These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [TTGCATGATGGAGCACGTACTGTAATGCGTAAGATAGCTTTAGAATCTCTTTATAATCGAGAGAAAGTACGGTTTGCTTACATCTATCAAGAAAAACAGAATGATTTCATCAGCGCTTTTTCAAAACACAATCAATCGAAAGAAACACTGCTGCAGATTATTATCTTTTGGCGTCGAGATACCAAACATATTCGTTATGAATGGGTCGATCAAACTATTCTCGAAGCAGAGAAAGTCTTAGAAAACGACACACACGATCAATATTTCAACAATACAAAACAAAAACTGGATTCAATAATTCATTGCTTGCTACGATCCACGGAAGCGCTTAGTTTTGAAACGGAAGTCAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTTCAAACNGGAAACGTATCAGTTATATACCAGAGCTGCGATTACATGAATTACGCGCTGAAAAATACAATGGGACTGGTTCGTCTCCT] [+] EMBL BX627554 [TTGCATGATGGAGCACGTACTGTAATGCGTAAGATAGCTTTAGAATCTCTTTATAATCGAGAGAAAGTACGGTTTGCTTACATCTATCAAGAAAAACAGAATGATTTCATCAGCGCTTTTTCAAAACACAATCAATCGAAAGAAACACTGCTGCAGATTATTATCTTTTGGCGTCGAGATACCAAACATATTCGTTATGAATGGGTCGATCAAACTATTCTCGAAGCAGAGAAAGTCTTAGAAAACGACACACACGATCAATATTTCAACAATACAAAACAAAAACTGGATTCAATAATTCATTGCTTGCTACGATCCACGGAAGCGCTTAGTTTTGAAACGGAAGTCAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTTCAAACNGGAAACGTATCAGTTATATACCAGAGCTGCGATTACATGAATTACGCGCTGAAAAATACAATGGGACTGGTTCGTCTCCT] consensusID : consensus_3144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [CAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTCAAACGCGTATGATTAAAATAACTCGTCATCTCAGTTCCATGCCAACTGATCCTGAGGCTGGTGCATTCCTAGGTATGGACAGCTCAGATTCCGAAACATCCGTTTCGGACGTATTCGAACCAAGGATTCTTCTAGAAGAAAATTTACTCGATGGTTTACCTAATTGGCTGGATCGGTTGTTCGAAGGGACCACTCATCGATATTACATTAATTATTGGCCGGATTTTACTTCAAAATGAAACTCAATCCTTTGATAAAAGATTATCGTA] [+] EMBL BX612121 [CAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTCAAACGCGTATGATTAAAATAACTCGTCATCTCAGTTCCATGCCAACTGATCCTGAGGCTGGTGCATTCCTAGGTATGGACAGCTCAGATTCCGAAACATCCGTTTCGGACGTATTCGAACCAAGGATTCTTCTAGAAGAAAATTTACTCGATGGTTTACCTAATTGGCTGGATCGGTTGTTCGAAGGGACCACTCATCGATATTACATTAATTATTGGCCGGATTTTACTTCAAAATGAAACTCAATCCTTTGATAAAAGATTATCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3144#0 TTGCATGATGGAGCACGTACTGTAATGCGTAAGATAGCTTTAGAATCTCTTTATAATCGA 60 consensus_3144#1 ------------------------------------------------------------ consensus_3144#0 GAGAAAGTACGGTTTGCTTACATCTATCAAGAAAAACAGAATGATTTCATCAGCGCTTTT 120 consensus_3144#1 ------------------------------------------------------------ consensus_3144#0 TCAAAACACAATCAATCGAAAGAAACACTGCTGCAGATTATTATCTTTTGGCGTCGAGAT 180 consensus_3144#1 ------------------------------------------------------------ consensus_3144#0 ACCAAACATATTCGTTATGAATGGGTCGATCAAACTATTCTCGAAGCAGAGAAAGTCTTA 240 consensus_3144#1 ------------------------------------------------------------ consensus_3144#0 GAAAACGACACACACGATCAATATTTCAACAATACAAAACAAAAACTGGATTCAATAATT 300 consensus_3144#1 ------------------------------------------------------------ consensus_3144#0 CATTGCTTGCTACGATCCACGGAAGCGCTTAGTTTTGAAACGGAAGTCAAGGATCTATTT 360 consensus_3144#1 -----------------------------------------------CAAGGATCTATTT 13 ************* consensus_3144#0 GATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAA 420 consensus_3144#1 GATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAA 73 ************************************************************ consensus_3144#0 TACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACC 480 consensus_3144#1 TACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACC 133 ************************************************************ consensus_3144#0 GTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAA 540 consensus_3144#1 GTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAA 193 ************************************************************ consensus_3144#0 GACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTTCAAACNGGA--AACGTATCAGT 598 consensus_3144#1 GACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTCAAACGCGTATGATTAAAATAAC 253 ************************************* ** * * * * * consensus_3144#0 TATATACCAGAGCTGCG-ATTACATGAATTACGCGCTGAAAAATAC---AATGGGACTGG 654 consensus_3144#1 TCGTCATCTCAGTTCCATGCCAACTGATCCTGAGGCTGGTGCATTCCTAGGTATGGACAG 313 * * * ** * * * *** **** ** * * * * consensus_3144#0 TTCGTCTCCT-------------------------------------------------- 664 consensus_3144#1 CTCAGATTCCGAAACATCCGTTTCGGACGTATTCGAACCAAGGATTCTTCTAGAAGAAAA 373 ** * * consensus_3144#0 ------------------------------------------------------------ consensus_3144#1 TTTACTCGATGGTTTACCTAATTGGCTGGATCGGTTGTTCGAAGGGACCACTCATCGATA 433 consensus_3144#0 ------------------------------------------------------------ consensus_3144#1 TTACATTAATTATTGGCCGGATTTTACTTCAAAATGAAACTCAATCCTTTGATAAAAGAT 493 consensus_3144#0 ------- consensus_3144#1 TATCGTA 500 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||