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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGCCCACGCGTCCGGCTTGCTGCGGCGCGGAACAAACAAACCCGATCGACGATAGAGAGAGAGAGAAAGAGAGTGAGGGTTTTGCGGCAACGGCGGTGGGTGTCATCGCTTCTTCTTCTACTTCTTCGCTTCCACCCTCTATCAACCATCCAACTCCAATATACCCCGTCGTCGTCATCGTGCGTCGTCGTCCCCTCGCCCAACGTGCGGGAAGATCTTGCCGTAACACTGCGTGCACGTGCGTGTGTGTGTGTGCGCGCGCGTGCCCGACCCGTGTGCGTGTGCATACAGCAGCAGGGCAGGCAGGCAGGCAGTGATTTATCAAATGTAAAACAATAATTAAACACATTGGACGCACACACACACCACCACCATCTACACACACACAAGCACCCATCCGCCCGAGACAACAACCACCCACAACAAAAAGCGCGCCGCGCTTGGCACGAGATATGGCAACCAAGAAAACGATGGACGACGCTCGCAGGGAACGGCTGGTCGCCCTGGAGCAGAAAATTCGCGACCCGGCCAGCATCGGCAACATCGAATGCCTGCTGGACACGCTGACCGCCCTCGTGGCGGACTGCGATCACGACAATGTGAAGATCATCAAAAACATCGAAACTTTCATCAAACGCTATAAAAGTCTAGCGACTGACATCACCAGCCTGCGCATGAACC]
[+] EMBL BM587373 [CCGCCCACGCGTCCGGCTTGCTGCGGCGCGGAACAAACAAACCCGATCGACGATAGAGAGAGAGAGAAAGAGAGTGAGGGTTTTGCGGCAACGGCGGTGGGTGTCATCGCTTCTTCTTCTACTTCTTCGCTTCCACCCTCTATCAACCATCCAACTCCAATATACCCCGTCGTCGTCATCGTGCGTCGTCGTCCCCTCGCCCAACGTGCGGGAAGATCTTGCCGTAACACTGCGTGCACGTGCGTGTGTGTGTGTGCGCGCGCGTGCCCGACCCGTGTGCGTGTGCATACAGCAGCAGGGCAGGCAGGCAGGCAGTGATTTATCAAATGTAAAACAATAATTAAACACATTGGACGCACACACACACCACCACCATCTACACACACACAAGCACCCATCCGCCCGAGACAACAACCACCCACAACAAAAAGCGCGCCGCGCTTGGCACGAGATATGGCAACCAAGAAAACGATGGACGACGCTCGCAGGGAACGGCTGGTCGCCCTGGAGCAGAAAATTCGCGACCCGGCCAGCATCGGCAACATCGAATGCCTGCTGGACACGCTGACCGCCCTCGTGGCGGACTGCGATCACGACAATGTGAAGATCATCAAAAACATCGAAACTTTCATCAAACGCTATAAAAGTCTAGCGACTGACATCACCAGCCTGCGCATGAACC]
consensusID : consensus_3054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[CCGCCCACGCGTCCGGTCCACGCGTGCTCCCGAGGTGGCGTAACCTGAGGTGATTTGAGATTCAAAATTTTACAGTTGTGCTGCTGCTGTGTGTATGCGTGTGTGTCACCCTAAGGGAAAGGGAAAAAGGAAAAGGGGTCAAAGGTGTGGTTTGGCATTTGCTAATCGATTTTTAAACTACCGGTGACCCGTGATGAAAGTAATAGCAGACCAAGACCTGTGGTGTGTTGTGCCGTTGTGACCTATTGAAATCCATCCAGTGCAAGTGCAAGTGCGTGTCTGCAAATGCAAATTCACAGTGAGAGGCGCCTTGTGTTTTTGTGTTCTACAACCAACGCCACAGTAACGCGTTAAAAGGCGCACGAGGCTTGACAGCGTGACCGCAGCAGCAGCAGTGTCGTTTGTGTTGTGCCAGCTCGCGCAAAAACAAGAAAAGCCTTTCTTGTGGGGTTGTTGAGTGACGGAGGAATTAGGTGGACTACGCTCACAGGGAACGGCTGGTCGCCCTGGAGCAGAAAATTCGCGACCCGGCCAGCATCGGCAACATCGAATGCCTGCTGGACACGCTGACCGCCCTCGTGGCGGACTGCGATCACGACAATGTGAAGATCATCCAAAACATCGAAACTTTCATCAAACGCTATAAAAGTCTAGCGACTGACATCACCAGCCTGC]
[+] EMBL BM613042 [CCGCCCACGCGTCCGGTCCACGCGTGCTCCCGAGGTGGCGTAACCTGAGGTGATTTGAGATTCAAAATTTTACAGTTGTGCTGCTGCTGTGTGTATGCGTGTGTGTCACCCTAAGGGAAAGGGAAAAAGGAAAAGGGGTCAAAGGTGTGGTTTGGCATTTGCTAATCGATTTTTAAACTACCGGTGACCCGTGATGAAAGTAATAGCAGACCAAGACCTGTGGTGTGTTGTGCCGTTGTGACCTATTGAAATCCATCCAGTGCAAGTGCAAGTGCGTGTCTGCAAATGCAAATTCACAGTGAGAGGCGCCTTGTGTTTTTGTGTTCTACAACCAACGCCACAGTAACGCGTTAAAAGGCGCACGAGGCTTGACAGCGTGACCGCAGCAGCAGCAGTGTCGTTTGTGTTGTGCCAGCTCGCGCAAAAACAAGAAAAGCCTTTCTTGTGGGGTTGTTGAGTGACGGAGGAATTAGGTGGACTACGCTCACAGGGAACGGCTGGTCGCCCTGGAGCAGAAAATTCGCGACCCGGCCAGCATCGGCAACATCGAATGCCTGCTGGACACGCTGACCGCCCTCGTGGCGGACTGCGATCACGACAATGTGAAGATCATCCAAAACATCGAAACTTTCATCAAACGCTATAAAAGTCTAGCGACTGACATCACCAGCCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3054#0 CCGCCCACGCGTCCGGCTTGC-TGCGGCGCGGAACAAACA-AACCCGATCGACGATAGAG 58
