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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 992 fasta sequence
[TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCCCGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTCATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAG-GTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTG-AAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGGGGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA]
[+] EMBL CNS08WZM [TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCCCGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTCATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAG GTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTG AAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGGGGGTTATGGGCAATA ]
[-] EMBL CNS08WZN [ TCAAGCCGAACATAACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCCCCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAGCGTG ACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTGAAAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTTTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCCCAATACCGCCGGGGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA]
consensusID : consensus_3238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[AATNGCCACGAGGCTGATACATCGCGCTCGTGCTATCGCGCTTGTTTCAGCGAGTTTGTGCGCGTAGGCGAGTTTCTAACGCGTCGCAGAGAGATCCAAGCGGTTGCACTGGACACCATGACTATTTCAGCAATCCCACCCCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAATATTCCCACCCCCCACACACACACCCACTATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAAGCATGTGAATCGCTTGGAAGGAAGTTCCCTCCCAACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTT]
[+] EMBL AL932594 [AATNGCCACGAGGCTGATACATCGCGCTCGTGCTATCGCGCTTGTTTCAGCGAGTTTGTGCGCGTAGGCGAGTTTCTAACGCGTCGCAGAGAGATCCAAGCGGTTGCACTGGACACCATGACTATTTCAGCAATCCCACCCCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAATATTCCCACCCCCCACACACACACCCACTATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAAGCATGTGAATCGCTTGGAAGGAAGTTCCCTCCCAACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3238#0 TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCC 60
consensus_3238#1 --------------------------------AATNGCCACGAGGCTGATACATCGCGCT 28
** ** ** * * * *
consensus_3238#0 CGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTC 120
consensus_3238#1 CGT----GCTATCGCGC--TTGTTTCAGCGAGTTTGTGCGCG-----TAGGCGAGTTTCT 77
*** **** * ** *** ** * ** ** ** * ** *
consensus_3238#0 ATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATC 180
consensus_3238#1 AACGCGTCGCAGAGAGATCCAAGCGGT----TGCACTG-GACACCATGACTATT----TC 128
* * * ** * * * * ** * **** * ** ** ** **
consensus_3238#0 AAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCA--ATGCGGTCTTCCTGT 238
consensus_3238#1 AGCAATCCCACC-CCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGT 187
* * * * ** *** * * * * * ** * * *** * ****
consensus_3238#0 ACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGA 298
consensus_3238#1 TC--------TGGCGCCGG-GAGTCCTCCAAGGTGAAGTTCCGCTAC------GATGTGG 232
* *** *** ** ****** * * * * * ** * * *
consensus_3238#0 AGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCG 358
consensus_3238#1 AGGTGCTCGA--GTTCACCAAAGACCCGTACGAGGATCAGCTGC-TCATCACG---GACA 286
***** *** * * * ** * * * * * * *** *** * *
consensus_3238#0 ACGGGACGAGAAACGGGAAGGAG-AAGAACACACGAACATTCTTATACAAAGTGCAAAGT 417
consensus_3238#1 GTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCG 346
* * *** * * *** ** ** * ** * * * * ** *
consensus_3238#0 GCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGT 477
consensus_3238#1 TCGTTTGTGTGACGTGTGTCGCGGCCATTGCC---GTTA--CGGTAGTGCTGCCCTGGTT 401
* * * * * ** **** ** **** * * * * * ** *
consensus_3238#0 AGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAG 537
consensus_3238#1 CCTGATCGGATCGGCTTGAGCATTGGTC---TTGAATATTCCCACCCCCCACACACACAC 458
* ** * * * * * * *** * * ** * * * *
consensus_3238#0 TCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGC 597
consensus_3238#1 CCACT--ATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAA-GAGTGT 515
** * *** * ** * * * ** ** * * * ** * * * * *
consensus_3238#0 GCGGGAGGTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTT 657
consensus_3238#1 TGTGAAAAAGCATGTGAATCGCTTGGAAGGAA-GTTCCCTCCC---AACCCAAGCACACC 571
* * *** ** * ** * * * **** **** *
consensus_3238#0 TTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTGAAGCGCTGGGGGAGGAGAGTGA 717
consensus_3238#1 ACAAT------TGTGATA-GCTGTCCCTA-----GCAGAAAGAGTGAGAAAGTGGTGTGA 619
*** * ***** ** ** * * ** *** ** * ** * ****
consensus_3238#0 GAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTC 777
consensus_3238#1 AACAAAACGGAGTCTACGAAA----GTGTTAGGGACATTT-------------------- 655
* * ** * * * * * ***** **
consensus_3238#0 CGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCG 837
consensus_3238#1 ------------------------------------------------------------
consensus_3238#0 GTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATT 897
consensus_3238#1 ------------------------------------------------------------
consensus_3238#0 GTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGG 957
consensus_3238#1 ------------------------------------------------------------
consensus_3238#0 GGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA 992
consensus_3238#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||