cluster # 3201

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3201 cluster # 3201 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3201#0 length = 732 sequences # 2

consensus_3201#1 length = 159 sequences # 1

consensusID : consensus_3201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 732
fasta sequence

                              [CCGCGGACGCGTGGGGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTTCCAGCTGGCTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATCTTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGGCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGA-GAAGTACGCCCCGGACATGAGCAACAAGTCGGTCACCAAGACCGTCAAGTTTTTCTTGCCCAAGAAATGTGTGCACGTCTACTAAAAACCACAAATCAAACTGAAACCCCGAGCCAAATGAACCGTTTGTGAAAGAATCGAAATCAAGCA]

[+] EMBL BM585871             [CCGCGGACGCGTGGGGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTTCCAGCTGGCTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATCTTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGGCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGA GAAGTACGC                                                                                                                                             ]
[+] EMBL BM589545             [                                                                                                                                                                  ccggTTCTCCGTCCACCCCGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATCTTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGCCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCGCAAGGGAGT CAACCCGGACATGAGCAACAAGTCGGTCACCAAGACCGTCAAGTTTTTCTTGCCCAAGAAATGTGTGCACGTCTACTAAAAACCACAAATCAAACTGAAACCCCGAGCCAAATGAACCGTTTGTGAAAGAATCGAAATCAAGCA]




>consensus_3201#0
CCGCGGACGCGTGGGGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTT
CCAGCTGGCTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTT
CGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCC
CGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATC
TTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCT
TGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGGCCA
GGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGA
TGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTAT
CCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCT
CCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCCCGGACAT
GAGCAACAAGTCGGTCACCAAGACCGTCAAGTTTTTCTTGCCCAAGAAATGTGTGCACGT
CTACTAAAAACCACAAATCAAACTGAAACCCCGAGCCAAATGAACCGTTTGTGAAAGAAT
CGAAATCAAGCA

consensusID : consensus_3201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [CCCCCGGGGGGGGGGCATAAAAAATTTTATTGCTTCCCCAAATTAAAATACTAAAACTTTTGTCAAGGGGTCGGTCTTGTCAACGGTCGGAAAGGTCTCTTGTCCCAAACCCTACAACAAAACCTTAGGTTTTCTCCTCCAAGGCCTGGGTGGCCCCCA]

[+] EMBL BX611788             [CCCCCGGGGGGGGGGCATAAAAAATTTTATTGCTTCCCCAAATTAAAATACTAAAACTTTTGTCAAGGGGTCGGTCTTGTCAACGGTCGGAAAGGTCTCTTGTCCCAAACCCTACAACAAAACCTTAGGTTTTCTCCTCCAAGGCCTGGGTGGCCCCCA]




>consensus_3201#1
CCCCCGGGGGGGGGGCATAAAAAATTTTATTGCTTCCCCAAATTAAAATACTAAAACTTT
TGTCAAGGGGTCGGTCTTGTCAACGGTCGGAAAGGTCTCTTGTCCCAAACCCTACAACAA
AACCTTAGGTTTTCTCCTCCAAGGCCTGGGTGGCCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3201#0      CCGCGGACGCGTGGGGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTT 60
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      CCAGCTGGCTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTT 120
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      CGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCC 180
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      CGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATC 240
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      TTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCT 300
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      TGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGGCCA 360
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      GGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGA 420
consensus_3201#1      -----------------------------------------------CCCCCGGGGGGGG 13
                                                                      *  *** * ** 

consensus_3201#0      TGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTAT 480
consensus_3201#1      GGCATAAAAAATTTTATTGCTTCCCCAAATTAAAATACTAAAACTTTTGTCAAGGGGTCG 73
                       *   * *  *   *  **   *  **     *        * ** ** *  * ** *  

consensus_3201#0      CCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCT 540
consensus_3201#1      GTCTTGTCA--ACGGTCGGAAAGGTCTCTTGTCCCAAACCCTACAACAAAACCTTAGGTT 131
                         * * **  **   * *** *    *     * * * * * *  **    *    * *

consensus_3201#0      CCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCCCGGACAT 600
consensus_3201#1      TTC--TCCTCCAAGGCCTGGGTGGCCCCCA------------------------------ 159
                        *  *  ** *   *   **    *****                              

consensus_3201#0      GAGCAACAAGTCGGTCACCAAGACCGTCAAGTTTTTCTTGCCCAAGAAATGTGTGCACGT 660
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      CTACTAAAAACCACAAATCAAACTGAAACCCCGAGCCAAATGAACCGTTTGTGAAAGAAT 720
consensus_3201#1      ------------------------------------------------------------
                                                                                  

consensus_3201#0      CGAAATCAAGCA 732
consensus_3201#1      ------------