cluster # 3264

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Anopheles gambiae
cluster # 3264 cluster # 3264 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3264#0 length = 619 sequences # 2

consensus_3264#1 length = 578 sequences # 1

consensusID : consensus_3264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [CCGGGAGCGGACAGGAAGGCTCGCCAGGCCAGCCCCTTCTAGCCCTGCCAATTACGGTCCCTTCCACCCCATCCTACTTCTCCGCCACATCATCGAGCAACAAACGCCTCCCCCCAAGAGCCACGATCAAAACCGCTCGCCCTCAAACACGTAGAAAGGAAACCGTTGCAGCAGCCTCGTCGAACAAAACTCACATCAACAATCAATCGCAGGAGCAAGGTCCTGCGGGCGTGTGCACGGGAAAGGAGGGAAGCGTCGTAACAACGGGCAGCAAGGCAATCCGTCGGCAGCGGGCTCAGTGGTTCGGCAGCGGGTAAAAAAAGGCACCCCCGCACGGTCGTAGGAAAAAGGACATGAAAGTACAAAGGCAGCGCGCAGTTTGCCGTACGTGTGTATTTGAAAATTAAAAAGGCAAGAAAAGGAAACGTCCACACCAGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGGCAAGCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCAC---CGAGCGACCAATGCCATCGTCGACAGAGATCTTTGACTCGCAATTTAGTACAACGTCAAGCTTTTTTAGTACAAATTATTTCT]

[+] EMBL BM586181             [CCGGGAGCGGACAGGAAGGCTCGCCAGGCCAGCCCCTTCTAGCCCTGCCAATTACGGTCCCTTCCACCCCATCCTACTTCTCCGCCACATCATCGAGCAACAAACGCCTCCCCCCAAGAGCCACGATCAAAACCGCTCGCCCTCAAACACGTAGAAAGGAAACCGTTGCAGCAGCCTCGTCGAACAAAACTCACATCAACAATCAATCGCAGGAGCAAGGTCCTGCGGGCGTGTGCACGGGAAAGGAGGGAAGCGTCGTAACAACGGGCAGCAAGGCAATCCGTCGGCAGCGGGCTCAGTGGTTCGGCAGCGGGTAAAAAAAGGCACCCCCGCACGGTCGTAGGAAAAAGGACATGAAAGTACAAAGGCAGCGCGCAGTTTGCCGTACGTGTGTATTTGAAAATTAAAAAGGCAAGAAAAGGAAACGTCCACACCAGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGGCAAGCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCAC   CGAGCGACCAATGCCATCGTCGACAGAGATCTTTGACTCGCAATTTAGTACAACGTCAAGCTTTTTTAGTACAAATTATTTCT]
[+] EMBL BM593905             [CCGGGAGCGGACAGGAAGGCTCGCCAGGCCAGCCCCTTCTAGCCCTGCCAATTACGGTCCCTTCCACCCCATCCTACTTCTCCGCCACATCATCGAGCAACAAACGCCTCCCCCCAAGAGCCACGATCAAAACCGCTCGCCCTCAAACACGTAGAAAGGAAACCGTTGCAGCAGCCTCGTCGAACAAAACTCACATCAACAATCAATCGCAGGAGCAAGGTCCTGCGGGCGTGTGCACGGGAAAGGAGGGAAGCGTCGTAACAACGGGCAGCAAGGCAATCCGTCGGCAGCGGGCTCAGTGGTTCGGCAGCGGGTAAAAAAAGGCACCCCCGCACGGTCGTAGGAAAAAGGACATGAAAGTACAAAGGCAGCGCGCAGTTTGCCGTACGTGTGTATTTGAAAATTAAAAAGGCAAGAAAAGGAAACGTCCACACCAGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGGCAAGCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCACACTCAAACCACCCA CCCATCcacaacgg                                                         ]




