cluster # 3200

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Anopheles gambiae
cluster # 3200 cluster # 3200 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3200#0 length = 620 sequences # 2

consensus_3200#1 length = 361 sequences # 1

consensusID : consensus_3200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 620
fasta sequence

                              [TGACCAGGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATTCGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTGTGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTTTATCAAACTTCAGCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTTCGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCCCAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACCCCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGACAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCTAAACCACTGTGCGAACAAATT]

[+] EMBL BX629291             [TGACCAGGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATTCGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTGTGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTTTATCAAACTTCAGCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTTCGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCCCAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACCCCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGACAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCTAAACCACTGTGCGAACAAATT]
[+] EMBL BX629184             [      GGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATTCGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTGTGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTTTATCAAACTTCAGCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTTCGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCCCAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACCCCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGACAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCTAAACCACTG            ]




>consensus_3200#0
TGACCAGGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTC
TCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGG
GAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATT
CGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTG
TGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTT
TATCAAACTTCAGCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTTC
GGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCCC
AACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACCC
CTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGAC
AAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCTA
AACCACTGTGCGAACAAATT

consensusID : consensus_3200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [CCGCCCACGCGTCCGCGGACGCGTGGGCGCAGTATGGGCGGTGGCAATGTCGGCGGTGGCGGCGGCGGCAGCGGCGGTGGTAACCGGGGCAGCGGCGGTGGCAGCTACGGCCAGCGCTCCGACCGGGGCAACAACGTCGGCAACGGGCAGCGATCGGTTGGCAACGGCAATGCCATCAGCAACCGGGGCTTCGGCTCGGGCTACTAAAACCGGACCGCCGGTCTGACCAGGGGGTGGGGGGGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGGATCACCAAGCGCCACCCT]

[+] EMBL BM590444             [CCGCCCACGCGTCCGCGGACGCGTGGGCGCAGTATGGGCGGTGGCAATGTCGGCGGTGGCGGCGGCGGCAGCGGCGGTGGTAACCGGGGCAGCGGCGGTGGCAGCTACGGCCAGCGCTCCGACCGGGGCAACAACGTCGGCAACGGGCAGCGATCGGTTGGCAACGGCAATGCCATCAGCAACCGGGGCTTCGGCTCGGGCTACTAAAACCGGACCGCCGGTCTGACCAGGGGGTGGGGGGGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGGATCACCAAGCGCCACCCT]




>consensus_3200#1
CCGCCCACGCGTCCGCGGACGCGTGGGCGCAGTATGGGCGGTGGCAATGTCGGCGGTGGC
GGCGGCGGCAGCGGCGGTGGTAACCGGGGCAGCGGCGGTGGCAGCTACGGCCAGCGCTCC
GACCGGGGCAACAACGTCGGCAACGGGCAGCGATCGGTTGGCAACGGCAATGCCATCAGC
AACCGGGGCTTCGGCTCGGGCTACTAAAACCGGACCGCCGGTCTGACCAGGGGGTGGGGG
GGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTC
TTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGGATCACCAAGCGCCACCC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3200#0      TGACCAGGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTC 60
consensus_3200#1      ------------------------------------------------------------
                                                                                  

consensus_3200#0      TCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGG 120
consensus_3200#1      ------------------------------------------------------------
                                                                                  

consensus_3200#0      GAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATT 180
consensus_3200#1      --------CCGCCCA-CGC-GTCCGCGGACGCGTGGGCGCAGTATGGGCGGTGGCAATGT 50
                               * ** * ***   **     ** ***   ** *   *** **  *  *  *

consensus_3200#0      CGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTG 240
consensus_3200#1      CGGCG--GTGGCGGCGGCGGCAGCGGCGGTGGTAACCGGGGCAGCGGCGGTG-------- 100
                      **  *  *** **    * *  *   ** * *   *  **  **  *   **        

consensus_3200#0      TGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTT 300
consensus_3200#1      -GCAGCTACGGCCAGCGCTCCGACCGGGGCAACAACGTCG-GCAACGGGCAGCGATCGGT 158
                       **    **   *  * *  * ***  *     * ** **   * ** ***   *  * *

consensus_3200#0      TATCAAACTTCA-GCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTT 359
consensus_3200#1      TGGCAACGGCAATGCCATCAGCAACCGGGGCTTCGGCTCGGGCTACTAAAACCGGACCGC 218
                      *  ***     * **    * **    *  ** *  *  **   *  * *    **    

consensus_3200#0      CGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCC 419
consensus_3200#1      CGGTCTGACCAGGGGGTGGGGGGGGTGGATGTTTGG---TGGCAGCCGGCTCGTAG-ATC 274
                      ****     *  *     ** *   *   * *****   **  *  * **    *    *

consensus_3200#0      CAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACC 479
consensus_3200#1      TCTCGCTCTCTCTCCCCCTC--TCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAA 332
                         * * * *      * **     *******       * ****          *    

consensus_3200#0      CCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGA 539
consensus_3200#1      CAGGGAGTTGGATCACCAAGCGCCACCCT------------------------------- 361
                      *   *  ** ** ***** * **    **                               

consensus_3200#0      CAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCT 599
consensus_3200#1      ------------------------------------------------------------
                                                                                  

consensus_3200#0      AAACCACTGTGCGAACAAATT 620
consensus_3200#1      ---------------------