cluster # 3217

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Anopheles gambiae
cluster # 3217 cluster # 3217 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3217#0 length = 834 sequences # 1

consensus_3217#1 length = 337 sequences # 1
consensus_3217#2 length = 306 sequences # 1

consensusID : consensus_3217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 834
fasta sequence

                              [GTAGTGATGTAGAGAAGACAAAAAACACATTAGGTTGGTGGACACTGAGCAATTGGGCATAAAGCCGTGTTGTTCCGTAGAAGTATAATTTTTTACACAAGGGATTACAGATAAATGGACAATTGACTCGAGGATTTTAGAACACGCACAAATAATAGAAATGCCTCTGTAGTTTGATGCTAGTGTGCGGTCACCTTTCTTATAAATGGGAACAAGCCAAGCTAGTTTCCATTGACTAGGAAAAATCCCTACACTAAGCGAGCGAGAAAAAAGACGAGTGAGAATAGGAGTGAGGGTATTGCCACATTTTTTCAAAACACAGGCAGGGATGCCATCAGGGCCTGGTGAAAACGAAGTTTTAAGTTTGGATAAAGCGGATTTTACTAGGCTTATATATACAACCGTTAGAATATTTAGAACTTGAAAGCAATCGATAACTAATGTTTAAACACGAAAAAAACCCTACATTTCTCTCGGCCTGTCAAAAGATTGCAAGCAAATATTTTTGTTGTTCATCCAGCGATGGACAGTTTGGATAGCTTGAAAAAGAATCGCCACAGGCTGCTAGACTTCCCTTACCTCAGTGAAAAAGTGTGTTTGACATATATTTTCTAGCAGAATATGCCGTGTCTGAACGCGGCTAATGAATTTAACTAAAAAGTTTTGTAATTGGTAGATAGGTAAATTGGGCATGCTTTTTTGCATCCAACAACGATGACAGAGTAACTTAAATTTGCGATCTGACACGACCATTTCATCGATGACNAAATAGTAACTTCCATCAGCTGTCACCAGAGTGAAAATCGAATTACGCTACCAATTACGATCAATGTA]

[+] EMBL BX622242             [GTAGTGATGTAGAGAAGACAAAAAACACATTAGGTTGGTGGACACTGAGCAATTGGGCATAAAGCCGTGTTGTTCCGTAGAAGTATAATTTTTTACACAAGGGATTACAGATAAATGGACAATTGACTCGAGGATTTTAGAACACGCACAAATAATAGAAATGCCTCTGTAGTTTGATGCTAGTGTGCGGTCACCTTTCTTATAAATGGGAACAAGCCAAGCTAGTTTCCATTGACTAGGAAAAATCCCTACACTAAGCGAGCGAGAAAAAAGACGAGTGAGAATAGGAGTGAGGGTATTGCCACATTTTTTCAAAACACAGGCAGGGATGCCATCAGGGCCTGGTGAAAACGAAGTTTTAAGTTTGGATAAAGCGGATTTTACTAGGCTTATATATACAACCGTTAGAATATTTAGAACTTGAAAGCAATCGATAACTAATGTTTAAACACGAAAAAAACCCTACATTTCTCTCGGCCTGTCAAAAGATTGCAAGCAAATATTTTTGTTGTTCATCCAGCGATGGACAGTTTGGATAGCTTGAAAAAGAATCGCCACAGGCTGCTAGACTTCCCTTACCTCAGTGAAAAAGTGTGTTTGACATATATTTTCTAGCAGAATATGCCGTGTCTGAACGCGGCTAATGAATTTAACTAAAAAGTTTTGTAATTGGTAGATAGGTAAATTGGGCATGCTTTTTTGCATCCAACAACGATGACAGAGTAACTTAAATTTGCGATCTGACACGACCATTTCATCGATGACNAAATAGTAACTTCCATCAGCTGTCACCAGAGTGAAAATCGAATTACGCTACCAATTACGATCAATGTA]




>consensus_3217#0
GTAGTGATGTAGAGAAGACAAAAAACACATTAGGTTGGTGGACACTGAGCAATTGGGCAT
AAAGCCGTGTTGTTCCGTAGAAGTATAATTTTTTACACAAGGGATTACAGATAAATGGAC
AATTGACTCGAGGATTTTAGAACACGCACAAATAATAGAAATGCCTCTGTAGTTTGATGC
TAGTGTGCGGTCACCTTTCTTATAAATGGGAACAAGCCAAGCTAGTTTCCATTGACTAGG
AAAAATCCCTACACTAAGCGAGCGAGAAAAAAGACGAGTGAGAATAGGAGTGAGGGTATT
GCCACATTTTTTCAAAACACAGGCAGGGATGCCATCAGGGCCTGGTGAAAACGAAGTTTT
AAGTTTGGATAAAGCGGATTTTACTAGGCTTATATATACAACCGTTAGAATATTTAGAAC
TTGAAAGCAATCGATAACTAATGTTTAAACACGAAAAAAACCCTACATTTCTCTCGGCCT
GTCAAAAGATTGCAAGCAAATATTTTTGTTGTTCATCCAGCGATGGACAGTTTGGATAGC
TTGAAAAAGAATCGCCACAGGCTGCTAGACTTCCCTTACCTCAGTGAAAAAGTGTGTTTG
ACATATATTTTCTAGCAGAATATGCCGTGTCTGAACGCGGCTAATGAATTTAACTAAAAA
GTTTTGTAATTGGTAGATAGGTAAATTGGGCATGCTTTTTTGCATCCAACAACGATGACA
GAGTAACTTAAATTTGCGATCTGACACGACCATTTCATCGATGACNAAATAGTAACTTCC
ATCAGCTGTCACCAGAGTGAAAATCGAATTACGCTACCAATTACGATCAATGTA

