cluster # 3249

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Anopheles gambiae
cluster # 3249 cluster # 3249 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3249#0 length = 1018 sequences # 2

consensus_3249#1 length = 136 sequences # 1

consensusID : consensus_3249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1018
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTCGCGACCAGCCTGCTGCTGGTGGTTGCCTTGACCGTGACCGCCACCGTCGCCTATCCAGCGAGCTACGAGAAGGAGTCAAACTCGGATGCCTCGGATGATGCAGAGTATATTGTGGTGCCGCTGTCACACCATCGCCCCACGTACTACAACCGTTATCCGTCGTCGTTCGAAGGCTTTGATGGTGTGGTAGATACCGGTGACTTTGCACCAGTGCCGGCCAGACCCGTGTACTTCCCATCGTACAATCCGTTCTCGTGGCATCTATCCGGATATCTGGATGATCTTCTGAAGCGTGTCCGCGATCGTTTCTCTGGTTCGTGGAATCCATTCTACGGTGGTGACTACCTGCCATCCGGACCAGGCTTCTTCCCAGTGGAAATTCCGGATGACTCGTCGGAAGATGGGGTCACTAACACTACCTCCACTGTGAAGGTCATCGATGGGCACAAGGTCGTCATTAATGATACGTACTACACAAAGAAGACGGAGTTCGGTACCTCAATCTTTAAGGTGCGTGTCATCGACGTGAAGCCAACGGACGATGGTAGCGCCGAGGCTACGACCCCCAAAGCACCGACCGATGTTGAGGTGGGCAATCGTAACGGTGACGATGGTGCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCGCCCAAGCGCGATACCGAGCTGGAATCGAGCGATGAAGACAAGACGACGGTGGACGAAGACAATCTGAACACGATCGATACGTCCAACGTGGACATAGACGAGGCGAAGGAAAGGGTGGCACCGGAGGAGGCGGAGGAGCAGAACTAGAAGCGGTGGCCAGAAGTGACATACCACACGTCGGTGGGGCGGCTCCAGATGCGGCTGTACATCACGCAACGCAATGCATCAGACAACGGCACGGAGAATAGAACACGGAGAGAGGGAAGGGAATGGGAGCTCGATGATGCCCGGGAGAGTGGAGTTTTAGGGTGGGATGGCA]

[+] EMBL BM577526             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTCGCGACCAGCCTGCTGCTGGTGGTTGCCTTGACCGTGACCGCCACCGTCGCCTATCCAGCGAGCTACGAGAAGGAGTCAAACTCGGATGCCTCGGATGATGCAGAGTATATTGTGGTGCCGCTGTCACACCATCGCCCCACGTACTACAACCGTTATCCGTCGTCGTTCGAAGGCTTTGATGGTGTGGTAGATACCGGTGACTTTGCACCAGTGCCGGCCAGACCCGTGTACTTCCCATCGTACAATCCGTTCTCGTGGCATCTATCCGGATATCTGGATGATCTTCTGAAGCGTGTCCGCGATCGTTTCTCTGGTTCGTGGAATCCATTCTACGGTGGTGACTACCTGCCATCCGGACCAGGCTTCTTCCCAGTGGAAATTCCGGATGACTCGTCGGAAGATGGGGTCACTAACACTACCTCCACTGTGAAGGTCATCGATGGGCACAAGGTCGTCATTAATGATACGTACTACACAAAGAAGACGGAGTTCGGTACCTCAATCTTTAAGGTGCGTGTCATCGACGTGAAGCCAACGGACGATGGTAGCGCCGAGGCTACGACCCCCAAAGCACCGACCGATGTTGAGGTGGGCAATCGTAACGGTGACGATGGTGCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCG                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX608242             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTCATCGACGTGAAGCCAACGGACGAAGGTAGCGCCGAGGCTACGACCCCCAAAGCACCGACCGATGTCGAGGTGGGCAATCGTAACGGTGACGAAGGTGCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCGCCCAAGCGCGATACCGAGCTGGAATCGAGCGATGAAGACAAGACGACGGTGGACGAAGACAATCTGAACACGATCGATACGTCCAACGTGGACATAGACGAGGCGAAGGAAAGGGTGGCACCGGAGGAGGCGGAGGAGCAGAACTAGAAGCGGTGGCCAGAAGTGACATACCACACGTCGGTGGGGCGGCTCCAGATGCGGCTGTACATCACGCAACGCAATGCATCAGACAACGGCACGGAGAATAGAACACGGAGAGAGGGAAGGGAATGGGAGCTCGATGATGCCCGGGAGAGTGGAGTTTTAGGGTGGGATGGCA]




