cluster # 3253

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Anopheles gambiae
cluster # 3253 cluster # 3253 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3253#0 length = 1166 sequences # 2

consensus_3253#1 length = 640 sequences # 1

consensusID : consensus_3253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1166
fasta sequence

                              [CGCGTAAATTACCAATCCCGGCACGGGTAGGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCTTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCGTCGCGGGCGCCCGGCCTCTCGGTTGGGACCATCCGTGTACGCGCTCGCGGCTGCGACTCACAATGGTGTACCTGGGCGTTCTACTCCGTGACGGGTCAGGACTTGTCGCCGCGACCTCGTCGGTCAAGGTCTTGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAACTTTTACGAGAAATCGTCGTCGACGCACGT-GTGTTCGCGGTTGTTCAGTGAGTGAGCTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCTGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATCACGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAGACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCATGGGGGAAAAAACAACTAACAAACACAACAATGCCAGAGTCTAGCAACAGAAGTAAAAGTATAGATTTATGAAATAAACAAAGCTAACACTAAACAGGTGAAGGGTTAGTTCGAACTACTGGGGAATAGATACATAAGGTAAACTCAATTTTACACACACACAACCCAACACAACAGCTATGAGGCAAGAGGTAGTAACATGAAAATAAAAGAATAAAACGAAACAATCTTCC]

[+] EMBL CNS09K1U             [CGCGTAAATTACCAATCCCGGCACGGGTAGGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCTTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCGTCGCGGGCGCCCGGCCTCTCGGTTGGGACCATCCGTGTACGCGCTCGCGGCTGCGACTCACAATGGTGTACCTGGGCGTTCTACTCCGTGACGGGTCAGGACTTGTCGCCGCGACCTCGTCGGTCAAGGTCTTGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAACTTTTACGAGAAATCGTCGTCGACGCACGT GTGTTCGCGGTTGTTCAGTGAGTGAGCTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCTGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTAC                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX608758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGCACGTCGTGTTCGCGGTTGTTCAGTGAGTGAGCTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCTGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCTTGACTACCAGCGGTGGCATCATGGATCACGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAGACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCATGGGGGAAAAAACAACTAACAAACACAACAATGCCAGAGTCTAGCAACAGAAGTAAAAGTATAGATTTATGAAATAAACAAAGCTAACACTAAACAGGTGAAGGGTTAGTTCGAACTACTGGGGAATAGATACATAAGGTAAACTCAATTTTACACACACACAACCCAACACAACAGCTATGAGGCAAGAGGTAGTAACATGAAAATAAAAGAATAAAACGAAACAATCTTCC]




>consensus_3253#0
CGCGTAAATTACCAATCCCGGCACGGGTAGGTAGTGACGAGAAATAACAATATGGACCTC
TCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCTTTTGCAAGGATCAAGTG
GAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGT
TGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCGTCGCGGGCGC
CCGGCCTCTCGGTTGGGACCATCCGTGTACGCGCTCGCGGCTGCGACTCACAATGGTGTA
CCTGGGCGTTCTACTCCGTGACGGGTCAGGACTTGTCGCCGCGACCTCGTCGGTCAAGGT
CTTGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAAC
TTTTACGAGAAATCGTCGTCGACGCACGTGTGTTCGCGGTTGTTCAGTGAGTGAGCTGCC
AAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATC
AACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTG
ATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGAC
GATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATC
ATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCTGCTG
CCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATCACGAG
GAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAGACCA
GCAACAGCAACTCCCCCTTACCCAGAAACAGCATGGGGGAAAAAACAACTAACAAACACA
ACAATGCCAGAGTCTAGCAACAGAAGTAAAAGTATAGATTTATGAAATAAACAAAGCTAA
CACTAAACAGGTGAAGGGTTAGTTCGAACTACTGGGGAATAGATACATAAGGTAAACTCA
ATTTTACACACACACAACCCAACACAACAGCTATGAGGCAAGAGGTAGTAACATGAAAAT
AAAAGAATAAAACGAAACAATCTTCC

consensusID : consensus_3253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGCACTGTGGGACCCCACATCCAACCACAGACGCAGGCTCCCTTTTTCGCATGGTCCCGACAACAACACCACCCCAGTGTGTGCTAATTGATTTACCCACATATTAAGGGATGACGATTATAGGAAAAAGAAAAGAAAAGAAAAACAAACGTGTGCGTGGGGTTAAGTTAACGTTTTCTTCTTCATCTTCTGATGGGATGGCTATAAGTTGGAATTTACAATTACAGCAAATAGAGAAGAATCCGACGCCACGACGCCGCCGCCGCTGTGCTTAAAC]

[+] EMBL BM642654             [CCGCGGACGCGTGGGCGGACGCGTGGGGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGCACTGTGGGACCCCACATCCAACCACAGACGCAGGCTCCCTTTTTCGCATGGTCCCGACAACAACACCACCCCAGTGTGTGCTAATTGATTTACCCACATATTAAGGGATGACGATTATAGGAAAAAGAAAAGAAAAGAAAAACAAACGTGTGCGTGGGGTTAAGTTAACGTTTTCTTCTTCATCTTCTGATGGGATGGCTATAAGTTGGAATTTACAATTACAGCAAATAGAGAAGAATCCGACGCCACGACGCCGCCGCCGCTGTGCTTAAAC]




