cluster # 3271

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Anopheles gambiae
cluster # 3271 cluster # 3271 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3271#0 length = 736 sequences # 2

consensus_3271#1 length = 657 sequences # 1

consensusID : consensus_3271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 736
fasta sequence

                              [GACCCACGCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGTAAACAA-GATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACATGTTAAAACAACAACACTCCAACCCGTAAATGTCACCAACTTAACAAGCGTTGAACCGGTTTACTTCTCAAAGTACTTCTTGAACTCCTCAATGCCAGCCTGGTTAATCGCGGCGCCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAGTCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAAATGGACAGGGCGGCAATCGTGAGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGCTGTTCAAAAAGCCGACCGCATCCTTCATCTTCTGTTCATTTTCTGGATTGGCCGGCTGCTTGGCGAAGATTTGAGGATAGTAATAGTCTGCGAAGGCTGGTATAGAGTGCCCATGTCGAAGTACATTCGCTGGTTTACTACGGCACGCTTCTGCGGGTCCTTGGGGTACAGCTTGTCGTCCTTGCCGTACTTCTCCGCCAGAAAAGTACAGATAGCGCGGGACTCCCACAGGGCGAATCCATTGTCGACCAGCGTTGGAATGCAGTTTTGTGGGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTCAATGTTTCCAGTAGGCCAAAAGTCCTCGAG]

[+] EMBL BM649179             [GACCCACGCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGTAAACAA GATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACATGTTAAAACAACAACACTCCAACCCGTAAATGTCACCAACTTAACAAGCGTTGAACCGGTTTACTTCTCAAAGTACTTCTTGAACTCCTCAATGCCAGCCTGGTTAATCGCGGCGCCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAGTCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAAATGGACAGGGCGGCAATCGTGAGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGCTGTTCAAAAAGCCGACCGCATCCTTCATCTTCTG                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CNS08ZU9             [                                                    TTTTTGGTGTTAAACAATGATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACATGTTAAAACAACAACACTCCAACCCGTAGATGTCACCAACTTAACAAGCGTTGAACCGGTTTACTTCTCAAAGTACTTCTTGAACTCCTCAATGCCAGCCTGGTTAATCGCGGCGCCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAGTCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAGATGGACAGGTCGGCAATCGTGAGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGGTGTTCAGAAAGTCAACTGCATCCTTCATCTTCTGTTCATTTTCTGGATTGGCCGGCTGCTTGGCGAAGATTTGAGGATAGTAATAGTCTGCGAAGGCTGGTATAGAGTGCCCATGTCGAAGTACATTCGCTGGTTTACTACGGCACGCTTCTGCGGGTCCTTGGGGTACAGCTTGTCGTCCTTGCCGTACTTCTCCGCCAGAAAAGTACAGATAGCGCGGGACTCCCACAGGGCGAATCCATTGTCGACCAGCGTTGGAATGCAGTTTTGTGGGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTCAATGTTTCCAGTAGGCCAAAAGTCCTCGAG]




>consensus_3271#0
GACCCACGCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG
GGTAAACAAGATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACATGTTA
AAACAACAACACTCCAACCCGTAAATGTCACCAACTTAACAAGCGTTGAACCGGTTTACT
TCTCAAAGTACTTCTTGAACTCCTCAATGCCAGCCTGGTTAATCGCGGCGCCGGGCGCTT
CCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAGTCGAACCCGG
CTACATCGTACGTCGAGATTGTGGCCAAAATGGACAGGGCGGCAATCGTGAGACTATCAC
CTGCCACGTACTTGTGCCCGTCCAGGAAGCTGTTCAAAAAGCCGACCGCATCCTTCATCT
TCTGTTCATTTTCTGGATTGGCCGGCTGCTTGGCGAAGATTTGAGGATAGTAATAGTCTG
CGAAGGCTGGTATAGAGTGCCCATGTCGAAGTACATTCGCTGGTTTACTACGGCACGCTT
CTGCGGGTCCTTGGGGTACAGCTTGTCGTCCTTGCCGTACTTCTCCGCCAGAAAAGTACA
GATAGCGCGGGACTCCCACAGGGCGAATCCATTGTCGACCAGCGTTGGAATGCAGTTTTG
TGGGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTCAATGTTTCCAGTAG
GCCAAAAGTCCTCGAG

consensusID : consensus_3271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGTTTGTGCCCGGTTCGTTTGTCCTGGTTCGCTTTTTCATCGTTTTGTGCAAGTTAATACTGCAAAAGGGTGCAACACTAAACAAAAACGCCCCCATGGCGAAGGCACGCGAAATGTATCTGGCGCTGTGCCTGCTGGACGCAATCGAGGATGCGAACATAGAAGCCCTGCAGCTGGTGCTGGACAAGTACGGTGCGAGCCCAAACACAATCTTCCCGGAAAAGGGCGTCGCACCGATGCATCTGGTCATTGGTGCGGACGACGAGACGTTTGCGCTGCGGGCCACCTCGCTGATGCTGCAGCGAGGCGGCAGCGCTAACCTGCCAGCGGCCGAACAGATGCTCACGCCGCTCCACGTAGCGGCCAATCTCGGACGGGTCGCGATCGTGCGGCTGCTGCTGAAGGCGGGCGGAAATGTGGAGCTGCTGGACGAGGAAGACCGTACGCCGATCCAGCACGCCATCGATGGCGATCACTTCGAGGTGGTGCAGGTCATACAGAACCACGTCTTCGAGCAAAAGATCGACCAGAAGCGCAAGCAGCTAATCAAGCAGCAGCAGCAGGAACAACAACAAACCGTTCTGTCCCCCAGCATGCGGTTCAAGAAGAGTGTGG]

