cluster # 3230

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Anopheles gambiae
cluster # 3230 cluster # 3230 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3230#0 length = 670 sequences # 2

consensus_3230#1 length = 87 sequences # 1

consensusID : consensus_3230#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 670
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGACAACGGAAAGTTGGCAGTATTGTGTCAGTTGTAGTAGCGTTGCAGTTATCCGCTCAAAATGAAAGCGCTCACGTGCGGTTTGGTGATTTTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGGTCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCCAGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACCGAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGGAATCGTTTCCGGTGGAGTGAACGGATCGAATGTGACGCTGAAACTTACCTCCAAACCGTACCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGGCACGAAACTGATTTTCAGCCTCTCCACGCGTGAAGCATTTACAATCCATTCGCGTTTGCATCTGCACTGCGTCCTATACCGATTCCGCTTCGGTAGGGATACTTCGCGGCACTCAAATTTATTATTCAACTAAATGAAAGCATTATTGCAGTGGGAGTGAGAGAGGGAGAGAGTAAAACAAAAACAAATC]

[+] EMBL BM578354             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGACAACGGAAAGTTGGCAGTATTGTGTCAGTTGTAGTAGCGTTGCAGTTATCCGCTCAAAATGAAAGCGCTCACGTGCGGTTTGGTGATTTTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGGTCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCCAGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACCGAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGGAATCGTTTCCGGTGGAGTGAACGGATCGAATGTGACGCTGAAACTTACCTCCAAACCGTACCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGGCACGAAACTGATTTTCAGCCTCTCCACGC                                                                                                                                                                 ]
[+] EMBL BM600880             [                                                                                   ccgGTTATCCGCTCAAAATGAAAGCGCTCACGTGTTGTTTGGTGATTGTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGGTCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCCAGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACCGAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGGAATCGTGTCCGGTGGAGTGAACCAATCGAACGTGACGCTGAAACTTACCTCCAAACCGTACCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGGCACGAAACTGATTTTCAGCCTCTCCACGCGTGAAGCATTTACAATCCATTCGCGTTTGCATCTGCACTGCGTCCTATACCGATTCCGCTTCGGTAGGGATACTTCGCGGCACTCAAATTTATTATTCAACTAAATGAAAGCATTATTGCAGTGGGAGTGAGAGAGGGAGAGAGTAAAACAAAAACAAATC]




>consensus_3230#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGACAACGGAAAGTTGGCAGT
ATTGTGTCAGTTGTAGTAGCGTTGCAGTTATCCGCTCAAAATGAAAGCGCTCACGTGCGG
TTTGGTGATTTTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGG
TCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCC
AGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACC
GAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGG
AATCGTTTCCGGTGGAGTGAACGGATCGAATGTGACGCTGAAACTTACCTCCAAACCGTA
CCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGG
CACGAAACTGATTTTCAGCCTCTCCACGCGTGAAGCATTTACAATCCATTCGCGTTTGCA
TCTGCACTGCGTCCTATACCGATTCCGCTTCGGTAGGGATACTTCGCGGCACTCAAATTT
ATTATTCAACTAAATGAAAGCATTATTGCAGTGGGAGTGAGAGAGGGAGAGAGTAAAACA
AAAACAAATC

consensusID : consensus_3230#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 87
fasta sequence

                              [GGTGACGAGATGTTCACGGACACCCACAAGGTCAAGCTGGTGGACGATGTCATGTACGATGTGCACGGCAAGCACGCGCTCCCGCAC]

[+] EMBL CNS09CDZ             [GGTGACGAGATGTTCACGGACACCCACAAGGTCAAGCTGGTGGACGATGTCATGTACGATGTGCACGGCAAGCACGCGCTCCCGCAC]




>consensus_3230#1
GGTGACGAGATGTTCACGGACACCCACAAGGTCAAGCTGGTGGACGATGTCATGTACGAT
GTGCACGGCAAGCACGCGCTCCCGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3230#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGACAACGGAAAGTTGGCAGT 60
consensus_3230#1      -----------------------------GGTGACGAGATGTTCACGGACA-CCCACAAG 30
                                                   *  *    *  *   ***** *     **  

consensus_3230#0      ATTGTGTCAGTTGTAGTAGCGTTGCAGTTATCCGCTCAAAATGAAAGCGCTCACGTGCGG 120
consensus_3230#1      GTCAAGCTGGTGGACGATGTCATGTA-CGATGTGCACGGCAAGCACGCGCTCCCGCAC-- 87
                       *   *   ** *  *  *   ** *   **  ** *   * * * ****** **  *  

consensus_3230#0      TTTGGTGATTTTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGG 180
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      TCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCC 240
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      AGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACC 300
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      GAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGG 360
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      AATCGTTTCCGGTGGAGTGAACGGATCGAATGTGACGCTGAAACTTACCTCCAAACCGTA 420
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      CCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGG 480
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      CACGAAACTGATTTTCAGCCTCTCCACGCGTGAAGCATTTACAATCCATTCGCGTTTGCA 540
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      TCTGCACTGCGTCCTATACCGATTCCGCTTCGGTAGGGATACTTCGCGGCACTCAAATTT 600
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      ATTATTCAACTAAATGAAAGCATTATTGCAGTGGGAGTGAGAGAGGGAGAGAGTAAAACA 660
consensus_3230#1      ------------------------------------------------------------
                                                                                  

consensus_3230#0      AAAACAAATC 670
consensus_3230#1      ----------