>consensus_3253#1
CCGCGGACGCGTGGGCGGACGCGTGGGGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGA
CAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATT
AATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAAC
CATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCA
GACACTCAAAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGA
CAGAGAAGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGG
GACTGCACTGTGGGACCCCACATCCAACCACAGACGCAGGCTCCCTTTTTCGCATGGTCC
CGACAACAACACCACCCCAGTGTGTGCTAATTGATTTACCCACATATTAAGGGATGACGA
TTATAGGAAAAAGAAAAGAAAAGAAAAACAAACGTGTGCGTGGGGTTAAGTTAACGTTTT
CTTCTTCATCTTCTGATGGGATGGCTATAAGTTGGAATTTACAATTACAGCAAATAGAGA
AGAATCCGACGCCACGACGCCGCCGCCGCTGTGCTTAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3253#0      CGCGTAAATTACCAATCCCGGCACGGGTAGGTAGTGACGAGAAATAACAATATGGACCTC 60
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      TCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCTTTTGCAAGGATCAAGTG 120
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      GAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGT 180
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      TGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCGTCGCGGGCGC 240
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      CCGGCCTCTCGGTTGGGACCATCCGTGTACGCGCTCGCGGCTGCGACTCACAATGGTGTA 300
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      CCTGGGCGTTCTACTCCGTGACGGGTCAGGACTTGTCGCCGCGACCTCGTCGGTCAAGGT 360
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      CTTGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAAC 420
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      TTTTACGAGAAATCGTCGTCGACGCACGTGTGTTCGCGGTTGTTCAGTGAGTGAGCTGCC 480
consensus_3253#1      ---------------------CCGCGGACGCGTGGGCGGACGCGTGGGGGAAGGCCTGCC 39
                                            ***    * **  ****  *    * *   *  *****

consensus_3253#0      AAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATC 540
consensus_3253#1      AGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAG-CAGCAGCAGC 98
                      * *  *   *    *           * * * **    *****  **   **   *** *

consensus_3253#0      AACAACG-CGGAGAAGCGCGGCAAGC-GCCAGGTCC--TCATCCGGCCGAACTCGAAGGT 596
consensus_3253#1      AACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGT 158
                      ******  *  *          **    *** ** *  * **     ****   *   **

consensus_3253#0      CGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGT 656
consensus_3253#1      TGTGTGTGGGCTGCTG-----CAAAACCATCCGCAGCAGGA-CAGCCAACACAGCACAG- 211
                       ***     * * ***     **  *  *  * * **   * * ** *   *   *  * 

consensus_3253#0      GGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGG 716
consensus_3253#1      GACTTATTTACACA-CAGAAAAGCA------AATCAGACA------CTCAA-AAGCAAGG 257
                      *    **   * ** * * ** *        **** ***       ***** ***   **

consensus_3253#0      CATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCT 776
consensus_3253#1      CATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAG----AAGAGTTT 313
                      ***          ****  ** *      *      *** *  * * *    ** *   *

consensus_3253#0      GCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATCA 836
consensus_3253#1      CACACGCACACACCAACACACACACACAATAC--------------AGTGCTGCAAATTG 359
                          * * * *  **        **    * *               *        **  

consensus_3253#0      CGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAG 896
consensus_3253#1      GGACTGCACTGTGGGACCCCACATCCAACCACAGACGC-AGGCTCCCTTTTTCGCATGGT 418
                       **     *   * *    **  *   *  * ***  *  **** * * **    *    

consensus_3253#0      ACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCATGGGGGAAAAAACAACTAACAAA 956
consensus_3253#1      CCCGACAACAACACCACCCCAGTGTGTGCTAATTGATTTACCCACATATTAAGGGATGAC 478
                       **  ***** ** * ****  *       **  *  *     * * *  **   *  * 

consensus_3253#0      CACAACAATGCCAGAGTCTAGCAACAGAAGTAAAAGTATAGATTTA-TGAAATAAACAAA 1015
consensus_3253#1      GATTATAGGAAAAAGAAAAGAAAAGAAAAACAAACGTGTGCGTGGGGTTAAGTTAACGTT 538
                       *  * *     *         ** * **  *** ** *   *    * ** * ***   

consensus_3253#0      GCTAACACTAAACAGGTGAAGGGTTAGTTCGAACTACTGGGGAATAGATACATAAGGTAA 1075
consensus_3253#1      -TTCTTCTTCATCTTCTGATGGGATGGCTATAAGTTGGAATTTACAATTACAGCAAATAG 597
                        *     * * *   *** *** * * *  ** *        * *  ****  *  ** 

consensus_3253#0      ACTCAATTTTACACACACACAACCCAACACAACAGCTATGAGGCAAGAGGTAGTAACATG 1135
consensus_3253#1      AGAAGAATCCG-ACGC-CACGACGC--CGCCGCCGCTGTGCTTAAAC------------- 640
                      *    * *    ** * *** ** *  * *  * *** **    **              

consensus_3253#0      AAAATAAAAGAATAAAACGAAACAATCTTCC 1166
consensus_3253#1      -------------------------------