cluster # 319

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Anopheles gambiae
cluster # 319 cluster # 319 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_319#0 length = 698 sequences # 1

consensus_319#1 length = 374 sequences # 1

consensusID : consensus_319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence

                              [TGGTTTCCATTTCCAATCATGCACAAATGCACATAACACGATCATCATCCTTTTCACGACCAACAACCACCAACAGCAACCGGACGGGACGGACGCTGATAGCAAGCACTTAATAGAAGGAAGAAACAAGAAGAAAGAAAGAAAAACAAACGCAGATATTCATATTTTATACACACACAAAACCGGAAACAAACCCCGATCAACAAACCAACAAAATCCCCCTTTCCCTGGAGATGGTATTGTAGAAGAGGAGAACATAACAACCCCGCAATCAATCGCAATCATAAAACCAAAATACAGTCAAAGTACAGTGGGCGTGTGTGCTAGGAAGTCGGAAAAACACTAAAAGAAAGGAAAAAACCCTAAAAGAAAGGAAAAAAAACCCTAAAAGAAAGCAAAAAACACTAAAAGAAAGGAAAAACCACTAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTTGTTTTTTCTATGCCGTTTTCGTA]

[+] EMBL BX618439             [TGGTTTCCATTTCCAATCATGCACAAATGCACATAACACGATCATCATCCTTTTCACGACCAACAACCACCAACAGCAACCGGACGGGACGGACGCTGATAGCAAGCACTTAATAGAAGGAAGAAACAAGAAGAAAGAAAGAAAAACAAACGCAGATATTCATATTTTATACACACACAAAACCGGAAACAAACCCCGATCAACAAACCAACAAAATCCCCCTTTCCCTGGAGATGGTATTGTAGAAGAGGAGAACATAACAACCCCGCAATCAATCGCAATCATAAAACCAAAATACAGTCAAAGTACAGTGGGCGTGTGTGCTAGGAAGTCGGAAAAACACTAAAAGAAAGGAAAAAACCCTAAAAGAAAGGAAAAAAAACCCTAAAAGAAAGCAAAAAACACTAAAAGAAAGGAAAAACCACTAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTTGTTTTTTCTATGCCGTTTTCGTA]




>consensus_319#0
TGGTTTCCATTTCCAATCATGCACAAATGCACATAACACGATCATCATCCTTTTCACGAC
CAACAACCACCAACAGCAACCGGACGGGACGGACGCTGATAGCAAGCACTTAATAGAAGG
AAGAAACAAGAAGAAAGAAAGAAAAACAAACGCAGATATTCATATTTTATACACACACAA
AACCGGAAACAAACCCCGATCAACAAACCAACAAAATCCCCCTTTCCCTGGAGATGGTAT
TGTAGAAGAGGAGAACATAACAACCCCGCAATCAATCGCAATCATAAAACCAAAATACAG
TCAAAGTACAGTGGGCGTGTGTGCTAGGAAGTCGGAAAAACACTAAAAGAAAGGAAAAAA
CCCTAAAAGAAAGGAAAAAAAACCCTAAAAGAAAGCAAAAAACACTAAAAGAAAGGAAAA
ACCACTAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAA
CACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGT
CTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAAC
GGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTA
ACTTAGATATGTGTTGTTTTTTCTATGCCGTTTTCGTA

consensusID : consensus_319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [TAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTAATTTGTTTTGTGTGTGTGTGTGCGTCTGTGTGCGTGTGTGAATATTTTGTAAGTGTGCATTGATGATAGTAGCAATCGTCTGGCGCAAAGCATTGGTTTACATCTCCAATCATGCACAAATGCA]

[+] EMBL BX612972             [TAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTAATTTGTTTTGTGTGTGTGTGTGCGTCTGTGTGCGTGTGTGAATATTTTGTAAGTGTGCATTGATGATAGTAGCAATCGTCTGGCGCAAAGCATTGGTTTACATCTCCAATCATGCACAAATGCA]




>consensus_319#1
TAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACAC
TAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTG
GAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGG
ATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTA
GATATGTGTAATTTGTTTTGTGTGTGTGTGTGCGTCTGTGTGCGTGTGTGAATATTTTGT
AAGTGTGCATTGATGATAGTAGCAATCGTCTGGCGCAAAGCATTGGTTTACATCTCCAAT
CATGCACAAATGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_319#0      TGGTTTCCATTTCCAATCATGCACAAATGCACATAACACGATCATCATCCTTTTCACGAC 60
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CAACAACCACCAACAGCAACCGGACGGGACGGACGCTGATAGCAAGCACTTAATAGAAGG 120
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      AAGAAACAAGAAGAAAGAAAGAAAAACAAACGCAGATATTCATATTTTATACACACACAA 180
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      AACCGGAAACAAACCCCGATCAACAAACCAACAAAATCCCCCTTTCCCTGGAGATGGTAT 240
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      TGTAGAAGAGGAGAACATAACAACCCCGCAATCAATCGCAATCATAAAACCAAAATACAG 300
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      TCAAAGTACAGTGGGCGTGTGTGCTAGGAAGTCGGAAAAACACTAAAAGAAAGGAAAAAA 360
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CCCTAAAAGAAAGGAAAAAAAACCCTAAAAGAAAGCAAAAAACACTAAAAGAAAGGAAAA 420
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      ACCACTAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAA 480
consensus_319#1      -----TAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAA 55
                          *******************************************************

consensus_319#0      CACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGT 540
consensus_319#1      CACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGT 115
                     ************************************************************

consensus_319#0      CTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAAC 600
consensus_319#1      CTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAAC 175
                     ************************************************************

consensus_319#0      GGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTA 660
consensus_319#1      GGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTA 235
                     ************************************************************

consensus_319#0      ACTTAGATATGTGTTGTTTTTTCTATGCCGTTTTCGTA---------------------- 698
consensus_319#1      ACTTAGATATGTGTAATTTGTTTTGTGT-GTGTGTGTGCGTCTGTGTGCGTGTGTGAATA 294
                     **************  *** ** * **  ** *  **                       

consensus_319#0      ------------------------------------------------------------
consensus_319#1      TTTTGTAAGTGTGCATTGATGATAGTAGCAATCGTCTGGCGCAAAGCATTGGTTTACATC 354
                                                                                 

consensus_319#0      --------------------
consensus_319#1      TCCAATCATGCACAAATGCA 374