cluster # 3180

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Anopheles gambiae
cluster # 3180 cluster # 3180 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3180#0 length = 721 sequences # 1

consensus_3180#1 length = 624 sequences # 2

consensusID : consensus_3180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [CCGAGAAGATATGGCATTACTCGCGTATAGTTTGCTTCTTCCCCTATTGAAGCTTTATTGATACGATTTTTTTATTTGAGACATTGCCTGCCTTTAAAGCGAAACAAGCAAGAGGTATCTTAAATCAACCAAACTCAGAGCCAAACCCATGCGAGAGATTGTTTGTGTGAAACATAGCATCAAGAGCAAGCTAAACCAAGAAACGGTCAGGAGTGAACGGACGGATAAAAATAATATTCATAATACATATCATTTAAGCTTAGACTTTATGACCGGTTTTATGAAAAGGTATATTTTTTATTGTGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCGACGCTGTCCGATTTTAAAATTCGACAACGGTTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTACGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGTGGGTGGCTGA]

[+] EMBL BM631565             [CCGAGAAGATATGGCATTACTCGCGTATAGTTTGCTTCTTCCCCTATTGAAGCTTTATTGATACGATTTTTTTATTTGAGACATTGCCTGCCTTTAAAGCGAAACAAGCAAGAGGTATCTTAAATCAACCAAACTCAGAGCCAAACCCATGCGAGAGATTGTTTGTGTGAAACATAGCATCAAGAGCAAGCTAAACCAAGAAACGGTCAGGAGTGAACGGACGGATAAAAATAATATTCATAATACATATCATTTAAGCTTAGACTTTATGACCGGTTTTATGAAAAGGTATATTTTTTATTGTGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCGACGCTGTCCGATTTTAAAATTCGACAACGGTTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTACGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGTGGGTGGCTGA]




>consensus_3180#0
CCGAGAAGATATGGCATTACTCGCGTATAGTTTGCTTCTTCCCCTATTGAAGCTTTATTG
ATACGATTTTTTTATTTGAGACATTGCCTGCCTTTAAAGCGAAACAAGCAAGAGGTATCT
TAAATCAACCAAACTCAGAGCCAAACCCATGCGAGAGATTGTTTGTGTGAAACATAGCAT
CAAGAGCAAGCTAAACCAAGAAACGGTCAGGAGTGAACGGACGGATAAAAATAATATTCA
TAATACATATCATTTAAGCTTAGACTTTATGACCGGTTTTATGAAAAGGTATATTTTTTA
TTGTGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGA
CCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAAC
CGACCGATGCGACGCTGTCCGATTTTAAAATTCGACAACGGTTTAGGGCATTCGGAAGCG
TTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGA
TGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTA
CGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTC
AGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGTGGGTGGCTG
A

consensusID : consensus_3180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence

                              [GCTCTTGGAGTTCATCCTTTAATAACATTCACAATTCTTTGACCTTGTGTACTAAGAACGAAATATGTACGTGCGGCACACCATTCTAGGCATCGCGATCGCTTGCACTTGCAATCCTTCCCCGCGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCAACGCTGTCCGATTTCAAAACCCGGCAACGGCTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTAAGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGAGGGTGGCTGATCTTGAGATCTGCACCAAGGAAAACAAACAACCAAACAAATGAAACCAAAAACAAACTACCAACTAAATATTGCATTTCACA]

[+] EMBL BX617925             [GCTCTTGGAGTTCATCCTTTAATAACATTCACAATTCTTTGACCTTGTGTACTAAGAACGAAATATGTACGTGCGGCACACCATTCTAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX611630             [                                           ccTGTGTACTAAGAACGAAATATGTACGTGCGGCACACCATTTTAGGCATCGCGATCGCTTGCACTTGCAATCCTTCCCCGCGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCAACGCTGTCCGATTTCAAAACCCGGCAACGGCTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTAAGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGAGGGTGGCTGATCTTGAGATCTGCACCAAGGAAAACAAACAACCAAACAAATGAAACCAAAAACAAACTACCAACTAAATATTGCATTTCACA]




