cluster # 3177

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Anopheles gambiae
cluster # 3177 cluster # 3177 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3177#0 length = 703 sequences # 2

consensus_3177#1 length = 345 sequences # 1

consensusID : consensus_3177#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 703
fasta sequence

                              [CCGCCTTTATATGCTGTTGTGAACAATACGATTTGGAGTCAGCAATCCGAAAACATATTACATCATAATTAAAATAACACTCAAGACATACAGCCAAAACATGAATAAATATGTGCTTAGCGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCATCAGGCGACACAGTGGCTATCAAAATCATAAACAAGCGCGGCCGTTCCGGACGAGAATTGAAAGGACTAAGAGGAGAATGTGAAATACAGCGAAATCTTAAACATCCAAACATTATTCGTATGTTGGACTCATTCGAAACACACAATGAAATTGTAGTCGTTACTGAATATGCTAAAACAGACTTGCATAGTTTACTACGCGCTGGATCACTAGAAGAGCAAAAAACGCAACGTATCACATTTAATCTCGTATCTGCATTATATTACCTTCATTCACATCGGATACTGCATCGTGATTTAAAACCACAAAACATTCTGTTAGACCGGAAAATGTGTGCAAAATTATGTGATTTCGGATTCGCTCGAAACATGACAATGGGTACCCATGTTCTGACATCAATTAAAGGGACACCTCTTTACATGGCCCCTGAGCTTTTGGAGGCAAAACC-GTACGATCATCACGCTGATTTGTGGTCATTAGGATGTATAATCTACGAGATGCTTGCCGGTGAACCACCATTTAGTTCT]

[+] EMBL BM631844             [CCGCCTTTATATGCTGTTGTGAACAATACGATTTGGAGTCAGCAATCCGAAAACATATTACATCATAATTAAAATAACACTCAAGACATACAGCCAAAACATGAATAAATATGTGCTTAGCGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCATCAGGCGACACAGTGGCTATCAAAATCATAAACAAGCGCGGCCGTTCCGGACGAGAATTGAAAGGACTAAGAGGAGAATGTGAAATACAGCGAAATCTTAAACATCCAAACATTATTCGTATGTTGGACTCATTCGAAACACACAATGAAATTGTAGTCGTTACTGAATATGCTAAAACAGACTTGCATAGTTTACTACGCGCTGGATCACTAGAAGAGCAAAAAACGCAACGTATCACATTTAATCTCGTATCTGCATTATATTACCTTCATTCACATCGGATACTGCATCGTGATTTAAAACCACAAAACATTCTGTTAGACCGGAAAATGTGTGCAAAATTATGTGATTTCGGATTCGCTCGAAACATGACAATGGGTACCCATGTTCTGACATCAATTAAAGGGACACCTCTTTACATGGCCCCTGAGCTTTTGGAGGCAAAACC GTACGATCATCACGCTGATTTGTGGTCATTAGGATGTATAATCTACGAGATGCTTGCCGGTGAACCACCATTTAGTTCT]
[+] EMBL BM656357             [CCG CTTTATATGCTGTTGTGAACAATACGATTTGGAGTCAGCAATCCGAAAACATATTACATCATAATTAAAATAACACTCAAGACATACAGCCAAAACATGAATAAATATGTGCTTAGCGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCATCAGGCGACACAGTGGCTATCAAAATCATAAACAAGCGCGGCCGTTCCGGACGAGAATTGAAAGGACTAAGAGGAGAATGTGAAATACAGCGAAATCTTAAACATCCAAACATTATTCGTATGTTGGACTCATTCGAAACACACAATGAAATTGTAGTCGTTACTGAATATGCTAAAACAGACTTGCATAGTTTACTACGCGCTGGATCACTAGAAGAGCAAAAAACGCAACGTATCACATTTAATCTCGTATCTGCATTATATTACCTTCATTCACATCGGATACTGCATCGTGATTTAAAACCACAAAACATTCTGTTAGACCGGAAAATGTGTGCAAAATTATGTGATTTCGGATTCGCTCGAAACATGACAATGGGTACCCATGTTCTGACATCAATTAAAGGGACACCTCTTTACATGGCCCCTGAGCTTTTGGAGGCAAAACCGGTACGATCATCACGCTGATTTGGGGTCATTAGG                                              ]




>consensus_3177#0
CCGCCTTTATATGCTGTTGTGAACAATACGATTTGGAGTCAGCAATCCGAAAACATATTA
CATCATAATTAAAATAACACTCAAGACATACAGCCAAAACATGAATAAATATGTGCTTAG
CGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCATCAGG
CGACACAGTGGCTATCAAAATCATAAACAAGCGCGGCCGTTCCGGACGAGAATTGAAAGG
ACTAAGAGGAGAATGTGAAATACAGCGAAATCTTAAACATCCAAACATTATTCGTATGTT
GGACTCATTCGAAACACACAATGAAATTGTAGTCGTTACTGAATATGCTAAAACAGACTT
GCATAGTTTACTACGCGCTGGATCACTAGAAGAGCAAAAAACGCAACGTATCACATTTAA
TCTCGTATCTGCATTATATTACCTTCATTCACATCGGATACTGCATCGTGATTTAAAACC
ACAAAACATTCTGTTAGACCGGAAAATGTGTGCAAAATTATGTGATTTCGGATTCGCTCG
AAACATGACAATGGGTACCCATGTTCTGACATCAATTAAAGGGACACCTCTTTACATGGC
CCCTGAGCTTTTGGAGGCAAAACCGTACGATCATCACGCTGATTTGTGGTCATTAGGATG
TATAATCTACGAGATGCTTGCCGGTGAACCACCATTTAGTTCT

consensusID : consensus_3177#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [GGCAGAATCGGCACGACGTTGGANTNGTAGCAAATCCGAAAACCATATTACATCATAATTAAAATAACACTCAAGAAATACAGCCTAAACATGAATAAATATGTGCTTAGCGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCATCAGGCGACACAGTGGCTATCAAAATCATAAACAAGGACAGNTTCGGCAAATCTGTTCTAGAGTAGTATTTTCTCATCCGCGTTGATGTNTGCCAAGGGAATTCCGTTGTAAGAGCACAGGTCGATGAAGTTTCGTAAGCGCAAGGTGTATGAATATGCGAAGGTGAAGTTGCTGAACAG]

