cluster # 3241

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Anopheles gambiae
cluster # 3241 cluster # 3241 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3241#0 length = 804 sequences # 2

consensus_3241#1 length = 692 sequences # 1

consensusID : consensus_3241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 804
fasta sequence

                              [TTACACACCGCAAGTGGAAGCTGATGGTTAAGACCGAAACACAACTTTGAAGCAGATAACTGTACGCGCTTGGAACTTGAGTGATTTTCGCTGATAAATTATTAGCGTTTTACTTGTACGCGCTACACGTGGAGCCGCTTCATGCGCCATCTTTGATGAAGGCGTTGAGTTGTAGAAACAGCGGCGACACACGCGTGGTGCAGTTTGTGATATGAAATGAACTAATGTGCTGTTCTTTTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACCATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTTGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGTCAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAANGCCAACCGGTACCGTGCGGATCTGCGCGGAGCCGCCCTTCGCCGTGCCAGCGCCATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGAGCTGCGCCGGCAGCAGCCACCGCCGCTGCCGCCGGTACCGCCGCGGCTGCCGCTCCCAAGAAGGCCGAGTAAGCGTCTTTTTGAGAGGGGGAAGGAGGTTGATTCTTGC]

[+] EMBL BX621016             [TTACACACCGCAAGTGGAAGCTGATGGTTAAGACCGAAACACAACTTTGAAGCAGATAACTGTACGCGCTTGGAACTTGAGTGATTTTCGCTGATAAATTATTAGCGTTTTACTTGTACGCGCTACACGTGGAGCCGCTTCATGCGCCATCTTTGATGAAGGCGTTGAGTTGTAGAAACAGCGGCGACACACGCGTGGTGCAGTTTGTGATATGAAATGAACTAATGTGCTGTTCTTTTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACCATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTTGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGTCAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAANGCCAACCGGTACCGTGCGGAT                                                                                                                                                                                              ]
[+] EMBL BM614877             [                                                                                                                                                                                                                                           ccgTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACCATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTCGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGTCAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAAGGCCAACCGGTACCGTGCGGATCTGCGCGGAGCCGCCCTTCGCCGTGCCAGCGCCATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGAGCTGCGCCGGCAGCAGCCACCGCCGCTGCCGCCGGTACCGCCGCGGCTGCCGCTCCCAAGAAGGCCGAGTAAGCGTCTTTTTGAGAGGGGGAAGGAGGTTGATTCTTGC]




>consensus_3241#0
TTACACACCGCAAGTGGAAGCTGATGGTTAAGACCGAAACACAACTTTGAAGCAGATAAC
TGTACGCGCTTGGAACTTGAGTGATTTTCGCTGATAAATTATTAGCGTTTTACTTGTACG
CGCTACACGTGGAGCCGCTTCATGCGCCATCTTTGATGAAGGCGTTGAGTTGTAGAAACA
GCGGCGACACACGCGTGGTGCAGTTTGTGATATGAAATGAACTAATGTGCTGTTCTTTTG
TTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACTGGTTGA
TCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCA
CGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTT
ACAGTGGGCTGGTCCACCACAAGACCATCACGATTACGCCGGCTGAGAAGAAGGGCGTCA
ACTTTGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGTCAAGGTCA
CGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAANGCCAACC
GGTACCGTGCGGATCTGCGCGGAGCCGCCCTTCGCCGTGCCAGCGCCATCCTTCGCTCGC
AGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGAGCTGCGCCGGCAGCAGCCACCGCCG
CTGCCGCCGGTACCGCCGCGGCTGCCGCTCCCAAGAAGGCCGAGTAAGCGTCTTTTTGAG
AGGGGGAAGGAGGTTGATTCTTGC

