cluster # 3070

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3070 cluster # 3070 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3070#0 length = 831 sequences # 1

consensus_3070#1 length = 409 sequences # 1

consensusID : consensus_3070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 831
fasta sequence

                              [TTTTTTTTTTTGGATTATGTCTATTTTGTCGCGTCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCCTGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATGATTGAAAATGGTTCCGCGGTTTGGCTTGTGAATAGAGAAGAACCCCTTTTTTCACTCCAAACACTCCCGCAATGATTGGATGCAGTTTAGTTTCGACAATTAAATGGATTCAATGGAGAAATAAAACAAATCACTTAAAACGTTTAAACCCACGTGACAACAACAAGCAGCTTAGAAGGGGTACGTAAATGCAACTAAAGTAAACTATTCTAATGTGCCCCCGGGAGCCGTCTTACCTACATTGCAATTCGATTCGAATTCTAGCTCCGTATTGCTCTCCTTCCCGACCGTTCTCGTGACAAATTAACGAACGATTCTTCAACATCGAAACCAATGTTGTTTAAACCTGGCTGCAAAATCAAACTCTGCTCTTCAACGATCGGGTGGTGCGCAGTATTTGCTGTGAACTCTTGTGCAACCTCTTGGCATGAGGTGGGGGGGTAGGAGATGTTATGAATGGCCATCGATCCATTCTACCTCCCCAGTTGCCGCCATAT]

[+] EMBL CNS08PAA             [TTTTTTTTTTTGGATTATGTCTATTTTGTCGCGTCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCCTGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATGATTGAAAATGGTTCCGCGGTTTGGCTTGTGAATAGAGAAGAACCCCTTTTTTCACTCCAAACACTCCCGCAATGATTGGATGCAGTTTAGTTTCGACAATTAAATGGATTCAATGGAGAAATAAAACAAATCACTTAAAACGTTTAAACCCACGTGACAACAACAAGCAGCTTAGAAGGGGTACGTAAATGCAACTAAAGTAAACTATTCTAATGTGCCCCCGGGAGCCGTCTTACCTACATTGCAATTCGATTCGAATTCTAGCTCCGTATTGCTCTCCTTCCCGACCGTTCTCGTGACAAATTAACGAACGATTCTTCAACATCGAAACCAATGTTGTTTAAACCTGGCTGCAAAATCAAACTCTGCTCTTCAACGATCGGGTGGTGCGCAGTATTTGCTGTGAACTCTTGTGCAACCTCTTGGCATGAGGTGGGGGGGTAGGAGATGTTATGAATGGCCATCGATCCATTCTACCTCCCCAGTTGCCGCCATAT]




>consensus_3070#0
TTTTTTTTTTTGGATTATGTCTATTTTGTCGCGTCCTTCGTTCCGCTCAACTTACACACA
CACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATT
TTCACTACTAGCTCCCCTGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATA
CCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTA
ACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAA
GAATTAAACCCCTCGCCACACATTCCCGATGATGATTGAAAATGGTTCCGCGGTTTGGCT
TGTGAATAGAGAAGAACCCCTTTTTTCACTCCAAACACTCCCGCAATGATTGGATGCAGT
TTAGTTTCGACAATTAAATGGATTCAATGGAGAAATAAAACAAATCACTTAAAACGTTTA
AACCCACGTGACAACAACAAGCAGCTTAGAAGGGGTACGTAAATGCAACTAAAGTAAACT
ATTCTAATGTGCCCCCGGGAGCCGTCTTACCTACATTGCAATTCGATTCGAATTCTAGCT
CCGTATTGCTCTCCTTCCCGACCGTTCTCGTGACAAATTAACGAACGATTCTTCAACATC
GAAACCAATGTTGTTTAAACCTGGCTGCAAAATCAAACTCTGCTCTTCAACGATCGGGTG
GTGCGCAGTATTTGCTGTGAACTCTTGTGCAACCTCTTGGCATGAGGTGGGGGGGTAGGA
GATGTTATGAATGGCCATCGATCCATTCTACCTCCCCAGTTGCCGCCATAT

consensusID : consensus_3070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [TTTTTTTTTTNNTTTTTTTTATTTTTGGAATTTGTGTCTATTTTGTCGCGTCCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCTGGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATCATTGAAAATGGTTCCGTCGTTTGGCTTGTGAATAGAGATAACCCCCTGTGCCGATCT]

