cluster # 3199

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Anopheles gambiae
cluster # 3199 cluster # 3199 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3199#0 length = 1234 sequences # 2

consensus_3199#1 length = 639 sequences # 1

consensusID : consensus_3199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1234
fasta sequence

                              [AGTAGGTTCGCTTTAGTTCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTGGCAGCATAAGGTGGTGCAGTTTTGTAATGTGCTAGTTATAAATTTACAGTGTGTGTGTCTGTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAGTGTTTCTACCGCAAAGCATTGCATTCGTGATTAATTAAGCTAAACGCTATATATACATCGATAAAAATTGCTCCATCGTCCCTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAGCCAACAAAAGTTGGAGAAAACATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACATCTCTCTGTCGCGCTTAACGGAAACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTCAGCATGGAAGTGCAGACCGCTCTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATATCGGGCGCTTTGCTACTGTATCTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACCGGAACGCAGAAGGGCTCGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATCTGCACATTCTTCGCCAGCAAAGGACACCGGGTGTTCGCGGGCATGAAGGACCCGGTGGAGTCGTTACCCGCGAAATTGCTGCGCGGTTGGATGAAGATGCGTGAAAACTCCGACACGCCAGTCAGCGGTTCGGTCGTGCCGATGAAGATCGACGTTACGCGGGAAGACGTGCTGCGTGAGGCGGCCGAATCTATGGGCGCTCATCTGAATGCTGGCGAGCGGGGCATACTGGCCGTGATCAACACGGCTGGATCGGTGTACCGTGGGCGCATTGACTCGCAGGACTCGCTGCAGTGGGAGAACATGTTCAAGAACAACGTGATGGGGTGTCTGAGGACGGCGCGCGCTTTCATCGGACTGTTGCGACCGACACGGGGCCGCCTGATTCTGCTCGGCTCCGGTAACGATGATGATGGGCTGACCGTGTTTATGGCCACACGGAATGCGGTGCAGGGATGTGCCGATGCTCTGCGCAAGGAGCTGAGACCGTACGGCGTTAATGTTGTGACACTGGACTCGCGGGGTGTTCCGGCTGAGTCGCTGTTTAAGGCACCGGTTCCATACACCATCTCCGACGAGGAAGGTGTCCCAACGCAGTACAGTGCGGACGTGCTGACCAGCTCGGCTTTGGGCGTAATTGAGCGGGCTCTGTATG]

[+] EMBL BX606194             [AGTAGGTTCGCTTTAGTTCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTGGCAGCATAAGGTGGTGCAGTTTTGTAATGTGCTAGTTATAAATTTACAGTGTGTGTGTCTGTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAGTGTTTCTACCGCAAAGCATTGCATTCGTGATTAATTAAGCTAAACGCTATATATACATCGATAAAAATTGCTCCATCGTCCCTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAGCCAACAAAAGTTGGAGAAAACATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACATCTCTCTGTCGCGCTTAACGGAAACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTCAGCATGGAAGTGCAGACCGCTCTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATATCGGGCGCTTTGCTACTGTATCTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACCGGAACGCAGAAGGGCTCGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATCTGCACATTCTTCGCCAGCAAAGGACACCGGGTGTTCGCGGGCATGAAGGACCCGGTGGAGTCGTTACCCGCGAAATTGCTGCGCGGTTGGATGAAGATGCGTGAAAACTCCGACACGCCAGTCAGCGGTTCGGTCGTGCCGATGAAGATCGACGTTACGCGGGAAGACGTGCTGCGTGAGGCGGCCGAATCTATGGGCGCTCATCTGAATGCTGGCGAGCGGGGCATACTGGCCGTGATCAACACGGCTGGATCGGTGTACCGTGGGCGCATTGACTCGCAGGACTCGCTGCAGTGGGAGAACATGTTCAAGAACA                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX613031             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATCTGCACATTCTTCGCCAGCAAAGGACACCGGGTGTTCTCGGGCATGAAGGACCCGGTGGAGTCGTTACCCGCGAAATTGCTGCGCGGTTGGATGAAGATGCGTGAAAACTCCGACACGCCAGTCAGCGGTTCGGTCGTGCCGATGAAGATCGACGTTACGCGGGAAGACGTGCTGCGTGAGGCGGCCGAATCTATGGGCGCTCATCTGAATGCTGGCGAGCGGGGCATACTGGCCGTGATCAACACGGCTGGATCGGTGTACCGTGGGCGCATTGACTCGCAGGACTCGCTGCAGTGGGAGAACATGTTCAAGAACAACGTGATGGGGTGTCTGAGGACGGCGCGCGCTTTCATCGGACTGTTGCGACCGACACGGGGCCGCCTGATTCTGCTCGGCTCCGGTAACGATGATGATGGGCTGACCGTGTTTATGGCCACACGGAATGCGGTGCAGGGATGTGCCGATGCTCTGCGCAAGGAGCTGAGACCGTACGGCGTTAATGTTGTGACACTGGACTCGCGGGGTGTTCCGGCTGAGTCGCTGTTTAAGGCACCGGTTCCATACACCATCTCCGACGAGGAAGGTGTCCCAACGCAGTACAGTGCGGACGTGCTGACCAGCTCGGCTTTGGGCGTAATTGAGCGGGCTCTGTATG]