consensusID : consensus_3241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [CCGCCCACGCGTCCGTACAACGCCAGCTCCAGGTGGTGGGTGAAACAACAGTCCGCTTCCGCAGGATCAGCAATCAACGCACGCGAAAGGAGGTGTGCATCTGTGCGTGTAAAAAGCCCGGCCGCAACGCAACGCAAAAGTTGACACCATCACTTACCCGCTGCAGTTAACAAAACCGTCCGAGCAAGGAGAGCAAGCAAATAGATACAACGAACGAACGTAGCGCCCAGACAGTAAATACGAACGCGGAAGGTTTCTTTTTTTCTCTCTGGCGCGCCGGATTAACGTTCTTTTAACATATATACACACACACACACGTTTGACGTAAAAAAAAACCACAACAAGCAATTAAAAGGCAAACAACGATGCCGGAAAGTGGACCCGTGTACCAGCCGACGACGGTCTCGTTCGAGGCGCGTCCGAGCGCGGGCGGACTGCTGGCCCAAACTACGGCCGTCTCGTCGATGAAGATGCTGCGCAAACCGGCCATCCAGGTGTCGATACTGGTGTTCGGCTTGATCATGTTTGCCACAGGAATCGCACTGGTTGCTAGCGGCTCGGCAGACTACTCCGATGCGGAGCAGCACCCGGAAATCAACCCGGAGGGCAAGGTGCAGGAGGAGCGCATCGACGTCGGGCTGATCGTGACCGGGGCAATCATCACGCTGTTCGGAATCGTTTTTCCTCGGACT]

[+] EMBL BM623899             [CCGCCCACGCGTCCGTACAACGCCAGCTCCAGGTGGTGGGTGAAACAACAGTCCGCTTCCGCAGGATCAGCAATCAACGCACGCGAAAGGAGGTGTGCATCTGTGCGTGTAAAAAGCCCGGCCGCAACGCAACGCAAAAGTTGACACCATCACTTACCCGCTGCAGTTAACAAAACCGTCCGAGCAAGGAGAGCAAGCAAATAGATACAACGAACGAACGTAGCGCCCAGACAGTAAATACGAACGCGGAAGGTTTCTTTTTTTCTCTCTGGCGCGCCGGATTAACGTTCTTTTAACATATATACACACACACACACGTTTGACGTAAAAAAAAACCACAACAAGCAATTAAAAGGCAAACAACGATGCCGGAAAGTGGACCCGTGTACCAGCCGACGACGGTCTCGTTCGAGGCGCGTCCGAGCGCGGGCGGACTGCTGGCCCAAACTACGGCCGTCTCGTCGATGAAGATGCTGCGCAAACCGGCCATCCAGGTGTCGATACTGGTGTTCGGCTTGATCATGTTTGCCACAGGAATCGCACTGGTTGCTAGCGGCTCGGCAGACTACTCCGATGCGGAGCAGCACCCGGAAATCAACCCGGAGGGCAAGGTGCAGGAGGAGCGCATCGACGTCGGGCTGATCGTGACCGGGGCAATCATCACGCTGTTCGGAATCGTTTTTCCTCGGACT]




>consensus_3241#1
CCGCCCACGCGTCCGTACAACGCCAGCTCCAGGTGGTGGGTGAAACAACAGTCCGCTTCC
GCAGGATCAGCAATCAACGCACGCGAAAGGAGGTGTGCATCTGTGCGTGTAAAAAGCCCG
GCCGCAACGCAACGCAAAAGTTGACACCATCACTTACCCGCTGCAGTTAACAAAACCGTC
CGAGCAAGGAGAGCAAGCAAATAGATACAACGAACGAACGTAGCGCCCAGACAGTAAATA
CGAACGCGGAAGGTTTCTTTTTTTCTCTCTGGCGCGCCGGATTAACGTTCTTTTAACATA
TATACACACACACACACGTTTGACGTAAAAAAAAACCACAACAAGCAATTAAAAGGCAAA
CAACGATGCCGGAAAGTGGACCCGTGTACCAGCCGACGACGGTCTCGTTCGAGGCGCGTC
CGAGCGCGGGCGGACTGCTGGCCCAAACTACGGCCGTCTCGTCGATGAAGATGCTGCGCA
AACCGGCCATCCAGGTGTCGATACTGGTGTTCGGCTTGATCATGTTTGCCACAGGAATCG
CACTGGTTGCTAGCGGCTCGGCAGACTACTCCGATGCGGAGCAGCACCCGGAAATCAACC
CGGAGGGCAAGGTGCAGGAGGAGCGCATCGACGTCGGGCTGATCGTGACCGGGGCAATCA
TCACGCTGTTCGGAATCGTTTTTCCTCGGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3241#0      TTACACACCGCAAGTGGAAGCTGATGGTTAAGACCGAAACACAACTTTGAAGCAGATAAC 60
consensus_3241#1      -----------CCGCCCACGCGTCCGTACAACGCCAGCTCCAGGTGGTGGGTGAAACAAC 49
                                   *   * **    *   **  **    *       **    * * ***

