAT 601
consensus_3050#1      ---------------------