>consensus_3199#0
AGTAGGTTCGCTTTAGTTCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTG
GCAGCATAAGGTGGTGCAGTTTTGTAATGTGCTAGTTATAAATTTACAGTGTGTGTGTCT
GTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAGTGTTTCTACCGCAAAGCATTG
CATTCGTGATTAATTAAGCTAAACGCTATATATACATCGATAAAAATTGCTCCATCGTCC
CTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAGCCAACAAAAGTTGGAGAAAAC
ATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACATCTCTCTGTCGCGCTTAACGGA
AACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTCAGCATGGAAGTGCAGACCGCT
CTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATATCGGGCGCTTTGCTACTGTAT
CTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACCGGAACGCAGAAGGGCTCGATA
CTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATCTGCACATTCTTCGCCAGCAAA
GGACACCGGGTGTTCGCGGGCATGAAGGACCCGGTGGAGTCGTTACCCGCGAAATTGCTG
CGCGGTTGGATGAAGATGCGTGAAAACTCCGACACGCCAGTCAGCGGTTCGGTCGTGCCG
ATGAAGATCGACGTTACGCGGGAAGACGTGCTGCGTGAGGCGGCCGAATCTATGGGCGCT
CATCTGAATGCTGGCGAGCGGGGCATACTGGCCGTGATCAACACGGCTGGATCGGTGTAC
CGTGGGCGCATTGACTCGCAGGACTCGCTGCAGTGGGAGAACATGTTCAAGAACAACGTG
ATGGGGTGTCTGAGGACGGCGCGCGCTTTCATCGGACTGTTGCGACCGACACGGGGCCGC
CTGATTCTGCTCGGCTCCGGTAACGATGATGATGGGCTGACCGTGTTTATGGCCACACGG
AATGCGGTGCAGGGATGTGCCGATGCTCTGCGCAAGGAGCTGAGACCGTACGGCGTTAAT
GTTGTGACACTGGACTCGCGGGGTGTTCCGGCTGAGTCGCTGTTTAAGGCACCGGTTCCA
TACACCATCTCCGACGAGGAAGGTGTCCCAACGCAGTACAGTGCGGACGTGCTGACCAGC
TCGGCTTTGGGCGTAATTGAGCGGGCTCTGTATG

consensusID : consensus_3199#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence

                              [CCGCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTGGCAGCATAAGGTGGTGCAGTTTGTGCGTATGTGTGGCGCTGTGTGTAATGTGCTAGTTATAAATTTACAGTGTGTGTGTCTGTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAGTGTTTCTACCGCAAAGCATTGCATTCGTGATTAATTAAGCTAAACGCTATATATACATCGATAAAAATTGCTCCATCGTCCCTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAGCCAACAAAAGTTGGAGAAAACATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACATCTCTCTGTCGCGCTTAACGGAAACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTCAGCATGGAAGTGCAGACCGCTCTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATAGCGGGCGCTTTGCTACTGTATCTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACCGGAACGCAGAAGGGCTCGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATCTGCACATTCTTCGCCAGCAAAGGACACCGGGTGTTCGCGGGCATGAAGGACCCG]

[+] EMBL BM628746             [CCGCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTGGCAGCATAAGGTGGTGCAGTTTGTGCGTATGTGTGGCGCTGTGTGTAATGTGCTAGTTATAAATTTACAGTGTGTGTGTCTGTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAGTGTTTCTACCGCAAAGCATTGCATTCGTGATTAATTAAGCTAAACGCTATATATACATCGATAAAAATTGCTCCATCGTCCCTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAGCCAACAAAAGTTGGAGAAAACATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACATCTCTCTGTCGCGCTTAACGGAAACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTCAGCATGGAAGTGCAGACCGCTCTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATAGCGGGCGCTTTGCTACTGTATCTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACCGGAACGCAGAAGGGCTCGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATCTGCACATTCTTCGCCAGCAAAGGACACCGGGTGTTCGCGGGCATGAAGGACCCG]




