cluster # 3189

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Anopheles gambiae
cluster # 3189 cluster # 3189 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3189#0 length = 678 sequences # 2

consensus_3189#1 length = 483 sequences # 1

consensusID : consensus_3189#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 678
fasta sequence

                              [CCGCCCACGCGTCCGCGATCGGGCAGTGCGCACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTCCGTGGAGTGTGTTGCCACTGCGTTCTGTGAAGAGGTTCAGTTAAAGGAAACAGTTACACTTCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGTTTCCTGTGTTTGATCAGTCTTCGATTGATGCACGGTGCTCCCGCAGTGCCGACAAAAGAAATGATTGATTTTATGCGACGGTTTGGCTATCTGGAGAAGGGTCCTACACAGGCGGAAGCGCTGTACAGTGGGGAAGCAATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTAGATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGACGTGATGCAGCACGATCAATCATTACGCCACCGGCGGTACGTGATCGGTTCGGAGAGCTGGCGGAAACGGCGCATAACATACTTCATCGCGAACTGGTCCAGCAAGGTTGGCGAGGACGCGGTGGCCAAGTTTATGGCCAAAGCGTTCGGCGAGTGGAGCAAGTACAGCAAGCTACGGTTCGTCCGCGTGTACGACCCGTCGGCGGACATCATCGTCGGGTTCGGCAGTGGCCACCACGGGGGACAACTACCCGTT]

[+] EMBL BM634242             [CCGCCCACGCGTCCGCGATCGGGCAGTGCGCACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTCCGTGGAGTGTGTTGCCACTGCGTTCTGTGAAGAGGTTCAGTTAAAGGAAACAGTTACACTTCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGTTTCCTGTGTTTGATCAGTCTTCGATTGATGCACGGTGCTCCCGCAGTGCCGACAAAAGAAATGATTGATTTTATGCGACGGTTTGGCTATCTGGAGAAGGGTCCTACACAGGCGGAAGCGCTGTACAGTGGGGAAGCAATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTAGATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGACGTGATGCAGCACGATCAATCATTACGCCACCGGCGGTACGTGATCGGTTCGGAGAGCTGGCGGAAACGGCGCATAACATACTTCATCGCGAACTGGTCCAGCAAGGTTGGCGAGGACGCGGTGGCCAAGTTTATGGCCAAAGCGTTCGGCGAGTGG                                                                                                   ]
[+] EMBL BM643440             [            CCGCGATCGGGCAGTGCACACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTCCGTGGAGTGTGTTGCCACCGCGTTCTGTG AGAGGTTCAGTTCAAGGAAACAGTTACACTTCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGCTTCCTGTGTTTGATCAGTCTTCGATTGATGCACGGTGCTCCCGCAGTGCCGACGAAAGAAATGATTGATTTTATGCGACGGTTTGGCTATCTGGAGAAGGGTCCTACACAGGCGGAAGCGCTGTACAGTGGGGAAGCAATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTAGATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGATGTGATGCAGCACGATCAATCATTACGCCACCGGCGGTACGTGATCGGTTCGGAGAGCTGGCGGAAACGGCGCATAACATACTTCATCGCGAACTGGTCCAGCAAGGTTGGCGAGGACGCAGTGGCCAAGTTTATGGCCAAAGCGTTCGGCGAGTGGAGCAAGTACAGCAAGCTACGGTTCGTCCGCGTGTACGACCCGTCGGCGGACATCATCGTCGGGTTCGGCAGTGGCCACCACGGGGGACAACTACCCGTT]




>consensus_3189#0
CCGCCCACGCGTCCGCGATCGGGCAGTGCGCACTGGGTCGGCCCCATTTCTAACGTTCTG
TGAAAGTATTTCCGTGGAGTGTGTTGCCACTGCGTTCTGTGAAGAGGTTCAGTTAAAGGA
AACAGTTACACTTCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGTTTCCTG
TGTTTGATCAGTCTTCGATTGATGCACGGTGCTCCCGCAGTGCCGACAAAAGAAATGATT
GATTTTATGCGACGGTTTGGCTATCTGGAGAAGGGTCCTACACAGGCGGAAGCGCTGTAC
AGTGGGGAAGCAATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAG
ACGGGCGTGCTAGATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTC
GACGTGATGCAGCACGATCAATCATTACGCCACCGGCGGTACGTGATCGGTTCGGAGAGC
TGGCGGAAACGGCGCATAACATACTTCATCGCGAACTGGTCCAGCAAGGTTGGCGAGGAC
GCGGTGGCCAAGTTTATGGCCAAAGCGTTCGGCGAGTGGAGCAAGTACAGCAAGCTACGG
TTCGTCCGCGTGTACGACCCGTCGGCGGACATCATCGTCGGGTTCGGCAGTGGCCACCAC
GGGGGACAACTACCCGTT

consensusID : consensus_3189#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CCGCCCACGCGTCCGCAGCATTCGAATCCGACAGTCTAATTATGTTGCTGATGCCAACAGCATCGATCGGGCAGTGCACACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTCCGAGGAGTGTGTTTCCATCGCGTTCTGTGAAAAAATTCAGTTAAGGGAAACAGTTACACTTCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGCTTCCTGTGTTTGATCAGTCTTCGATTGATGCACGGTGCTCCCGCAGTGCCAACGAAAGAAATGATTGATTTTATGCGACGGTTTGGCTATCTGGAGAAGGGTCCAACACAGGCGGAAGCACTGTACAGTGGGGAAGCAATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTAGATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGACGTGATGCAGCAC]

