cluster # 3083

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Anopheles gambiae
cluster # 3083 cluster # 3083 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3083#0 length = 714 sequences # 1

consensus_3083#1 length = 693 sequences # 1

consensusID : consensus_3083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 714
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGGAATGCGCTCTTCCTTGGCCCGTACAAAAGCTCGGAGACCAAGATCGATGTGATTCTTTGCCAGAGCGTGCAGGGCAGCCTGTACGAGCGGGAAGTGTACGAGAGGCAGAACAGAATACCGATGCCTGCCAACACCAAACGAACTGTCGGCTGGTGGGTCGATGTGGTCACATCGCGAGTAGCATCCGTGCAGGGCAAGATACGTCAGACAGCGTTCAATTCGTTCCGGCCTCGAGAAGCCATTAAGGCACCGAGTGGGACGGTAGCTAGCACCAGCTGCAATACCGCACAACGATCACTGCTCAAGCGAAATAACATGCCGCTGGCACCGGCAACCGTTGGTCCGGAAAAACAGGCACGGCAGTCAATCACTGCGGTCGAAAAGGACCAAACACCGAGCGCTAGTGTTCCGAACGACCTAGATGATGACGTTGTTGTTCTGGATTCGGACGACAATGACGAAGGTGAGAACTTGGGCACTGCTAAGGAGTCGACGGAGAATAGCAACGCAGCCAACGAACAACCCCGGCGGGGAGTTTGCGGTCGAACAAATCGGTATAGATCTGTTCCGGCTGGTGGAAGGAACGATGAAGCAAAACCAGCAAGAGAAGCGCGAAATAGAGAAAGTGTTGAAACAGGAACGCGTCACGAAAAAGCGTGTCGGGCGATCAGAATCGCAATG]

[+] EMBL BM587267             [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGGAATGCGCTCTTCCTTGGCCCGTACAAAAGCTCGGAGACCAAGATCGATGTGATTCTTTGCCAGAGCGTGCAGGGCAGCCTGTACGAGCGGGAAGTGTACGAGAGGCAGAACAGAATACCGATGCCTGCCAACACCAAACGAACTGTCGGCTGGTGGGTCGATGTGGTCACATCGCGAGTAGCATCCGTGCAGGGCAAGATACGTCAGACAGCGTTCAATTCGTTCCGGCCTCGAGAAGCCATTAAGGCACCGAGTGGGACGGTAGCTAGCACCAGCTGCAATACCGCACAACGATCACTGCTCAAGCGAAATAACATGCCGCTGGCACCGGCAACCGTTGGTCCGGAAAAACAGGCACGGCAGTCAATCACTGCGGTCGAAAAGGACCAAACACCGAGCGCTAGTGTTCCGAACGACCTAGATGATGACGTTGTTGTTCTGGATTCGGACGACAATGACGAAGGTGAGAACTTGGGCACTGCTAAGGAGTCGACGGAGAATAGCAACGCAGCCAACGAACAACCCCGGCGGGGAGTTTGCGGTCGAACAAATCGGTATAGATCTGTTCCGGCTGGTGGAAGGAACGATGAAGCAAAACCAGCAAGAGAAGCGCGAAATAGAGAAAGTGTTGAAACAGGAACGCGTCACGAAAAAGCGTGTCGGGCGATCAGAATCGCAATG]




>consensus_3083#0
CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGGAATGCGCTCTTCCTTGGCCCGTACAAA
AGCTCGGAGACCAAGATCGATGTGATTCTTTGCCAGAGCGTGCAGGGCAGCCTGTACGAG
CGGGAAGTGTACGAGAGGCAGAACAGAATACCGATGCCTGCCAACACCAAACGAACTGTC
GGCTGGTGGGTCGATGTGGTCACATCGCGAGTAGCATCCGTGCAGGGCAAGATACGTCAG
ACAGCGTTCAATTCGTTCCGGCCTCGAGAAGCCATTAAGGCACCGAGTGGGACGGTAGCT
AGCACCAGCTGCAATACCGCACAACGATCACTGCTCAAGCGAAATAACATGCCGCTGGCA
CCGGCAACCGTTGGTCCGGAAAAACAGGCACGGCAGTCAATCACTGCGGTCGAAAAGGAC
CAAACACCGAGCGCTAGTGTTCCGAACGACCTAGATGATGACGTTGTTGTTCTGGATTCG
GACGACAATGACGAAGGTGAGAACTTGGGCACTGCTAAGGAGTCGACGGAGAATAGCAAC
GCAGCCAACGAACAACCCCGGCGGGGAGTTTGCGGTCGAACAAATCGGTATAGATCTGTT
CCGGCTGGTGGAAGGAACGATGAAGCAAAACCAGCAAGAGAAGCGCGAAATAGAGAAAGT
GTTGAAACAGGAACGCGTCACGAAAAAGCGTGTCGGGCGATCAGAATCGCAATG