consensusID : consensus_3217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [AGCAGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACATGGATGACAACCGCCAGGAGCAGACGTACGATGGACCCGCCGGCATGAACCCAGACGGCATCATCGAGTCGAACTATAGCGAGTCTTATGACAACTTCGACCAGATGGGTCTGCGTGAGGAGCTCCTCCGCGGCATTTACGCATACGGTTTCGAGAAACCGTCTGCCATCCAGCAGCGCGCCATTGTGCCGTGCGTGAAAGGAAGCGATGTAATCCACTTCATGCGCAACCCGGTCAAGATTCTGGTGAAGAAGGAGGAGCTGACCCTGGAAGGTATCCGGCAGTTCTACGTCGACGT]

[+] EMBL CNS08EO4             [AGCAGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACATGGATGACAACCGCCAGGAGCAGACGTACGATGGACCCGCCGGCATGAACCCAGACGGCATCATCGAGTCGAACTATAGCGAGTCTTATGACAACTTCGACCAGATGGGTCTGCGTGAGGAGCTCCTCCGCGGCATTTACGCATACGGTTTCGAGAAACCGTCTGCCATCCAGCAGCGCGCCATTGTGCCGTGCGTGAAAGGAAGCGATGTAATCCACTTCATGCGCAACCCGGTCAAGATTCTGGTGAAGAAGGAGGAGCTGACCCTGGAAGGTATCCGGCAGTTCTACGTCGACGT]




>consensus_3217#1
AGCAGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACATGGATGACAACCGCCAGGAGC
AGACGTACGATGGACCCGCCGGCATGAACCCAGACGGCATCATCGAGTCGAACTATAGCG
AGTCTTATGACAACTTCGACCAGATGGGTCTGCGTGAGGAGCTCCTCCGCGGCATTTACG
CATACGGTTTCGAGAAACCGTCTGCCATCCAGCAGCGCGCCATTGTGCCGTGCGTGAAAG
GAAGCGATGTAATCCACTTCATGCGCAACCCGGTCAAGATTCTGGTGAAGAAGGAGGAGC
TGACCCTGGAAGGTATCCGGCAGTTCTACGTCGACGT

consensusID : consensus_3217#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGTTTGCAGTGTACAGTGCGTGTGTGTTTTAATTGTTTGTTTCCTGTTTGCTGTCTTTTTAATTGTTACAGCCGTGTACAAGTTGTGTTTTTAACTACGAACGACCATCGAGAAAAGTTAATTAGCTTTTTCCTGCAGTGGAAAACCCCGCAAAGCCCGTGATTCATTGTAGAAGAGAAAAAAGAACCAATCTTTTGATATTAGCGTCTGGTTTGTGCGACGTCATTTTGTGCTTTCTGCCATTTGCAATCGATCAGCCATGAAGTTTCTAATACTCAT]

[+] EMBL BM604692             [CCGCCCACGCGTCCGCCCACGCGTCCGGGTTTGCAGTGTACAGTGCGTGTGTGTTTTAATTGTTTGTTTCCTGTTTGCTGTCTTTTTAATTGTTACAGCCGTGTACAAGTTGTGTTTTTAACTACGAACGACCATCGAGAAAAGTTAATTAGCTTTTTCCTGCAGTGGAAAACCCCGCAAAGCCCGTGATTCATTGTAGAAGAGAAAAAAGAACCAATCTTTTGATATTAGCGTCTGGTTTGTGCGACGTCATTTTGTGCTTTCTGCCATTTGCAATCGATCAGCCATGAAGTTTCTAATACTCAT]