>consensus_3180#1
GCTCTTGGAGTTCATCCTTTAATAACATTCACAATTCTTTGACCTTGTGTACTAAGAACG
AAATATGTACGTGCGGCACACCATTCTAGGCATCGCGATCGCTTGCACTTGCAATCCTTC
CCCGCGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAG
ACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAA
CCGACCGATGCAACGCTGTCCGATTTCAAAACCCGGCAACGGCTTAGGGCATTCGGAAGC
GTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAG
ATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTT
AAGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTT
CAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGAGGGTGGCT
GATCTTGAGATCTGCACCAAGGAAAACAAACAACCAAACAAATGAAACCAAAAACAAACT
ACCAACTAAATATTGCATTTCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3180#0      CCGAGAAGATATGGCATTACTCGCGTATAGTTTGCTTCTTCCCCTATTGAAGCTTTATTG 60
consensus_3180#1      ------------------------------------------------------------
                                                                                  

consensus_3180#0      ATACGATTTTTTTATTTGAGACATTGCCTGCCTTTAAAGCGAAACAAGCAAGAGGTATCT 120
consensus_3180#1      ------------------------------------------------------------
                                                                                  

consensus_3180#0      TAAATCAACCAAACTCAGAGCCAAACCCATGCGAGAGATTGTTTGTGTGAAACATAGCAT 180
consensus_3180#1      ----------------------------------------GCTCTTGGAGTTCATC-CTT 19
                                                              * *  **     ***  * *

consensus_3180#0      CAAGAGCAAGCTAAACCAAGAAACGGTCAGGAGTGAACGGACGGATAAAAATAATATTCA 240
consensus_3180#1      TAATAACATTCACAATTCTTTGACCTT-----GTGTACTAA--GAACGAAATA-TGTACG 71
                       ** * **  *  **       **  *     *** **  *  **   ***** * * * 

consensus_3180#0      TAATACATATCATTTAAGCTTAGACTTTATGACCGGTTTTATGAAAAGGTATATTTTTTA 300
consensus_3180#1      TGCGGCACACCATTC-----TAGGCATCGCGATCGCTTGCACTTGCA-----ATCCTTCC 121
                      *    ** * ****      *** * *   ** ** **  *     *     **  **  

consensus_3180#0      TTGTGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGA 360
consensus_3180#1      CCGCGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGA 181
                        * ********************************************************

consensus_3180#0      CCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAAC 420
consensus_3180#1      CCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAAC 241
                      ************************************************************

consensus_3180#0      CGACCGATGCGACGCTGTCCGATTTTAAAATTCGACAACGGTTTAGGGCATTCGGAAGCG 480
consensus_3180#1      CGACCGATGCAACGCTGTCCGATTTCAAAACCCGGCAACGGCTTAGGGCATTCGGAAGCG 301
                      ********** ************** ****  ** ****** ******************

consensus_3180#0      TTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGA 540
consensus_3180#1      TTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGA 361
                      ************************************************************

consensus_3180#0      TGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTA 600
consensus_3180#1      TGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTA 421
                      ************************************************************

consensus_3180#0      CGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTC 660
consensus_3180#1      AGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTC 481
                       ***********************************************************

consensus_3180#0      AGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGTGGGTGGCTG 720
consensus_3180#1      AGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGAGGGTGGCTG 541
                      ************************************************** *********

consensus_3180#0      A----------------------------------------------------------- 721
consensus_3180#1      ATCTTGAGATCTGCACCAAGGAAAACAAACAACCAAACAAATGAAACCAAAAACAAACTA 601
                      *                                                           

consensus_3180#0      -----------------------
consensus_3180#1      CCAACTAAATATTGCATTTCACA 624