>consensus_3199#1
CCGCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTGGCAGCATAAGGTGGT
GCAGTTTGTGCGTATGTGTGGCGCTGTGTGTAATGTGCTAGTTATAAATTTACAGTGTGT
GTGTCTGTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAGTGTTTCTACCGCAAA
GCATTGCATTCGTGATTAATTAAGCTAAACGCTATATATACATCGATAAAAATTGCTCCA
TCGTCCCTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAGCCAACAAAAGTTGGA
GAAAACATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACATCTCTCTGTCGCGCTT
AACGGAAACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTCAGCATGGAAGTGCAG
ACCGCTCTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATAGCGGGCGCTTTGCTA
CTGTATCTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACCGGAACGCAGAAGGGC
TCGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATCTGCACATTCTTCGCC
AGCAAAGGACACCGGGTGTTCGCGGGCATGAAGGACCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3199#0      AGTAGGTTCGCTTTAGTTCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTG 60
consensus_3199#1      ---------------CCGCGCTCGGCCAGTTCGGCCAACCCTTTCCGCGGAAAGAAACTG 45
                                        ******************************************

consensus_3199#0      GCAGCATAAGGTGGTGCAGTTT---------------------TGTAATGTGCTAGTTAT 99
consensus_3199#1      GCAGCATAAGGTGGTGCAGTTTGTGCGTATGTGTGGCGCTGTGTGTAATGTGCTAGTTAT 105
                      **********************                     *****************

consensus_3199#0      AAATTTACAGTGTGTGTGTCTGTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAG 159
consensus_3199#1      AAATTTACAGTGTGTGTGTCTGTTTCTGTGTATAAGCTGTAACAAAACAGCATACGAAAG 165
                      ************************************************************

consensus_3199#0      TGTTTCTACCGCAAAGCATTGCATTCGTGATTAATTAAGCTAAACGCTATATATACATCG 219
consensus_3199#1      TGTTTCTACCGCAAAGCATTGCATTCGTGATTAATTAAGCTAAACGCTATATATACATCG 225
                      ************************************************************

consensus_3199#0      ATAAAAATTGCTCCATCGTCCCTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAG 279
consensus_3199#1      ATAAAAATTGCTCCATCGTCCCTGTCGATAGTCATCAACCATCGTTGCAGCTGCGCAAAG 285
                      ************************************************************

consensus_3199#0      CCAACAAAAGTTGGAGAAAACATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACAT 339
consensus_3199#1      CCAACAAAAGTTGGAGAAAACATCCGACGCTGCTCTTTGAAGAGATTTTCACGCCAACAT 345
                      ************************************************************

consensus_3199#0      CTCTCTGTCGCGCTTAACGGAAACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTC 399
consensus_3199#1      CTCTCTGTCGCGCTTAACGGAAACGGAAACCCATCGGAATAGCCGTGGTGTGTGTAGCTC 405
                      ************************************************************

consensus_3199#0      AGCATGGAAGTGCAGACCGCTCTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATA 459
consensus_3199#1      AGCATGGAAGTGCAGACCGCTCTGGTGCTGACGATTCAGCTGATAGCGCTGTTCTCGATA 465
                      ************************************************************

consensus_3199#0      TCGGGCGCTTTGCTACTGTATCTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACC 519
consensus_3199#1      GCGGGCGCTTTGCTACTGTATCTGCTGTGCAAGGTGCGAGGAACACGGGACGATGCTACC 525
                       ***********************************************************

consensus_3199#0      GGAACGCAGAAGGGCTCGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATC 579
consensus_3199#1      GGAACGCAGAAGGGCTCGATACTGATCACCTGTGCGGACACCGCGCTGGGACTGCAGATC 585
                      ************************************************************

consensus_3199#0      TGCACATTCTTCGCCAGCAAAGGACACCGGGTGTTCGCGGGCATGAAGGACCCGGTGGAG 639
consensus_3199#1      TGCACATTCTTCGCCAGCAAAGGACACCGGGTGTTCGCGGGCATGAAGGACCCG------ 639
                      ******************************************************      

consensus_3199#0      TCGTTACCCGCGAAATTGCTGCGCGGTTGGATGAAGATGCGTGAAAACTCCGACACGCCA 699
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      GTCAGCGGTTCGGTCGTGCCGATGAAGATCGACGTTACGCGGGAAGACGTGCTGCGTGAG 759
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      GCGGCCGAATCTATGGGCGCTCATCTGAATGCTGGCGAGCGGGGCATACTGGCCGTGATC 819
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      AACACGGCTGGATCGGTGTACCGTGGGCGCATTGACTCGCAGGACTCGCTGCAGTGGGAG 879
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      AACATGTTCAAGAACAACGTGATGGGGTGTCTGAGGACGGCGCGCGCTTTCATCGGACTG 939
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      TTGCGACCGACACGGGGCCGCCTGATTCTGCTCGGCTCCGGTAACGATGATGATGGGCTG 999
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      ACCGTGTTTATGGCCACACGGAATGCGGTGCAGGGATGTGCCGATGCTCTGCGCAAGGAG 1059
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      CTGAGACCGTACGGCGTTAATGTTGTGACACTGGACTCGCGGGGTGTTCCGGCTGAGTCG 1119
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      CTGTTTAAGGCACCGGTTCCATACACCATCTCCGACGAGGAAGGTGTCCCAACGCAGTAC 1179
consensus_3199#1      ------------------------------------------------------------
                                                                                  

consensus_3199#0      AGTGCGGACGTGCTGACCAGCTCGGCTTTGGGCGTAATTGAGCGGGCTCTGTATG 1234
consensus_3199#1      -------------------------------------------------------