consensusID : consensus_3083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CCGCCCACGCGTCCGTGCGGCTTTCTCAAGGTGGACGAAACGTCTTTCAAAACCGATTCGAACATCCCGAAAGCGCCGTCCACCATTGCCAATTCAAAGATTCGTACACGCCTCAATGACTACCAGCGCAAAACGGTGCCGGCGACGACCGCTAAGACGACCACAGCGCAGCAATCCACCAAGCAGGCCACAGCGAGTAAGCAAACGTCAAGCAGCAGTAGCAGCAACAGCAGTCATATTGAACCAGCACCGTCCACCAACATGCTCAGCACTCAATCGAACATTGAGATTGTGCCCAAAGCCATGCAACCGGTACACTTTCCGCTGGGGTTGCTGCCCGGTATTGCCGACACGCCGGAGGGCGGTGAGTCGGATTGCCGGTGGATGCGGATAAAGATTGAGAACGATTTCAGCCACATGTACCTGCCGAGCTGGCAGTGCTGCGTAACGTATGGCCGCATCAAGAAAGCCATTTACGATGCCAGTCGTACGGCGCAAGCAATTCGCCTCGACAATCCTGCCCCACCGAATCAGCCTCAAAGGCGGCAGCGACCGTTCATGTATGCGCTGCCTAAGGAAGGGAATGCGCTCTTCCTTGGCCCGTACAAAAGCTCGGAGACCAAGATCGATGTGATTCTTTGCCAGAGCGTGCAGGGCAGCCTGTACGAGCGGGGAAGTGTACGAGAGGCAGAA]

[+] EMBL BM608449             [CCGCCCACGCGTCCGTGCGGCTTTCTCAAGGTGGACGAAACGTCTTTCAAAACCGATTCGAACATCCCGAAAGCGCCGTCCACCATTGCCAATTCAAAGATTCGTACACGCCTCAATGACTACCAGCGCAAAACGGTGCCGGCGACGACCGCTAAGACGACCACAGCGCAGCAATCCACCAAGCAGGCCACAGCGAGTAAGCAAACGTCAAGCAGCAGTAGCAGCAACAGCAGTCATATTGAACCAGCACCGTCCACCAACATGCTCAGCACTCAATCGAACATTGAGATTGTGCCCAAAGCCATGCAACCGGTACACTTTCCGCTGGGGTTGCTGCCCGGTATTGCCGACACGCCGGAGGGCGGTGAGTCGGATTGCCGGTGGATGCGGATAAAGATTGAGAACGATTTCAGCCACATGTACCTGCCGAGCTGGCAGTGCTGCGTAACGTATGGCCGCATCAAGAAAGCCATTTACGATGCCAGTCGTACGGCGCAAGCAATTCGCCTCGACAATCCTGCCCCACCGAATCAGCCTCAAAGGCGGCAGCGACCGTTCATGTATGCGCTGCCTAAGGAAGGGAATGCGCTCTTCCTTGGCCCGTACAAAAGCTCGGAGACCAAGATCGATGTGATTCTTTGCCAGAGCGTGCAGGGCAGCCTGTACGAGCGGGGAAGTGTACGAGAGGCAGAA]




>consensus_3083#1
CCGCCCACGCGTCCGTGCGGCTTTCTCAAGGTGGACGAAACGTCTTTCAAAACCGATTCG
AACATCCCGAAAGCGCCGTCCACCATTGCCAATTCAAAGATTCGTACACGCCTCAATGAC
TACCAGCGCAAAACGGTGCCGGCGACGACCGCTAAGACGACCACAGCGCAGCAATCCACC
AAGCAGGCCACAGCGAGTAAGCAAACGTCAAGCAGCAGTAGCAGCAACAGCAGTCATATT
GAACCAGCACCGTCCACCAACATGCTCAGCACTCAATCGAACATTGAGATTGTGCCCAAA
GCCATGCAACCGGTACACTTTCCGCTGGGGTTGCTGCCCGGTATTGCCGACACGCCGGAG
GGCGGTGAGTCGGATTGCCGGTGGATGCGGATAAAGATTGAGAACGATTTCAGCCACATG
TACCTGCCGAGCTGGCAGTGCTGCGTAACGTATGGCCGCATCAAGAAAGCCATTTACGAT
GCCAGTCGTACGGCGCAAGCAATTCGCCTCGACAATCCTGCCCCACCGAATCAGCCTCAA
AGGCGGCAGCGACCGTTCATGTATGCGCTGCCTAAGGAAGGGAATGCGCTCTTCCTTGGC
CCGTACAAAAGCTCGGAGACCAAGATCGATGTGATTCTTTGCCAGAGCGTGCAGGGCAGC
CTGTACGAGCGGGGAAGTGTACGAGAGGCAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3083#0      CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGGAATGCGC--TCTTCCTTGGCCCGTACA 58
consensus_3083#1      CCGCCCACGCGTCCGTGCGGCTTTCTCAAGGTGGACGAAACGTCTTTCAAAACCGATTCG 60
                      ***************  *     **   * * * * *     **** *    **  * * 

