cluster # 3117

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3117 cluster # 3117 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3117#0 length = 585 sequences # 1

consensus_3117#1 length = 376 sequences # 1

consensusID : consensus_3117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CCCCNAGGTAACGTGGGCGTGAACGCATTGTCATNCTACTGTGTGCATTTGAAGTTAAACAGCTCGTGAAATTAAGTGGAAGTGTTTATAAATTAGGTCAATCAAGCACAACTAAAACGGAGTTTAACACTGCCAAACAAAAATGATAATGAAACAGTTAGTTTATGGGCTTGTCCTTAAACAATGTTTAATTAATTGAAACAAATCCCTATCCAGAATACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGCCCGTCCGGTGCGGTGTACGAATACTCTCCTTGAGCCACCTGCGAAAACGAAGAAGCTGCTTAGTGGCAATGCGACGAACCTCACCATTTAACCTTCTGCGCCAGGACGAGGTGTGAACGGGTGCTCATGTCTGCGCATGAGCTCCTCACGATCCAAGGACGAGTTTCGATCGGAGTGGTTTAGTCGATGGATATCGGCGTGAGCTAGCCACAAA]

[+] EMBL AL932273             [CCCCNAGGTAACGTGGGCGTGAACGCATTGTCATNCTACTGTGTGCATTTGAAGTTAAACAGCTCGTGAAATTAAGTGGAAGTGTTTATAAATTAGGTCAATCAAGCACAACTAAAACGGAGTTTAACACTGCCAAACAAAAATGATAATGAAACAGTTAGTTTATGGGCTTGTCCTTAAACAATGTTTAATTAATTGAAACAAATCCCTATCCAGAATACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGCCCGTCCGGTGCGGTGTACGAATACTCTCCTTGAGCCACCTGCGAAAACGAAGAAGCTGCTTAGTGGCAATGCGACGAACCTCACCATTTAACCTTCTGCGCCAGGACGAGGTGTGAACGGGTGCTCATGTCTGCGCATGAGCTCCTCACGATCCAAGGACGAGTTTCGATCGGAGTGGTTTAGTCGATGGATATCGGCGTGAGCTAGCCACAAA]




>consensus_3117#0
CCCCNAGGTAACGTGGGCGTGAACGCATTGTCATNCTACTGTGTGCATTTGAAGTTAAAC
AGCTCGTGAAATTAAGTGGAAGTGTTTATAAATTAGGTCAATCAAGCACAACTAAAACGG
AGTTTAACACTGCCAAACAAAAATGATAATGAAACAGTTAGTTTATGGGCTTGTCCTTAA
ACAATGTTTAATTAATTGAAACAAATCCCTATCCAGAATACCTCCGCGAAGCATCATCAC
TCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTG
GCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCC
GAATGAGCTGCCCGTCCGGTGCGGTGTACGAATACTCTCCTTGAGCCACCTGCGAAAACG
AAGAAGCTGCTTAGTGGCAATGCGACGAACCTCACCATTTAACCTTCTGCGCCAGGACGA
GGTGTGAACGGGTGCTCATGTCTGCGCATGAGCTCCTCACGATCCAAGGACGAGTTTCGA
TCGGAGTGGTTTAGTCGATGGATATCGGCGTGAGCTAGCCACAAA

consensusID : consensus_3117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [CGCACATGCCTGCCCTTTGTTGTTNTAATTTTATATTAAGATACAGCAAAAGGTGTTATGATTTATTCACATAACTTGTTGGGTATAGGATTGCCCCGCGACGTGTGGTATGAGCGAGTAATGTATTTCGTTTTCACTGTTTTCTAAACCTAAATGAGCGACTGACGATGGAGTTTTCTACGTGATAAATGTGTTCGCTATTCCTCTCCTTCAGTACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGNCCGTCCGGT]

[+] EMBL BX466883             [CGCACATGCCTGCCCTTTGTTGTTNTAATTTTATATTAAGATACAGCAAAAGGTGTTATGATTTATTCACATAACTTGTTGGGTATAGGATTGCCCCGCGACGTGTGGTATGAGCGAGTAATGTATTTCGTTTTCACTGTTTTCTAAACCTAAATGAGCGACTGACGATGGAGTTTTCTACGTGATAAATGTGTTCGCTATTCCTCTCCTTCAGTACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGNCCGTCCGGT]




>consensus_3117#1
CGCACATGCCTGCCCTTTGTTGTTNTAATTTTATATTAAGATACAGCAAAAGGTGTTATG
ATTTATTCACATAACTTGTTGGGTATAGGATTGCCCCGCGACGTGTGGTATGAGCGAGTA
ATGTATTTCGTTTTCACTGTTTTCTAAACCTAAATGAGCGACTGACGATGGAGTTTTCTA
CGTGATAAATGTGTTCGCTATTCCTCTCCTTCAGTACCTCCGCGAAGCATCATCACTCGG
TGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGT
AGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAAT
GAGCTGNCCGTCCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3117#0      CCCCNAGGTAACGTGGGCGTGAACGCATTGTCATNCTACTGTGT-GCATTTGAAGTTA-- 57
consensus_3117#1      CGCACATGCCTGCCCTTTGTTGTTNTAATTTTATATTAAGATACAGCAAAAGGTGTTATG 60
                      * *  * *          **      * * * **  **   *   ***   *  ****  

consensus_3117#0      AACAGCTCGTGAAATTAAGTGGA---AGTGTTTATAAATTAGGTCAATCAAGCACAACTA 114
consensus_3117#1      ATTTATTCACATAACTTGTTGGGTATAGGATTGCCCCGCGACGTGTGGTATGAGCGAGTA 120
                      *     **    ** *   ***    **  **        * **     * *  * * **

consensus_3117#0      AAACGGAGT-TTAACACTGCCAAACAAAAATGATAATGAAACAGTTAGTTTATGGGCTTG 173
consensus_3117#1      ATGTATTTCGTTTTCACTGTTTTCTAAACCTAA--ATGAGCGACTGACGATGGAGTTTTC 178
                      *         **  *****      ***  * *  ****   * * *   *   *  ** 

consensus_3117#0      TCCTTAAACAATGTTTAATTAATTGAAACAAATCCCTATCCAGAATACCTCCGCGAAGCA 233
consensus_3117#1      TACGTGATAAATGT---GTTCGCT------ATTCCTCTCCTTCAGTACCTCCGCGAAGCA 229
                      * * * *  *****    **   *      * ***    *   * ***************

consensus_3117#0      TCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATC 293
consensus_3117#1      TCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATC 289
                      ************************************************************

consensus_3117#0      GGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTAC 353
consensus_3117#1      GGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTAC 349
                      ************************************************************

consensus_3117#0      TGCACCCGAATGAGCTGCCCGTCCGGTGCGGTGTACGAATACTCTCCTTGAGCCACCTGC 413
consensus_3117#1      TGCACCCGAATGAGCTGNCCGTCCGGT--------------------------------- 376
                      ***************** *********                                 

consensus_3117#0      GAAAACGAAGAAGCTGCTTAGTGGCAATGCGACGAACCTCACCATTTAACCTTCTGCGCC 473
consensus_3117#1      ------------------------------------------------------------
                                                                                  

consensus_3117#0      AGGACGAGGTGTGAACGGGTGCTCATGTCTGCGCATGAGCTCCTCACGATCCAAGGACGA 533
consensus_3117#1      ------------------------------------------------------------
                                                                                  

consensus_3117#0      GTTTCGATCGGAGTGGTTTAGTCGATGGATATCGGCGTGAGCTAGCCACAAA 585
consensus_3117#1      ----------------------------------------------------