[-] EMBL BX466386             [TTTTTTTTTTNNTTTTTTTTATTTTTGGAATTTGTGTCTATTTTGTCGCGTCCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCTGGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATCATTGAAAATGGTTCCGTCGTTTGGCTTGTGAATAGAGATAACCCCCTGTGCCGATCT]




>consensus_3070#1
TTTTTTTTTTNNTTTTTTTTATTTTTGGAATTTGTGTCTATTTTGTCGCGTCCCTTCGTT
CCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTT
TATCATTAGCTTATCATTTTCACTACTAGCTCCCTGGCCCGAGTCTCCGTTTGCGTCCCG
TAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCT
TCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGG
CCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATCATTGAAAA
TGGTTCCGTCGTTTGGCTTGTGAATAGAGATAACCCCCTGTGCCGATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3070#0      ---------------TTTTTTTTTTTGGA--TTATGTCTATTTTGTCGCGTCC-TTCGTT 42
consensus_3070#1      TTTTTTTTTTNNTTTTTTTTATTTTTGGAATTTGTGTCTATTTTGTCGCGTCCCTTCGTT 60
                                     ***** ********  ** ******************* ******

consensus_3070#0      CCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTT 102
consensus_3070#1      CCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTT 120
                      ************************************************************

consensus_3070#0      TATCATTAGCTTATCATTTTCACTACTAGCTCCCCTGCCCGAGTCTCCGTTTGCGTCCCG 162
consensus_3070#1      TATCATTAGCTTATCATTTTCACTACTAGCTCCCTGGCCCGAGTCTCCGTTTGCGTCCCG 180
                      **********************************  ************************

consensus_3070#0      TAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCT 222
consensus_3070#1      TAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCT 240
                      ************************************************************

consensus_3070#0      TCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGG 282
consensus_3070#1      TCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGG 300
                      ************************************************************

consensus_3070#0      CCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATGATTGAAAA 342
consensus_3070#1      CCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATCATTGAAAA 360
                      *************************************************** ********

consensus_3070#0      TGGTTCCGCGGTTTGGCTTGTGAATAGAGAAGAACCCCTTTTTTCACTCCAAACACTCCC 402
consensus_3070#1      TGGTTCCGTCGTTTGGCTTGTGAATAGAGAT-AACCCCCTGTGCCGATCT---------- 409
                      ********  ********************  ****** * *  *  **           

consensus_3070#0      GCAATGATTGGATGCAGTTTAGTTTCGACAATTAAATGGATTCAATGGAGAAATAAAACA 462
consensus_3070#1      ------------------------------------------------------------
                                                                                  

consensus_3070#0      AATCACTTAAAACGTTTAAACCCACGTGACAACAACAAGCAGCTTAGAAGGGGTACGTAA 522
consensus_3070#1      ------------------------------------------------------------
                                                                                  

consensus_3070#0      ATGCAACTAAAGTAAACTATTCTAATGTGCCCCCGGGAGCCGTCTTACCTACATTGCAAT 582
consensus_3070#1      ------------------------------------------------------------
                                                                                  

consensus_3070#0      TCGATTCGAATTCTAGCTCCGTATTGCTCTCCTTCCCGACCGTTCTCGTGACAAATTAAC 642
consensus_3070#1      ------------------------------------------------------------
                                                                                  

consensus_3070#0      GAACGATTCTTCAACATCGAAACCAATGTTGTTTAAACCTGGCTGCAAAATCAAACTCTG 702
consensus_3070#1      ------------------------------------------------------------
                                                                                  

consensus_3070#0      CTCTTCAACGATCGGGTGGTGCGCAGTATTTGCTGTGAACTCTTGTGCAACCTCTTGGCA 762
consensus_3070#1      ------------------------------------------------------------
                                                                                  

consensus_3070#0      TGAGGTGGGGGGGTAGGAGATGTTATGAATGGCCATCGATCCATTCTACCTCCCCAGTTG 822
consensus_3070#1      ------------------------------------------------------------
                                                                                  

consensus_3070#0      CCGCCATAT 831
consensus_3070#1      ---------