cluster # 3251

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Anopheles gambiae
cluster # 3251 cluster # 3251 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3251#0 length = 755 sequences # 2

consensus_3251#1 length = 93 sequences # 1

consensusID : consensus_3251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 755
fasta sequence

                              [GGCGAGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATGAAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAAGCTTTTCTCCTTAATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATATTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTTCAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACAAATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCGAAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTATGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTCGATTTTCCATCC------AAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACAATTTTGTGTTTTTTTAAACTGGTG-TTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGTTGAACTATTGAATTCTGTCTGTACATATTTCAGGAGATTTGAAGATTAGCACAGGATTAAATTCAATCATGGAATTCGAATCAATTAAATAATAACTCATTTTTATTATTAATGCACTTCAAAAAATAATAAAAGATGAAATCAACCAGTTTCTT]

[+] EMBL BX608371             [GGCGAGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATGAAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAAGCTTTTCTCCTTAATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATATTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTTCAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACAAATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCGAAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTATGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTCGATTTTCCATCC      AAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACAATTTTGTGTTTTTTTAAACTGGTG TTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGTTGAACTATTGAATTCTGTCTGTACATATTTCAGGAGATTTGAAGATTAGCACAGGATTAAATTCAATCATGGAATTCGAATCAATTAAATAATAACTCATTTTTATTATTAATGCACTTCAAAAAATAATAAAAGATGAAATCAACCAGTTTCTT]
[+] EMBL BM627208             [   ccGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATGAAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAACCTTTTCTCCTTAATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATATTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTTCAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACAAATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCGAAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTATGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTCGTTTTTCCATCCAAAAAAAAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACAATTTTGTGTTTTTTTAAACTGGTGTTTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGTTGAACTAT                                                                                                                                                   ]




>consensus_3251#0
GGCGAGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATG
AAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAAGCTTTTCTCCTTA
ATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATA
TTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTT
CAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACA
AATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCG
AAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTA
TGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTC
GATTTTCCATCCAAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACA
ATTTTGTGTTTTTTTAAACTGGTGTTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGT
TGAACTATTGAATTCTGTCTGTACATATTTCAGGAGATTTGAAGATTAGCACAGGATTAA
ATTCAATCATGGAATTCGAATCAATTAAATAATAACTCATTTTTATTATTAATGCACTTC
AAAAAATAATAAAAGATGAAATCAACCAGTTTCTT

consensusID : consensus_3251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 93
fasta sequence

                              [GCAATTGACAGCGATTTGCGAGGGCGCGCGAGGGCTTGCACGCCATACAAGTTCACAGCACCAGAGCCATCGCATTAAAGAGCTTGAAAGCCT]

[+] EMBL BX618193             [GCAATTGACAGCGATTTGCGAGGGCGCGCGAGGGCTTGCACGCCATACAAGTTCACAGCACCAGAGCCATCGCATTAAAGAGCTTGAAAGCCT]




>consensus_3251#1
GCAATTGACAGCGATTTGCGAGGGCGCGCGAGGGCTTGCACGCCATACAAGTTCACAGCA
CCAGAGCCATCGCATTAAAGAGCTTGAAAGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3251#0      GGCGAGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATG 60
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      AAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAAGCTTTTCTCCTTA 120
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      ATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATA 180
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      TTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTT 240
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      CAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACA 300
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      AATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCG 360
consensus_3251#1      --------------------------------------GCAATTG--ACAGCGATTTGCG 20
                                                              ** **  * * * *   ***

consensus_3251#0      AAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTA 420
consensus_3251#1      AGGGCGC-GCGAGGGCTTGCACGCCATACAAGTTCACAGCACCAGAGCCATCGCATTAAA 79
                      *     * **   **** *** **  *  **    *  ** *  * **  *    **  *

consensus_3251#0      TGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTC 480
consensus_3251#1      GAGCTTGAAAGCCT---------------------------------------------- 93
                        ** **  ****                                               

consensus_3251#0      GATTTTCCATCCAAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACA 540
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      ATTTTGTGTTTTTTTAAACTGGTGTTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGT 600
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      TGAACTATTGAATTCTGTCTGTACATATTTCAGGAGATTTGAAGATTAGCACAGGATTAA 660
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      ATTCAATCATGGAATTCGAATCAATTAAATAATAACTCATTTTTATTATTAATGCACTTC 720
consensus_3251#1      ------------------------------------------------------------
                                                                                  

consensus_3251#0      AAAAAATAATAAAAGATGAAATCAACCAGTTTCTT 755
consensus_3251#1      -----------------------------------