[+] EMBL BM630323             [CCGCCCACGCGTCCGCAGCATTCGAATCCGACAGTCTAATTATGTTGCTGATGCCAACAGCATCGATCGGGCAGTGCACACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTCCGAGGAGTGTGTTTCCATCGCGTTCTGTGAAAAAATTCAGTTAAGGGAAACAGTTACACTTCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGCTTCCTGTGTTTGATCAGTCTTCGATTGATGCACGGTGCTCCCGCAGTGCCAACGAAAGAAATGATTGATTTTATGCGACGGTTTGGCTATCTGGAGAAGGGTCCAACACAGGCGGAAGCACTGTACAGTGGGGAAGCAATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTAGATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGACGTGATGCAGCAC]




>consensus_3189#1
CCGCCCACGCGTCCGCAGCATTCGAATCCGACAGTCTAATTATGTTGCTGATGCCAACAG
CATCGATCGGGCAGTGCACACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTC
CGAGGAGTGTGTTTCCATCGCGTTCTGTGAAAAAATTCAGTTAAGGGAAACAGTTACACT
TCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGCTTCCTGTGTTTGATCAGT
CTTCGATTGATGCACGGTGCTCCCGCAGTGCCAACGAAAGAAATGATTGATTTTATGCGA
CGGTTTGGCTATCTGGAGAAGGGTCCAACACAGGCGGAAGCACTGTACAGTGGGGAAGCA
ATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTA
GATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGACGTGATGCAG
CAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3189#0      --------------------------------------------CCGCCCACGCGTCCG- 15
consensus_3189#1      CCGCCCACGCGTCCGCAGCATTCGAATCCGACAGTCTAATTATGTTGCTGATGCCAACAG 60
                                                                    **  * **   *  

consensus_3189#0      ---CGATCGGGCAGTGCGCACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTC 72
consensus_3189#1      CATCGATCGGGCAGTGCACACTGGGTCGGCCCCATTTCTAACGTTCTGTGAAAGTATTTC 120
                         ************** ******************************************

consensus_3189#0      CGTGGAGTGTGTTGCCACTGCGTTCTGTGAAGAGGTTCAGTTAAAGGAAACAGTTACACT 132
consensus_3189#1      CGAGGAGTGTGTTTCCATCGCGTTCTGTGAAAAAATTCAGTTAAGGGAAACAGTTACACT 180
                      ** ********** ***  ************ *  ********* ***************

consensus_3189#0      TCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGTTTCCTGTGTTTGATCAGT 192
consensus_3189#1      TCCACCATGGCTCGATATCCGTTGCATTTGTTTGGCTTGTGCTTCCTGTGTTTGATCAGT 240
                      ***************************************** ******************

consensus_3189#0      CTTCGATTGATGCACGGTGCTCCCGCAGTGCCGACAAAAGAAATGATTGATTTTATGCGA 252
consensus_3189#1      CTTCGATTGATGCACGGTGCTCCCGCAGTGCCAACGAAAGAAATGATTGATTTTATGCGA 300
                      ******************************** ** ************************

consensus_3189#0      CGGTTTGGCTATCTGGAGAAGGGTCCTACACAGGCGGAAGCGCTGTACAGTGGGGAAGCA 312
consensus_3189#1      CGGTTTGGCTATCTGGAGAAGGGTCCAACACAGGCGGAAGCACTGTACAGTGGGGAAGCA 360
                      ************************** ************** ******************

consensus_3189#0      ATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTA 372
consensus_3189#1      ATTATCGATGCCATTAAGCATGTGCAGAAATTTGGCGCATTGCCACAGACGGGCGTGCTA 420
                      ************************************************************

consensus_3189#0      GATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGACGTGATGCAG 432
consensus_3189#1      GATCGAAGAACGATCGAGCTAATGTCAGCGCCCCGATGCGGCGTGGTCGACGTGATGCAG 480
                      ************************************************************

consensus_3189#0      CACGATCAATCATTACGCCACCGGCGGTACGTGATCGGTTCGGAGAGCTGGCGGAAACGG 492
consensus_3189#1      CAC--------------------------------------------------------- 483
                      ***                                                         

consensus_3189#0      CGCATAACATACTTCATCGCGAACTGGTCCAGCAAGGTTGGCGAGGACGCGGTGGCCAAG 552
consensus_3189#1      ------------------------------------------------------------
                                                                                  

consensus_3189#0      TTTATGGCCAAAGCGTTCGGCGAGTGGAGCAAGTACAGCAAGCTACGGTTCGTCCGCGTG 612
consensus_3189#1      ------------------------------------------------------------
                                                                                  

consensus_3189#0      TACGACCCGTCGGCGGACATCATCGTCGGGTTCGGCAGTGGCCACCACGGGGGACAACTA 672
consensus_3189#1      ------------------------------------------------------------
                                                                                  

consensus_3189#0      CCCGTT 678
consensus_3189#1      ------