consensus_3083#0      AAAGCTCGGAGACCAAGATCGATGTGATTCTTTGCCAGAGCGTGCAGGGCAGCCTGTACG 118
consensus_3083#1      AACATCCCGAAAGCGCCGTCCAC------CATTGCCAA----TTCAAAG--ATTCGTACA 108
                      **    * ** * *    ** *       * ******     * **  *      **** 

consensus_3083#0      AGCGGGAAGTGTACGAGAGGCAGAACAGAATACCGATGCCTGCCAACACCAAACGAACTG 178
consensus_3083#1      CGCCTCAA-TG-ACTACCAGCGCAAAACGGTGCCGGCGACGACCGCTAAGACGACCACAG 166
                       **   ** ** ** *   **  ** *   * ***  * *  **   *  *     ** *

consensus_3083#0      TCGGCTGGTGGGTCGATGTGGTCACATCGCGAGTA-GCATCCGTGCAGGGCAAGATACGT 237
consensus_3083#1      CGCAGCAATCCACCAAGCAGGCCACA--GCGAGTAAGCAAACGTCAAGCAGCAGTAGCAG 224
                              *    * *   ** ****  ******* ***  ***  **    **   *  

consensus_3083#0      CAGACAGCGTTCAATTCGTTCCGGCCTCGAGAAGCCATTAAGGCACCGAGTGGGACGGTA 297
consensus_3083#1      CA-ACAGCAGTCATATTGAACCAGCACCGT----CCACCAACATGCTCAGC---ACTCAA 276
                      ** *****  ***  * *  ** **  **     ***  **    *  **    **   *

consensus_3083#0      GCTAGCACCAGCTGCAATACCGCACAACGATCACTGCTCAAGCGAAATAACATGCCGCTG 357
consensus_3083#1      TCGAACAT----TGAGATTGTGCCCAAAG----CCATGCAACCGGTACA-CTTTCCGCTG 327
                       * * **     **  **   ** *** *    *    *** **  * * * * ******

consensus_3083#0      GCACCGGCAACCGTTGGTCCGGAAAAACAGGCACGGCAGTCAATC--ACTGCGGTCGAAA 415
consensus_3083#1      GGGTTGCTGCCCGGTATTGCCGACACGCCGG-AGGGCGGTGAGTCGGATTGCCGGTGGAT 386
                      *    *    *** *  * * ** *  * ** * *** ** * **  * *** *  * * 

consensus_3083#0      AGGACCAAACACCGAGCGCTAGTGTTCCGAACGACCTAGATGATGACGTTGTTGTTCTGG 475
consensus_3083#1      GCGGATAAAGATTGAGAACGATT--TCAGCCACATGTACCTGCCGAGCTGGCAGTGCTGC 444
                        *   *** *  ***  * * *  ** *    *  **  **  **  * *  ** *** 

consensus_3083#0      ATT-CGGACGACAATGACGAAGGTGAGAACTTGGGCACTGCTAAGGAGTCGACGGAGAAT 534
consensus_3083#1      GTAACGTATGGCCGCATCAAGAAAGCCATTTACGATGCCAGTCGTACGGCGCAAGCAATT 504
                       *  ** * * *     * *    *  *  *  *   *   *     * **   *  * *

consensus_3083#0      AGCAACGCAGCCAACGAACAACCCCGGCGGGGAGTTTGCGGTCGAACAAATCGGTATAGA 594
consensus_3083#1      CGC--CTCGACAATCCTGCCCCACCGAATCAGCCTCAAAGGCGGCAGCGACCG-TTCATG 561
                       **  * *  * * *   *  * ***     *  *    **  * *   * ** *  *  

consensus_3083#0      TCTGTTCCGGCTGGTGGAAGGAA--CGATGAAGCAAAACCAGCAAGAGAAGCGCGAAATA 652
consensus_3083#1      TATGCGCTGCCTAAGGAAGGGAATGCGCTCTTCCTTGGCCCGTACAAAAGCTCGGAGACC 621
                      * **  * * **   * * ****  ** *    *    ** * *  * *     ** *  

consensus_3083#0      GAGA---AAGTGTTGAAACAGGAACGCGTCACGAAAAAGCGTGT-CGGGCGATCAGAATC 708
consensus_3083#1      AAGATCGATGTGATTCTTTGCCAGAGCGT-GCAGGGCAGCCTGTACGAGCGGGGAAGTGT 680
                       ***   * *** *        *  ****  *     *** *** ** ***   *     

consensus_3083#0      GCAATG------- 714
consensus_3083#1      ACGAGAGGCAGAA 693
                       * *