>consensus_3264#0
CCGGGAGCGGACAGGAAGGCTCGCCAGGCCAGCCCCTTCTAGCCCTGCCAATTACGGTCC
CTTCCACCCCATCCTACTTCTCCGCCACATCATCGAGCAACAAACGCCTCCCCCCAAGAG
CCACGATCAAAACCGCTCGCCCTCAAACACGTAGAAAGGAAACCGTTGCAGCAGCCTCGT
CGAACAAAACTCACATCAACAATCAATCGCAGGAGCAAGGTCCTGCGGGCGTGTGCACGG
GAAAGGAGGGAAGCGTCGTAACAACGGGCAGCAAGGCAATCCGTCGGCAGCGGGCTCAGT
GGTTCGGCAGCGGGTAAAAAAAGGCACCCCCGCACGGTCGTAGGAAAAAGGACATGAAAG
TACAAAGGCAGCGCGCAGTTTGCCGTACGTGTGTATTTGAAAATTAAAAAGGCAAGAAAA
GGAAACGTCCACACCAGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGGCAA
GCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCACCGAG
CGACCAATGCCATCGTCGACAGAGATCTTTGACTCGCAATTTAGTACAACGTCAAGCTTT
TTTAGTACAAATTATTTCT

consensusID : consensus_3264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [AGGCAAGAATTCGGCACGATGGAGAAAATTAAAACGGCAGAANNAGGAAACGTCCACACCAGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGGCAAGCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCACACTCAAACCACCCACCCATCCACAACGGCGGCGGCAACACTGACGACGAGGCGGATGGTGGGCGTGGTGGTGAAGGAGAAGGGCAGCAGCGGCAGCAGCAGCACCGGCTCGACCATGTCGCGCAGCGTGCGGGCGGAGACGCGCGCGAGCAAGAAGGATGACGTGAAGAAGCTGATGCTGTCGATGGACCGCGTCCGGCACTGGGAGAAGAAGTGGGTCACGATCGGGGAGACGTCGATGAAGATCTACAAATGGGTGCCGATCTCGACCAACGACAAGAAGAAACCGGCGGCGGCTGGCGGTGGAGTTGGCACTGGGGCTGCCGCGATTGGTGGGCCGCCCGGGTCAGACCGGCGGCTCGACGGCGACGGTACCCGGGCACCGGCAAAACCGGNCGAATCGAACGGAGCGCCCGGT]

[+] EMBL BX467958             [AGGCAAGAATTCGGCACGATGGAGAAAATTAAAACGGCAGAANNAGGAAACGTCCACACCAGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGGCAAGCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCACACTCAAACCACCCACCCATCCACAACGGCGGCGGCAACACTGACGACGAGGCGGATGGTGGGCGTGGTGGTGAAGGAGAAGGGCAGCAGCGGCAGCAGCAGCACCGGCTCGACCATGTCGCGCAGCGTGCGGGCGGAGACGCGCGCGAGCAAGAAGGATGACGTGAAGAAGCTGATGCTGTCGATGGACCGCGTCCGGCACTGGGAGAAGAAGTGGGTCACGATCGGGGAGACGTCGATGAAGATCTACAAATGGGTGCCGATCTCGACCAACGACAAGAAGAAACCGGCGGCGGCTGGCGGTGGAGTTGGCACTGGGGCTGCCGCGATTGGTGGGCCGCCCGGGTCAGACCGGCGGCTCGACGGCGACGGTACCCGGGCACCGGCAAAACCGGNCGAATCGAACGGAGCGCCCGGT]




>consensus_3264#1
AGGCAAGAATTCGGCACGATGGAGAAAATTAAAACGGCAGAANNAGGAAACGTCCACACC
AGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGGCAAGCGAGCACAGTGTGT
CGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCACACTCAAACCACCCACCCAT
CCACAACGGCGGCGGCAACACTGACGACGAGGCGGATGGTGGGCGTGGTGGTGAAGGAGA
AGGGCAGCAGCGGCAGCAGCAGCACCGGCTCGACCATGTCGCGCAGCGTGCGGGCGGAGA
CGCGCGCGAGCAAGAAGGATGACGTGAAGAAGCTGATGCTGTCGATGGACCGCGTCCGGC
ACTGGGAGAAGAAGTGGGTCACGATCGGGGAGACGTCGATGAAGATCTACAAATGGGTGC
CGATCTCGACCAACGACAAGAAGAAACCGGCGGCGGCTGGCGGTGGAGTTGGCACTGGGG
CTGCCGCGATTGGTGGGCCGCCCGGGTCAGACCGGCGGCTCGACGGCGACGGTACCCGGG
CACCGGCAAAACCGGNCGAATCGAACGGAGCGCCCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3264#0      CCGGGAGCGGACAGGAAGGCTCGCCAGGCCAGCCCCTTCTAGCCCTGCCAATTACGGTCC 60
consensus_3264#1      --------AGGCAAGAA--TTCGGCACGATGGAGAAAATTAAAACGGCAGAANNAGGAAA 50
                               * ** ***   *** ** *   *       **   * **  *    **   