>consensus_3249#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTCGCGACCAGCCTGCTGCTG
GTGGTTGCCTTGACCGTGACCGCCACCGTCGCCTATCCAGCGAGCTACGAGAAGGAGTCA
AACTCGGATGCCTCGGATGATGCAGAGTATATTGTGGTGCCGCTGTCACACCATCGCCCC
ACGTACTACAACCGTTATCCGTCGTCGTTCGAAGGCTTTGATGGTGTGGTAGATACCGGT
GACTTTGCACCAGTGCCGGCCAGACCCGTGTACTTCCCATCGTACAATCCGTTCTCGTGG
CATCTATCCGGATATCTGGATGATCTTCTGAAGCGTGTCCGCGATCGTTTCTCTGGTTCG
TGGAATCCATTCTACGGTGGTGACTACCTGCCATCCGGACCAGGCTTCTTCCCAGTGGAA
ATTCCGGATGACTCGTCGGAAGATGGGGTCACTAACACTACCTCCACTGTGAAGGTCATC
GATGGGCACAAGGTCGTCATTAATGATACGTACTACACAAAGAAGACGGAGTTCGGTACC
TCAATCTTTAAGGTGCGTGTCATCGACGTGAAGCCAACGGACGATGGTAGCGCCGAGGCT
ACGACCCCCAAAGCACCGACCGATGTTGAGGTGGGCAATCGTAACGGTGACGATGGTGCG
GAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCGCCCAAGCGCGATACCGAGCTG
GAATCGAGCGATGAAGACAAGACGACGGTGGACGAAGACAATCTGAACACGATCGATACG
TCCAACGTGGACATAGACGAGGCGAAGGAAAGGGTGGCACCGGAGGAGGCGGAGGAGCAG
AACTAGAAGCGGTGGCCAGAAGTGACATACCACACGTCGGTGGGGCGGCTCCAGATGCGG
CTGTACATCACGCAACGCAATGCATCAGACAACGGCACGGAGAATAGAACACGGAGAGAG
GGAAGGGAATGGGAGCTCGATGATGCCCGGGAGAGTGGAGTTTTAGGGTGGGATGGCA

consensusID : consensus_3249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [CGTTTATTTAAATAGCTTCTGATTGATATGATTTACTGCTAACAACGCTTGCTGCTTGCTCTACGAGGTCAACGAGATACGATTTGGAAATGGTTTACAGCAAACAACAAAAGGCTTATACGACCAGCACGCAGCA]

[+] EMBL CNS090D6             [CGTTTATTTAAATAGCTTCTGATTGATATGATTTACTGCTAACAACGCTTGCTGCTTGCTCTACGAGGTCAACGAGATACGATTTGGAAATGGTTTACAGCAAACAACAAAAGGCTTATACGACCAGCACGCAGCA]




>consensus_3249#1
CGTTTATTTAAATAGCTTCTGATTGATATGATTTACTGCTAACAACGCTTGCTGCTTGCT
CTACGAGGTCAACGAGATACGATTTGGAAATGGTTTACAGCAAACAACAAAAGGCTTATA
CGACCAGCACGCAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3249#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTCGCGACCAGCCTGCTGCTG 60
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      GTGGTTGCCTTGACCGTGACCGCCACCGTCGCCTATCCAGCGAGCTACGAGAAGGAGTCA 120
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      AACTCGGATGCCTCGGATGATGCAGAGTATATTGTGGTGCCGCTGTCACACCATCGCCCC 180
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      ACGTACTACAACCGTTATCCGTCGTCGTTCGAAGGCTTTGATGGTGTGGTAGATACCGGT 240
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      GACTTTGCACCAGTGCCGGCCAGACCCGTGTACTTCCCATCGTACAATCCGTTCTCGTGG 300
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      CATCTATCCGGATATCTGGATGATCTTCTGAAGCGTGTCCGCGATCGTTTCTCTGGTTCG 360
consensus_3249#1      --------CGTTTATTTAAATAG-CTTCTGATTGATATGATTTACTGCTAACAACGCTTG 51
                              **  *** *  **   *******    * *     *  * *      * * *

consensus_3249#0      TGGAATCCATTCTACGGTGGTGACTACCTGCCATCCGGACCAGGCTTCTTCC---CAGTG 417
consensus_3249#1      CTG--CTTGCTCTACGAGGTCAACGAGATACGATTTGGAAATGGTTTACAGCAAACAACA 109
                        *       ******  *   ** *  * * **  ***   ** **    *   **   

consensus_3249#0      GAAATTCCGGATGACTCGTCGGAAGATGGGGTCACTAACACTACCTCCACTGTGAAGGTC 477
consensus_3249#1      AAAGGCTTATACGACCAGCACGCAGCA--------------------------------- 136
                       **       * ***  *   * **                                   

consensus_3249#0      ATCGATGGGCACAAGGTCGTCATTAATGATACGTACTACACAAAGAAGACGGAGTTCGGT 537
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      ACCTCAATCTTTAAGGTGCGTGTCATCGACGTGAAGCCAACGGACGATGGTAGCGCCGAG 597
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      GCTACGACCCCCAAAGCACCGACCGATGTTGAGGTGGGCAATCGTAACGGTGACGATGGT 657
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      GCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCGCCCAAGCGCGATACCGAG 717
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      CTGGAATCGAGCGATGAAGACAAGACGACGGTGGACGAAGACAATCTGAACACGATCGAT 777
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      ACGTCCAACGTGGACATAGACGAGGCGAAGGAAAGGGTGGCACCGGAGGAGGCGGAGGAG 837
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      CAGAACTAGAAGCGGTGGCCAGAAGTGACATACCACACGTCGGTGGGGCGGCTCCAGATG 897
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      CGGCTGTACATCACGCAACGCAATGCATCAGACAACGGCACGGAGAATAGAACACGGAGA 957
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      GAGGGAAGGGAATGGGAGCTCGATGATGCCCGGGAGAGTGGAGTTTTAGGGTGGGATGGC 1017
consensus_3249#1      ------------------------------------------------------------
                                                                                  

consensus_3249#0      A 1018
consensus_3249#1      -