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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence
[CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTTGCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATGATCAAAAACAAATATTATTCTGTAGAA]
[+] EMBL BM580726 [CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTTGCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATGATCAAAAACAAATATTATTCTGTAGAA]
[+] EMBL BX612110 [ ATTATAGCATTAGAAAGGAAAGGGACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAAC ]
consensusID : consensus_3208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAACCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGACTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA]
[+] EMBL BM600441 [CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAACCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGACTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3208#0 ------------------------------------------------------------
consensus_3208#1 CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAA 60
consensus_3208#0 ------------------------------------------------------------
consensus_3208#1 CCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGA 120
consensus_3208#0 -----CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACC 55
consensus_3208#1 CTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACC 180
* * * ****************************************
consensus_3208#0 AGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAG 115
consensus_3208#1 AGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAG 240
************************************************************
consensus_3208#0 CAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACT 175
consensus_3208#1 CAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACT 300
************************************************************
consensus_3208#0 AGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAAT 235
consensus_3208#1 AGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAAT 360
************************************************************
consensus_3208#0 TTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAG 295
consensus_3208#1 TTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAG 420
************************************************************
consensus_3208#0 CAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGA 355
consensus_3208#1 CAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGA 480
************************************************************
consensus_3208#0 GAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAG 415
consensus_3208#1 GAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAG 540
************************************************************
consensus_3208#0 AAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAAT 475
consensus_3208#1 AAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA- 599
***********************************************************
consensus_3208#0 CGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTT 535
consensus_3208#1 ------------------------------------------------------------
consensus_3208#0 GCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATG 595
consensus_3208#1 ------------------------------------------------------------
consensus_3208#0 ATCAAAAACAAATATTATTCTGTAGAA 622
consensus_3208#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||