consensus_3054#1 CCGCCCACGCGTCCGGTCCACGCGTGCTCCCGAGGTGGCGTAACCTGA--GGTGATTT-- 56
**************** * * * * ** * **** ** * ***
consensus_3054#0 AGAGAGAGAAAGAGAGTGAGGGTTTTGCGGCAACGGCG-GTGGGTGTCATCGCTTCTTCT 117
consensus_3054#1 ---GAGATTCAAAATTTTACAGTTGTGCTGCTGCTGTGTGTATGCGTGTGTGTCACCCTA 113
**** * * * * *** *** ** * * * ** * ** * *
consensus_3054#0 TCTACTTCTTCGCTTCCACCCTCTATCAACCATCCAACTCCAATATACCCCGTCGTCGTC 177
consensus_3054#1 AGGGAAAGGGAAAAAGGAAAAGGGGTCAAAGGTGTGGTTTGGCATTTGCTAATCGAT-TT 172
* **** * * * * *** *
consensus_3054#0 ATCGTGCGTCGTCGTCCCCTCGCCCAACGTGCGGGAAGATCTTG--CCGTAACACTGCGT 235
consensus_3054#1 TTAAACTACCGGTGACCCGT-GATGAAAGTAATAGCAGACCAAGACCTGTGGTGTGTTGT 231
* ** * *** * * ** ** * *** * * * ** **
consensus_3054#0 GCACGTGCGTGTGTGTGTGTGCGCGCGCGTGCCCGACCCGTGTGCGTGTGCATACA-GCA 294
consensus_3054#1 GCCGTTGTG-ACCTATTGAAATCCATCCAGTGCAAGTGCAAGTGCGTGTCTGCAAATGCA 290
** ** * * * * * * * ******** * * ***
consensus_3054#0 GCAGGGCAGGCAGGCAGGCAGTG-ATTTATCAAATGTAAAACAATAATTA----AACACA 349
consensus_3054#1 AATTCACAGTGAGAGGCGCCTTGTGTTTTTGTGTTCTACAACCAACGCCACAGTAACGCG 350
*** ** ** ** *** * * ** *** * * *** *
consensus_3054#0 TTGGACG-CACACACACACCACCACCATCTACACACACACAAGCACCCATCCGCCCGAGA 408
consensus_3054#1 TTAAAAGGCGCACGAGGCTTGACAGCGTGACCGCA-GCAGCAGCAGTGTCGTTTGTGTTG 409
** * * * *** ** * * * ** ** **** *
consensus_3054#0 CAACAACCACCCACAACAAAAAGCGCGCCGCGCTTGGCACGAGATATGGCAACCAAGAAA 468
consensus_3054#1 TGCCAGCTCGCGCAAAAACAAGAAAAGCCTTTCTTGTGGGGTTGTTGAGTGACGGAGGAA 469
** * * ** * ** *** **** * * * ** ** **
consensus_3054#0 AC-GATGGACGACGCTCGCAGGGAACGGCTGGTCGCCCTGGAGCAGAAAATTCGCGACCC 527
consensus_3054#1 TTAGGTGGACTACGCTCACAGGGAACGGCTGGTCGCCCTGGAGCAGAAAATTCGCGACCC 529
* ***** ****** ******************************************
consensus_3054#0 GGCCAGCATCGGCAACATCGAATGCCTGCTGGACACGCTGACCGCCCTCGTGGCGGACTG 587
consensus_3054#1 GGCCAGCATCGGCAACATCGAATGCCTGCTGGACACGCTGACCGCCCTCGTGGCGGACTG 589
************************************************************
consensus_3054#0 CGATCACGACAATGTGAAGATCATCAAAAACATCGAAACTTTCATCAAACGCTATAAAAG 647
consensus_3054#1 CGATCACGACAATGTGAAGATCATCCAAAACATCGAAACTTTCATCAAACGCTATAAAAG 649
************************* **********************************
consensus_3054#0 TCTAGCGACTGACATCACCAGCCTGCGCATGAACC 682
consensus_3054#1 TCTAGCGACTGACATCACCAGCCTGC--------- 675
**************************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||