These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [CCGAGAAGATATGGCATTACTCGCGTATAGTTTGCTTCTTCCCCTATTGAAGCTTTATTGATACGATTTTTTTATTTGAGACATTGCCTGCCTTTAAAGCGAAACAAGCAAGAGGTATCTTAAATCAACCAAACTCAGAGCCAAACCCATGCGAGAGATTGTTTGTGTGAAACATAGCATCAAGAGCAAGCTAAACCAAGAAACGGTCAGGAGTGAACGGACGGATAAAAATAATATTCATAATACATATCATTTAAGCTTAGACTTTATGACCGGTTTTATGAAAAGGTATATTTTTTATTGTGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCGACGCTGTCCGATTTTAAAATTCGACAACGGTTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTACGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGTGGGTGGCTGA] [+] EMBL BM631565 [CCGAGAAGATATGGCATTACTCGCGTATAGTTTGCTTCTTCCCCTATTGAAGCTTTATTGATACGATTTTTTTATTTGAGACATTGCCTGCCTTTAAAGCGAAACAAGCAAGAGGTATCTTAAATCAACCAAACTCAGAGCCAAACCCATGCGAGAGATTGTTTGTGTGAAACATAGCATCAAGAGCAAGCTAAACCAAGAAACGGTCAGGAGTGAACGGACGGATAAAAATAATATTCATAATACATATCATTTAAGCTTAGACTTTATGACCGGTTTTATGAAAAGGTATATTTTTTATTGTGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCGACGCTGTCCGATTTTAAAATTCGACAACGGTTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTACGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGTGGGTGGCTGA] consensusID : consensus_3180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [GCTCTTGGAGTTCATCCTTTAATAACATTCACAATTCTTTGACCTTGTGTACTAAGAACGAAATATGTACGTGCGGCACACCATTCTAGGCATCGCGATCGCTTGCACTTGCAATCCTTCCCCGCGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCAACGCTGTCCGATTTCAAAACCCGGCAACGGCTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTAAGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGAGGGTGGCTGATCTTGAGATCTGCACCAAGGAAAACAAACAACCAAACAAATGAAACCAAAAACAAACTACCAACTAAATATTGCATTTCACA] [+] EMBL BX617925 [GCTCTTGGAGTTCATCCTTTAATAACATTCACAATTCTTTGACCTTGTGTACTAAGAACGAAATATGTACGTGCGGCACACCATTCTAGGC ] [+] EMBL BX611630 [ ccTGTGTACTAAGAACGAAATATGTACGTGCGGCACACCATTTTAGGCATCGCGATCGCTTGCACTTGCAATCCTTCCCCGCGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGACCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAACCGACCGATGCAACGCTGTCCGATTTCAAAACCCGGCAACGGCTTAGGGCATTCGGAAGCGTTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGATGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTAAGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTCAGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGAGGGTGGCTGATCTTGAGATCTGCACCAAGGAAAACAAACAACCAAACAAATGAAACCAAAAACAAACTACCAACTAAATATTGCATTTCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3180#0 CCGAGAAGATATGGCATTACTCGCGTATAGTTTGCTTCTTCCCCTATTGAAGCTTTATTG 60 consensus_3180#1 ------------------------------------------------------------ consensus_3180#0 ATACGATTTTTTTATTTGAGACATTGCCTGCCTTTAAAGCGAAACAAGCAAGAGGTATCT 120 consensus_3180#1 ------------------------------------------------------------ consensus_3180#0 TAAATCAACCAAACTCAGAGCCAAACCCATGCGAGAGATTGTTTGTGTGAAACATAGCAT 180 consensus_3180#1 ----------------------------------------GCTCTTGGAGTTCATC-CTT 19 * * ** *** * * consensus_3180#0 CAAGAGCAAGCTAAACCAAGAAACGGTCAGGAGTGAACGGACGGATAAAAATAATATTCA 240 consensus_3180#1 TAATAACATTCACAATTCTTTGACCTT-----GTGTACTAA--GAACGAAATA-TGTACG 71 ** * ** * ** ** * *** ** * ** ***** * * * consensus_3180#0 TAATACATATCATTTAAGCTTAGACTTTATGACCGGTTTTATGAAAAGGTATATTTTTTA 300 consensus_3180#1 TGCGGCACACCATTC-----TAGGCATCGCGATCGCTTGCACTTGCA-----ATCCTTCC 121 * ** * **** *** * * ** ** ** * * ** ** consensus_3180#0 TTGTGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGA 360 consensus_3180#1 CCGCGAAACCCCAGTATTTGTAGATCGAACGCTATGTACGTTGTTGTGTTGGAAGTTAGA 181 * ******************************************************** consensus_3180#0 CCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAAC 420 consensus_3180#1 CCCAGAGCAAACCCATAGCTAAGTAGTAGGCCTAAATGACGTACGCTAGGAGCGGCAAAC 241 ************************************************************ consensus_3180#0 CGACCGATGCGACGCTGTCCGATTTTAAAATTCGACAACGGTTTAGGGCATTCGGAAGCG 480 consensus_3180#1 CGACCGATGCAACGCTGTCCGATTTCAAAACCCGGCAACGGCTTAGGGCATTCGGAAGCG 301 ********** ************** **** ** ****** ****************** consensus_3180#0 TTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGA 540 consensus_3180#1 TTCCTTCCCGTTACCGATACGAAACAATCACAATTCTTCGTAGCAGCACTTAATGAGAGA 361 ************************************************************ consensus_3180#0 TGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTA 600 consensus_3180#1 TGTAGTAGCAGTTAATCAATAACTAGATGCGGCGGCGAAAGAGAACAAATTGATCCTTTA 421 ************************************************************ consensus_3180#0 CGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTC 660 consensus_3180#1 AGTACACACTCTTTCTAAATACAACCTATGTTTGTGCGGGGGTTACGCTGAATAACGTTC 481 *********************************************************** consensus_3180#0 AGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGTGGGTGGCTG 720 consensus_3180#1 AGATCCTTTACCTTTAAGCTTCTATTAGCGATATATTGTAGCGTAATAAGAGGGTGGCTG 541 ************************************************** ********* consensus_3180#0 A----------------------------------------------------------- 721 consensus_3180#1 ATCTTGAGATCTGCACCAAGGAAAACAAACAACCAAACAAATGAAACCAAAAACAAACTA 601 * consensus_3180#0 ----------------------- consensus_3180#1 CCAACTAAATATTGCATTTCACA 624 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||