cluster # 3063

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Anopheles gambiae
cluster # 3063 cluster # 3063 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3063#0 length = 544 sequences # 1

consensus_3063#1 length = 373 sequences # 1

consensusID : consensus_3063#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [CCGCGACACGTTACGCTAAAACCACGAAAGCAATAGGAGTTAGAATTCCCTCGCTCACAGTGCTGCGCGTTTCATTTCCCCCTTTCTTGCGTTGCGCTGGTCGAATGGTTGGGACGCTTGCTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGTATTTATGATATGCGAACGCGGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGCCTGGCCGTTGTTGCGTAGTTGCGTAGTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGTACGTAAACTATTGAACAGGCTGACCGCCACCTAGCGGCGAAGAATACGATATTTTGTTCATTTCAACTGCTCCACTGGTCAACTTTCGCTTTTCGGCCAGCAATAATCGGGCTAGATGTTTCGAAACGTTGTTAAACACTACCACACACTCGAGAAACCGGTGCAGCGTGTGCGAAACCTCTGTTTGATAGCGAAATTAAAACGTTTTTTTTTGTTTCATTTTATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGGCAACG]

[+] EMBL BM584175             [CCGCGACACGTTACGCTAAAACCACGAAAGCAATAGGAGTTAGAATTCCCTCGCTCACAGTGCTGCGCGTTTCATTTCCCCCTTTCTTGCGTTGCGCTGGTCGAATGGTTGGGACGCTTGCTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGTATTTATGATATGCGAACGCGGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGCCTGGCCGTTGTTGCGTAGTTGCGTAGTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGTACGTAAACTATTGAACAGGCTGACCGCCACCTAGCGGCGAAGAATACGATATTTTGTTCATTTCAACTGCTCCACTGGTCAACTTTCGCTTTTCGGCCAGCAATAATCGGGCTAGATGTTTCGAAACGTTGTTAAACACTACCACACACTCGAGAAACCGGTGCAGCGTGTGCGAAACCTCTGTTTGATAGCGAAATTAAAACGTTTTTTTTTGTTTCATTTTATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGGCAACG]




>consensus_3063#0
CCGCGACACGTTACGCTAAAACCACGAAAGCAATAGGAGTTAGAATTCCCTCGCTCACAG
TGCTGCGCGTTTCATTTCCCCCTTTCTTGCGTTGCGCTGGTCGAATGGTTGGGACGCTTG
CTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGTATTTATGATATGCGAACGC
GGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGCCTGGCCGTTGTTGCGTAGTTGCG
TAGTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGTACGTAAACTATTGAACAG
GCTGACCGCCACCTAGCGGCGAAGAATACGATATTTTGTTCATTTCAACTGCTCCACTGG
TCAACTTTCGCTTTTCGGCCAGCAATAATCGGGCTAGATGTTTCGAAACGTTGTTAAACA
CTACCACACACTCGAGAAACCGGTGCAGCGTGTGCGAAACCTCTGTTTGATAGCGAAATT
AAAACGTTTTTTTTTGTTTCATTTTATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGGC
AACG

consensusID : consensus_3063#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [CCGCCCACGCGTCCGCTTGCTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGCATTTATGATATGCGAACGCGGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGGCTGGCCGTTGTTGCGTAGTTGCGTGTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGTACGTAAACTATTGAACAGGCTGACCGCCACCTAGCGGCGAAGAATACGATACGAAAACGTTTTTTTGTTTCATTTTATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGGCAACGTGGCCAGCTTGTCGTGTCTCGCTTGGCGCGATCTAAACGTCGTCGAAGCGGGGAGGGCGGTCTATTGGCAGCTTTAGC]

[+] EMBL BM601346             [CCGCCCACGCGTCCGCTTGCTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGCATTTATGATATGCGAACGCGGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGGCTGGCCGTTGTTGCGTAGTTGCGTGTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGTACGTAAACTATTGAACAGGCTGACCGCCACCTAGCGGCGAAGAATACGATACGAAAACGTTTTTTTGTTTCATTTTATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGGCAACGTGGCCAGCTTGTCGTGTCTCGCTTGGCGCGATCTAAACGTCGTCGAAGCGGGGAGGGCGGTCTATTGGCAGCTTTAGC]




>consensus_3063#1
CCGCCCACGCGTCCGCTTGCTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGC
ATTTATGATATGCGAACGCGGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGGCTGG
CCGTTGTTGCGTAGTTGCGTGTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGT
ACGTAAACTATTGAACAGGCTGACCGCCACCTAGCGGCGAAGAATACGATACGAAAACGT
TTTTTTGTTTCATTTTATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGGCAACGTGGCC
AGCTTGTCGTGTCTCGCTTGGCGCGATCTAAACGTCGTCGAAGCGGGGAGGGCGGTCTAT
TGGCAGCTTTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3063#0      CCGCGACACGTTACGCTAAAACCACGAAAGCAATAGGAGTTAGAATTCCCTCGCTCACAG 60
consensus_3063#1      ------------------------------------------------------------
                                                                                  

consensus_3063#0      TGCTGCGCGTTTCATTTCCCCCTTTCTTGCGTTGCGCTGGTCGAATGGTTGGGACGCTTG 120
consensus_3063#1      -----------------------------------------CCGCCCACGCGTCCGCTTG 19
                                                               *         *  ******

consensus_3063#0      CTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGTATTTATGATATGCGAACGC 180
consensus_3063#1      CTTGAAGGGCTTGCGCGCATATAGGGTAGCGACTAAGCGGCATTTATGATATGCGAACGC 79
                      **************************************** *******************

consensus_3063#0      GGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGCCTGGCCGTTGTTGCGTAGTTGCG 240
consensus_3063#1      GGCTCAATAGAATAAAATAAGTTAGCAGCCGCCCTGGCTGGCCGTTGTTGCGTAGTTGCG 139
                      ************************************ ***********************

consensus_3063#0      TAGTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGTACGTAAACTATTGAACAG 300
consensus_3063#1      T-GTTTGTTTTGCCTTACAGCGCGTACACTCGCTGGCGTGGTACGTAAACTATTGAACAG 198
                      * **********************************************************

consensus_3063#0      GCTGACCGCCACCTAGCGGCGAAGAATACGATATTTTGTTCATTTCAACTGCTCCACTG- 359
consensus_3063#1      GCTGACCGCCACCTAGCGGCGAAGAATACGATACGAAAACGTTTTT--TTGTTTCATTTT 256
                      *********************************         ***    ** * ** *  

consensus_3063#0      GTCAACTTTCGCTTTTCGGCCAGCAATAATCGGGCTAGATGTTTCGAAACGTTGTTAAAC 419
consensus_3063#1      ATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGGCAACGTGGC-CAGCTTGTCGTGTCTC 315
                       *   ****   *** *   *    *      *** *  **   *     ** **    *

consensus_3063#0      ACTACCACACACTCGAGAAACCGGTGCAGCGTGTGCGAAACCTCTGTTTGATAGCGAAAT 479
consensus_3063#1      GCT-TGGCGCGATCTAAACGTCGTCGAAGCG-----GGGAGGGCGGTCTATTGGCAGCTT 369
                       **    * *  ** * *   **  * ****     *  *   * ** *  * **    *

consensus_3063#0      TAAAACGTTTTTTTTTGTTTCATTTTATTTCCTTTTCTTTTCCCCTCTTTCACGTCTTGG 539
consensus_3063#1      TAGC-------------------------------------------------------- 373
                      **                                                          

consensus_3063#0      CAACG 544
consensus_3063#1      -----