consensus_3241#0      TGTACGCGCTTGGAACTTGAGTGATTTTCGCTGATAAATTATTAGCGTTTTACTTGTACG 120
consensus_3241#1      AGTCCGCTTCCGCAGGATCAGCAATCAACGCACGCGAA--AGGAGGTGTGCATCTGTGCG 107
                       ** ***    * *   * **  **   ***     **  *  **   *  *  *** **

consensus_3241#0      CGCTACACGTGGAGCCGCTTCATG-CGCCATCTTTGATGAAGGCGTTGA---GTTGTAGA 176
consensus_3241#1      TGTAAAAAGCCCGGCCGCAACGCAACGCAAAAGTTGACACCATCACTTACCCGCTGCAGT 167
                       *  * * *    *****  *    *** *   ****      *  * *   * ** ** 

consensus_3241#0      -AACAGCGGCGACACA-CGCGTGGTGCAGTTTGTGATATGAAATGAACTAATGTGCTGTT 234
consensus_3241#1      TAACAAAACCGTCCGAGCAAGGAGAGCAAGCAAATAGATACAACGAACGAACGTAGCGCC 227
                       ****    ** *  * *  *  * ***       * **  ** **** ** **   *  

consensus_3241#0      CTTTTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACT 294
consensus_3241#1      CA---GACAGTAAA------TACGAACGCGGAAGGTTTCTTTTTTTCTCTCTGGCGCGCC 278
                      *    *   **  *       *  * *  * **   *  *    *  ** *    *  * 

consensus_3241#0      GGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATC-CGGAAGCCG 353
consensus_3241#1      GGATTAACGTTC----TTTTAACATATATACACACACACACACGTTTGACGTAAAAAAAA 334
                      ** * * *** *    *   ***   *     *  *  *  * *     *    **    

consensus_3241#0      TTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCG 413
consensus_3241#1      ACCACAACAAGCAATTAAAAGGCAAACAACGATGCCGGAAAGTGGACC--CGTGTACCAG 392
                        **  ** * * *   **   *     * **  *******   ****  * **  *  *

consensus_3241#0      TTCCGTTACAGTGGGCTGGTCCACCACAAGACC-ATCACGATTACGCCGGCTGAGAAGAA 472
consensus_3241#1      --CCG--ACGACGGTCTCGTTCGAGGCGCGTCCGAGCGCGGGCG-GACTGCTGGCCCAAA 447
                        ***  **   ** ** ** *    *  * ** * * **     * * ****     **

consensus_3241#0      GGGCGTCAACTTTGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGT 532
consensus_3241#1      CTACGGCCGTCTCGTCGAT--------GAAGATGCTGCGCAAACCGGCCATCCAGGTGTC 499
                         ** *    * **  *         **** *  **  *** ** ****    *     

consensus_3241#0      CAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAA 592
consensus_3241#1      GATACTGGTGTTC--GGCTTGATCATGTT---TGCCACAGGA-ATCGC--ACTGGTTGCT 551
                       *   *   * **  **   ** *  **     **   ** * ** **  **  * **  

consensus_3241#0      NGCCAACCGGTACCGTGCGGATCTGCGCGGAGCCGCCCTTCGCCGTGCCAGCGCCATCCT 652
consensus_3241#1      AGCGGCTCGGCAGACTAC--TCCGATGCGGAGCAGCAC---------CCGGAAATCAACC 600
                       **    *** *   * *    *   ******* ** *         ** *       * 

consensus_3241#0      TCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGAGCTGCGCCGGCAGCAGC 712
consensus_3241#1      CGGAGGGCAAGGTGCAGGAGGAGCGCATCGACGTCGGGCTGA--TCGTGACCGGGGCAAT 658
                        *   ***  ** *        * *      **  *****     * * * *  ***  

consensus_3241#0      CACCGCCGCTGCCGCCGGTACCGCCGCGGCTGCCGCTCCCAAGAAGGCCGAGTAAGCGTC 772
consensus_3241#1      CATCAC-GCTGT--TCGGAATCGTTTTTCCTCGGACT----------------------- 692
                      ** * * ****    *** * **      **    **                       

consensus_3241#0      TTTTTGAGAGGGGGAAGGAGGTTGATTCTTGC 804
consensus_3241#1      --------------------------------