[+] EMBL BX468061             [GGCAGAATCGGCACGACGTTGGANTNGTAGCAAATCCGAAAACCATATTACATCATAATTAAAATAACACTCAAGAAATACAGCCTAAACATGAATAAATATGTGCTTAGCGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCATCAGGCGACACAGTGGCTATCAAAATCATAAACAAGGACAGNTTCGGCAAATCTGTTCTAGAGTAGTATTTTCTCATCCGCGTTGATGTNTGCCAAGGGAATTCCGTTGTAAGAGCACAGGTCGATGAAGTTTCGTAAGCGCAAGGTGTATGAATATGCGAAGGTGAAGTTGCTGAACAG]




>consensus_3177#1
GGCAGAATCGGCACGACGTTGGANTNGTAGCAAATCCGAAAACCATATTACATCATAATT
AAAATAACACTCAAGAAATACAGCCTAAACATGAATAAATATGTGCTTAGCGATCTCATT
GGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCATCAGGCGACACAGTG
GCTATCAAAATCATAAACAAGGACAGNTTCGGCAAATCTGTTCTAGAGTAGTATTTTCTC
ATCCGCGTTGATGTNTGCCAAGGGAATTCCGTTGTAAGAGCACAGGTCGATGAAGTTTCG
TAAGCGCAAGGTGTATGAATATGCGAAGGTGAAGTTGCTGAACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3177#0      CCGCCTTTATATGCTGTTGTGAACAATACGAT-TTGGAGTC--AGCAA-TCCGAAAAC-A 55
consensus_3177#1      ---------------GGCAGAATCGGCACGACGTTGGANTNGTAGCAAATCCGAAAACCA 45
                                     *     * *   ****  ***** *   ***** ********* *

consensus_3177#0      TATTACATCATAATTAAAATAACACTCAAGACATACAGCCAAAACATGAATAAATATGTG 115
consensus_3177#1      TATTACATCATAATTAAAATAACACTCAAGAAATACAGCCTAAACATGAATAAATATGTG 105
                      ******************************* ******** *******************

consensus_3177#0      CTTAGCGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCA 175
consensus_3177#1      CTTAGCGATCTCATTGGAGAAGGTTCATTTGGAAAAGTTTATAAAGCTGTTGAGAAAGCA 165
                      ************************************************************

consensus_3177#0      TCAGGCGACACAGTGGCTATCAAAATCATAAACAAGCGCGGCCGTTCCGGACGAGAATTG 235
consensus_3177#1      TCAGGCGACACAGTGGCTATCAAAATCATAAACAAG---GACAGNTTCG---GCAAATCT 219
                      ************************************   * * * * **   *  ***  

consensus_3177#0      AAAGGACTAAGAGGAGAATGTGAAATACAGCGAAATCTTAAACATCCAAACATTATTCGT 295
consensus_3177#1      ----GTTCTAGAGTAGTATTTTCTCATCCGCG----TTGATGTNTGCCAAGGGAATTCCG 271
                          *    **** ** ** *      * ***     * *    * * **    ****  

consensus_3177#0      ATGTTGGA-CTCATTCGAAACACACAATGAAATTGTAGTCGTTACTGAATATGCTAAAAC 354
consensus_3177#1      TTGTAAGAGCACAGGTCGATGAAGTTTCGTAAGCGCAAG-GTGTATGAATATGCGAAGGT 330
                       ***  ** * **     *  *      * **  * *   **   ********* **   

consensus_3177#0      AGACTTGCATAGTTTACTACGCGCTGGATCACTAGAAGAGCAAAAAACGCAACGTATCAC 414
consensus_3177#1      GAAGTTGCTGAACAG--------------------------------------------- 345
                        * ****  *                                                 

consensus_3177#0      ATTTAATCTCGTATCTGCATTATATTACCTTCATTCACATCGGATACTGCATCGTGATTT 474
consensus_3177#1      ------------------------------------------------------------
                                                                                  

consensus_3177#0      AAAACCACAAAACATTCTGTTAGACCGGAAAATGTGTGCAAAATTATGTGATTTCGGATT 534
consensus_3177#1      ------------------------------------------------------------
                                                                                  

consensus_3177#0      CGCTCGAAACATGACAATGGGTACCCATGTTCTGACATCAATTAAAGGGACACCTCTTTA 594
consensus_3177#1      ------------------------------------------------------------
                                                                                  

consensus_3177#0      CATGGCCCCTGAGCTTTTGGAGGCAAAACCGTACGATCATCACGCTGATTTGTGGTCATT 654
consensus_3177#1      ------------------------------------------------------------
                                                                                  

consensus_3177#0      AGGATGTATAATCTACGAGATGCTTGCCGGTGAACCACCATTTAGTTCT 703
consensus_3177#1      -------------------------------------------------