>consensus_3217#2
CCGCCCACGCGTCCGCCCACGCGTCCGGGTTTGCAGTGTACAGTGCGTGTGTGTTTTAAT
TGTTTGTTTCCTGTTTGCTGTCTTTTTAATTGTTACAGCCGTGTACAAGTTGTGTTTTTA
ACTACGAACGACCATCGAGAAAAGTTAATTAGCTTTTTCCTGCAGTGGAAAACCCCGCAA
AGCCCGTGATTCATTGTAGAAGAGAAAAAAGAACCAATCTTTTGATATTAGCGTCTGGTT
TGTGCGACGTCATTTTGTGCTTTCTGCCATTTGCAATCGATCAGCCATGAAGTTTCTAAT
ACTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3217#0      GTAGTGATGTAGAGAAGACAAAAAACACATTAGGTTGGTGGACACTGAGCAATTGGGCAT 60
consensus_3217#2      ------------------------------------------------------------
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      AAAGCCGTGTTGTTCCGTAGAAGTATAATTTTTTACACAAGGGATTACAGATAAATGGAC 120
consensus_3217#2      ------------------------------------------------------------
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      AATTGACTCGAGGATTTTAGAACACGCACAAATAATAGAAATGCCTCTGTAGTTTGATGC 180
consensus_3217#2      ------------------------------------------------------------
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      TAGTGTGCGGTCACCTTTCTTATAAATGGGAACAAGCCAAGCTAGTTTCCATTGACTAGG 240
consensus_3217#2      ------------------------------------------------------------
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      AAAAATCCCTACACTAAGCGAGCGAGAAAAAAGACGAGTGAGAATAGGAGTGAGGGTATT 300
consensus_3217#2      ------------------------------------------------------------
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      GCCACATTTTTTCAAAACACAGGCAGGGATGCCATCAGGGCCTGGTGAAAACGAAGTTTT 360
consensus_3217#2      ------------------------------------------------------------
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      AAGTTTGGATAAAGCGGATTTTACTAGGCTTATATATACAACCGTTAGAATATTTAGAAC 420
consensus_3217#2      ----------------------------------------------------------CC 2
consensus_3217#1      ---------------------AGCAGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACA 39
                                                                                  

consensus_3217#0      TTGAAAGCAATCGATAACTAATGTTTAAACACGAAAAAAACCCTACATTTCT-CTCGGCC 479
consensus_3217#2      GCCCACGCGTCCGCCCAC--GCGTCCGGGTTTGCAGTGTACAGTGCGTGTGTGTTTTAAT 60
consensus_3217#1      TGGATGACAACCGCCAGGAGCAGACGTACGATGGACCCGCCGGCATGAACCCAGACGGCA 99
                             *   **         *         * *     *                   

consensus_3217#0      TGTCAAAAGATTGCAA--GCAAATATTTTTGTTGTT-CATCCAGCGATGGACAGTTTGGA 536
consensus_3217#2      TGTTTGTTTCCTGTTT--GCTGTCTTTTTAATTGTTACAGCCGTGTACAAGTTGTGTTTT 118
consensus_3217#1      TCATCGAGTCGAACTATAGCGAGTCTTATGACAACTTCGACCAGATG-GGTCTGCGTGAG 158
                      *                 **     ** *      * *  **           *  *   

consensus_3217#0      TAGCT-TGAAAAAGAATCGCCACAGGCTGCTAGACTTCCCTTACCTCAGTGAAAAAGTGT 595
consensus_3217#2      TAACTACGAACGACCATCGAGAAAAGTTAATTAGCTTT--TTCCTGCAGTGGAAAACCCC 176
consensus_3217#1      GAGCTCCTCCGCGGCATTTACGCATACGGTTTCGAGAAACCGTCTGCCATCCAGCAGCGC 218
                       * **          **      *      *            *  *  *  *  *    

consensus_3217#0      GTTTGACATATATTTTCTAGCAGAATATGCCGTGTCTGAACGCGGCTAATGAATTTAACT 655
consensus_3217#2      GCAAAGCCCGTGATTCATTGTAGAAGAGAAAAAA---GAACCAATCTTTTGATATTAGCG 233
consensus_3217#1      GCC-ATTGTGCCGTGCGTGAAAGGAAGCGATGTA---ATCCACTTCATGCGCAACCCGGT 274
                      *            *   *   ** *               *    *    *         

consensus_3217#0      AAAAAGTTTTGTAATTGGTAGATAGGTAAATTGGGCATGCTTTTTTGCATCCAACAACGA 715
consensus_3217#2      TCTGGTTTGTGCGAC--GTCATTTTGTGCTTTC----TGCCATTTGCAATCGATCAGCCA 287
consensus_3217#1      CAAGATTCTGGTGAAGAAGGAGGAGCTGACCCTGGAAGGTATCCGGCAGTTCTACGTCGA 334
                            *   *  *            *           *          *    *  * *

consensus_3217#0      TGACAGAGTAACTTAAATTTGCGATCTGACACGACCATTTCATCGATGACNAAATAGTAA 775
consensus_3217#2      TGA---AGTTTCTAATACTCAT-------------------------------------- 306
consensus_3217#1      CGT--------------------------------------------------------- 337
                       *                                                          

consensus_3217#0      CTTCCATCAGCTGTCACCAGAGTGAAAATCGAATTACGCTACCAATTACGATCAATGTA 834
consensus_3217#2      -----------------------------------------------------------
consensus_3217#1      -----------------------------------------------------------