cluster # 3204

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Anopheles gambiae
cluster # 3204 cluster # 3204 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3204#0 length = 766 sequences # 2

consensus_3204#1 length = 611 sequences # 1

consensusID : consensus_3204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 766
fasta sequence

                              [CCGCGGACGCGTGGGTGCACAGCGGATTTGGCGGCTTGCATCCGTATCAGCCTAACGTCTCTAACGGTCTCTTTCTCCTTCGCCTTTCAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGGTTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATTCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGTTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGACGAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCGCCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGAGACATTTAATGCTGGGGGAAATTCCTTGGCTCCGTCTGCATGCAAGTTGCTCTCGAAAGAAGAAGAAACAAAAAGTCGAACAAAAAGATGTCTTTCATCTGCTGCCAGCGACGAAG]

[+] EMBL BM648325             [CCGCGGACGCGTGGGTGCACAGCGGATTTGGCGGCTTGCATCCGTATCAGCCTAACGTCTCTAACGGTCTCTTTCTCCTTCGCCTTTCAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGGTTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATTCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGTTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGACGAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCGCCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGAGACATTTAATGCTGGGGGAAATTC                                                                                            ]
[+] EMBL BX624985             [                                                                                                           gTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGGTTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGCTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGACGAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCGCCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGAGACATTTAATGCT GGGGAAATTCCTTGGCTCCGTCTGCATGCAAGTTGCTCTCGAAAGAAGAAGAAACAAAAAGTCGAACAAAAAGATGTCTTTCATCTGCTGCCAGCGACGAAG]




>consensus_3204#0
CCGCGGACGCGTGGGTGCACAGCGGATTTGGCGGCTTGCATCCGTATCAGCCTAACGTCT
CTAACGGTCTCTTTCTCCTTCGCCTTTCAGTTATGACGGATAATGCCTTCAAAGCGAAGG
ACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTA
AAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGGTTGGTAAAGG
TGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGA
TCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGG
ACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATTCTGTCCTTCTACGAGGTGG
ACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGC
GTTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGACGAGGTGTTTG
ACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCGCCGTACCGGG
AAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGAGACATTTAAT
GCTGGGGGAAATTCCTTGGCTCCGTCTGCATGCAAGTTGCTCTCGAAAGAAGAAGAAACA
AAAAGTCGAACAAAAAGATGTCTTTCATCTGCTGCCAGCGACGAAG

consensusID : consensus_3204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGTTCATCATTTATTTTGATTTTGCATTGAAAACATTAGCGTGCAGATTCAATTATTGTTTGTGTTATTCATCGGTACTATCAAAACAAAGATATAAAAAGTCATCCAAAAAGCTGAGCAAACTCACTCAATTACTAAGTCCAAAGCGGTATCGTCCAAACCATTTACCGTGCACAATGATCGATACAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGATACGACCGCGTCCCTTCTAGACAACGTTTACCGATTGGTAAAGGTGCATACCGGCAGTAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGCTCGTG]

[+] EMBL BM628307             [CCGCCCACGCGTCCGCCCACGCGTCCGTTCATCATTTATTTTGATTTTGCATTGAAAACATTAGCGTGCAGATTCAATTATTGTTTGTGTTATTCATCGGTACTATCAAAACAAAGATATAAAAAGTCATCCAAAAAGCTGAGCAAACTCACTCAATTACTAAGTCCAAAGCGGTATCGTCCAAACCATTTACCGTGCACAATGATCGATACAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGATACGACCGCGTCCCTTCTAGACAACGTTTACCGATTGGTAAAGGTGCATACCGGCAGTAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGCTCGTG]




>consensus_3204#1
CCGCCCACGCGTCCGCCCACGCGTCCGTTCATCATTTATTTTGATTTTGCATTGAAAACA
TTAGCGTGCAGATTCAATTATTGTTTGTGTTATTCATCGGTACTATCAAAACAAAGATAT
AAAAAGTCATCCAAAAAGCTGAGCAAACTCACTCAATTACTAAGTCCAAAGCGGTATCGT
CCAAACCATTTACCGTGCACAATGATCGATACAGTTATGACGGATAATGCCTTCAAAGCG
AAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTG
GCTAAAGTGTTCATCGACGATACGACCGCGTCCCTTCTAGACAACGTTTACCGATTGGTA
AAGGTGCATACCGGCAGTAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATC
GTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAG
GCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTCTACGAG
GTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTG
TTGCGCTCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3204#0      ------------------------------------------------------------
consensus_3204#1      CCGCCCACGCGTCCGCCCACGCGTCCGTTCATCATTTATTTTGATTTTGCATTGAAAACA 60
                                                                                  

consensus_3204#0      ------------------------------------------------------------
consensus_3204#1      TTAGCGTGCAGATTCAATTATTGTTTGTGTTATTCATCGGTACTATCAAAACAAAGATAT 120
                                                                                  

consensus_3204#0      ----------CCGCGGACGCGTGGGTGCACAGCGGATTTGGCGGCTTGCATCCGTATCAG 50
consensus_3204#1      AAAAAGTCATCCAAAAAGCTGAGCAAACTCACTCAATTACTAAGTCCAAAGCGGTATCGT 180
                                **    *   * *    * **    ***     *     * * *****  

consensus_3204#0      CCTAACGTCTCTAACGGTCTCTTTCTCCTTCGCCTTTCAGTTATGACGGATAATGCCTTC 110
consensus_3204#1      CCAAAC-CATTTACCGTGCACAATGATCGATAC-----AGTTATGACGGATAATGCCTTC 234
                      ** ***   * ** **  * *  *   *    *     **********************

consensus_3204#0      AAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAA 170
consensus_3204#1      AAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAA 294
                      ************************************************************

consensus_3204#0      AATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGG 230
consensus_3204#1      AATGTGGCTAAAGTGTTCATCGACGATACGACCGCGTCCCTTCTAGACAACGTTTACCGA 354
                      ************************* *************************** ***** 

consensus_3204#0      TTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATC 290
consensus_3204#1      TTGGTAAAGGTGCATACCGGCAGTAAAAAGGATGCGGAACGATTGGTTAAGAACATCATC 414
                      *********************** ************************************

consensus_3204#0      AAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTG 350
consensus_3204#1      AAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTG 474
                      ************************************************************

consensus_3204#0      CGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATTCTGTCCTTC 410
consensus_3204#1      CGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTC 534
                      ************************************************** *********

consensus_3204#0      TACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGC 470
consensus_3204#1      TACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGC 594
                      ************************************************************

consensus_3204#0      AGCCTGTTGCGTTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGAC 530
consensus_3204#1      AGCCTGTTGCGCTCGTG------------------------------------------- 611
                      *********** *****                                           

consensus_3204#0      GAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCG 590
consensus_3204#1      ------------------------------------------------------------
                                                                                  

consensus_3204#0      CCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGA 650
consensus_3204#1      ------------------------------------------------------------
                                                                                  

consensus_3204#0      GACATTTAATGCTGGGGGAAATTCCTTGGCTCCGTCTGCATGCAAGTTGCTCTCGAAAGA 710
consensus_3204#1      ------------------------------------------------------------
                                                                                  

consensus_3204#0      AGAAGAAACAAAAAGTCGAACAAAAAGATGTCTTTCATCTGCTGCCAGCGACGAAG 766
consensus_3204#1      --------------------------------------------------------