consensus_3264#0      CTTCCACCCCATCCTACTTCTCCGCCACATCATCGAGCAACAAACGCCTCCCCCCAAGAG 120
consensus_3264#1      CGTCCACACCAGTAAG-------AAGGGGTAAAAGTGCA-CGAAAGTCACACGCAGAAGG 102
                      * ***** ***                  * *  * *** * ** * * * * *  *  *

consensus_3264#0      CCA-CGATCAAAAC-CGCTCGCCCTCAAACACGTAGAAAGGAAACCGTTGCAGCAGCCTC 178
consensus_3264#1      CAAGCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCACA 162
                      * * *** ** *    *   * ** ****  *  * *** *****     **  * *   

consensus_3264#0      GTCGAACAAAACTCACATCAACAATCAATCGCAGGAGCAAGGTCCTGCGGGCGTGTGCAC 238
consensus_3264#1      CTCAAACCACCCACCCATCCACAA-CGGCGGCGGCAACACTGACGACGAGGCGGATGGTG 221
                       ** *** *  * * **** **** *    ** * * **  * *     ****  **   

consensus_3264#0      GGGAAAGGAGGGAAGCGTCGTAACAACGGGCAGCAAGGCAATCCGTCGGCAGCGGGCTCA 298
consensus_3264#1      GGCGTGGTGGTGAAG-------GAGAAGGGCAGCAGCGGCAGCAG-CAGCACCGGCTCGA 273
                      **    *  * ****          * ********  *  * * * * *** ***    *

consensus_3264#0      GTGGTTCG-GCAGCGGGTAAAAAAAGGCACCCCCGCACGGTCGTAGGAAAAAGGACATGA 357
consensus_3264#1      CCATGTCGCGCAGCGTGCGGGCGGAGACGC----GCGCGA--GCAAGAAGGATGACGTGA 327
                           *** ****** *       ** * *    ** **   * * ***  * *** ***

consensus_3264#0      AAGTACAAAGGCAGCGCGCAGTTTGCCGTACGTGTGTATTTGAAAATTAAAAAGGCAAGA 417
consensus_3264#1      AGAAGCTGATGCTGT---CGATGGACCGCGTCCG-GCACTGGGAGAAGAAGTGGGTCACG 383
                      *    *  * ** *    *  *   ***     * * * * * * *  **   **  *  

consensus_3264#0      AAAGGAAACGTCCACACCAGTAAGAAGGGGTAAAAGTGCACGAAAGTCACACGCAGAAGG 477
consensus_3264#1      ATCGGGGA----GACGTCGATGAAGATCTACAAATGGGTGCCGATCTCGACCAACGACAA 439
                      *  **  *     **  *  * *  *     *** * *  *  *  **   *   **   

consensus_3264#0      CAAGCGAGCACAGTGTGTCGGACCACAAAACCACAAAAAAGAAACAAAACCACAACCACC 537
consensus_3264#1      GAAGAAACCGGCG-GCGGCTGGCGGTGGAGTTGGCACTGGGGCT----GCCGCGATTGGT 494
                       ***  * *   * * * * * *     *      *    *        ** * *     

consensus_3264#0      GAGCGACCAATGCCA--TCGTCGACA-GAGATCTTTGACTCGCAATTTAGTACAACGTCA 594
consensus_3264#1      GGGCCGCCCGGGTCAGACCGGCGGCTCGACGGCGACGGTACCCGGGCACCGGCAAAACCG 554
                      * **  **   * **   ** ** *  **   *   *   * *         ***   * 

consensus_3264#0      AGCTTTTTTAGTACAAATTATTTCT 619
consensus_3264#1      GNCGAATCGAACGGAGCGCCCGGT- 578
                        *   *  *    *