[+] EMBL BM600110             [CGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGTTTGTGCCCGGTTCGTTTGTCCTGGTTCGCTTTTTCATCGTTTTGTGCAAGTTAATACTGCAAAAGGGTGCAACACTAAACAAAAACGCCCCCATGGCGAAGGCACGCGAAATGTATCTGGCGCTGTGCCTGCTGGACGCAATCGAGGATGCGAACATAGAAGCCCTGCAGCTGGTGCTGGACAAGTACGGTGCGAGCCCAAACACAATCTTCCCGGAAAAGGGCGTCGCACCGATGCATCTGGTCATTGGTGCGGACGACGAGACGTTTGCGCTGCGGGCCACCTCGCTGATGCTGCAGCGAGGCGGCAGCGCTAACCTGCCAGCGGCCGAACAGATGCTCACGCCGCTCCACGTAGCGGCCAATCTCGGACGGGTCGCGATCGTGCGGCTGCTGCTGAAGGCGGGCGGAAATGTGGAGCTGCTGGACGAGGAAGACCGTACGCCGATCCAGCACGCCATCGATGGCGATCACTTCGAGGTGGTGCAGGTCATACAGAACCACGTCTTCGAGCAAAAGATCGACCAGAAGCGCAAGCAGCTAATCAAGCAGCAGCAGCAGGAACAACAACAAACCGTTCTGTCCCCCAGCATGCGGTTCAAGAAGAGTGTGG]




>consensus_3271#1
CGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGTTTGTGCCCGGTTCGT
TTGTCCTGGTTCGCTTTTTCATCGTTTTGTGCAAGTTAATACTGCAAAAGGGTGCAACAC
TAAACAAAAACGCCCCCATGGCGAAGGCACGCGAAATGTATCTGGCGCTGTGCCTGCTGG
ACGCAATCGAGGATGCGAACATAGAAGCCCTGCAGCTGGTGCTGGACAAGTACGGTGCGA
GCCCAAACACAATCTTCCCGGAAAAGGGCGTCGCACCGATGCATCTGGTCATTGGTGCGG
ACGACGAGACGTTTGCGCTGCGGGCCACCTCGCTGATGCTGCAGCGAGGCGGCAGCGCTA
ACCTGCCAGCGGCCGAACAGATGCTCACGCCGCTCCACGTAGCGGCCAATCTCGGACGGG
TCGCGATCGTGCGGCTGCTGCTGAAGGCGGGCGGAAATGTGGAGCTGCTGGACGAGGAAG
ACCGTACGCCGATCCAGCACGCCATCGATGGCGATCACTTCGAGGTGGTGCAGGTCATAC
AGAACCACGTCTTCGAGCAAAAGATCGACCAGAAGCGCAAGCAGCTAATCAAGCAGCAGC
AGCAGGAACAACAACAAACCGTTCTGTCCCCCAGCATGCGGTTCAAGAAGAGTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3271#0      ----GACCCACGCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56
consensus_3271#1      CGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGTTTGTGCCCGGTTCGT 60
                            *************  ******  *        *   * *** *      **  *

consensus_3271#0      TGGGGGTAAACAAGATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACAT 116
consensus_3271#1      TTGTCCTGGTTC-GCTTTTTCATCGTTTTGTGCAAGTTAATACTGCAA--AAGGGTGCAA 117
                      * *   *      * *     ***     *    * **   * *   *       * ** 

consensus_3271#0      GTTAAAACAACAACACTCCAACCCGTAAATGTCACCAACT-TAACAAGCGTTGAACCGGT 175
consensus_3271#1      CACTAAACAAAAACGCCCCCATGGCGAAGGCACGCGAAATGTATCTGGCGCTGTGCCTGC 177
                          ****** *** * ** *     **    * * ** * ** *  *** **  ** * 

consensus_3271#0      T---TACTTCTCAAAGTACTT-CTTGAACTCCTCAATGCCAGC-CTGGTTAATCGCGGCG 230
consensus_3271#1      TGGACGCAATCGAGGATGCGAACATAGAAGCCCTGCAGCTGGTGCTGGACAAGTACGGTG 237
                      *     *     *   * *   * *  *  **     **  *  ****  **   *** *

consensus_3271#0      CCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAG 290
consensus_3271#1      C---GAGCCCAAACAC-AATCTTCCCGGAAAAGGGCGTCGCACCGATGCATCTGGTCA-- 291
                      *   * **       * *** **  ** *  * *  *   *      * *  *** **  

consensus_3271#0      TCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAAATGGACAGGGCGGCAATCGTG 350
consensus_3271#1      TTGGTGCGGACGACG--AGACGTTTGCGCTGCGGGCCACCTCGCTGATGCTGCA---GCG 346
                      * *   * * * **     ****      ** ** * *  * *     ** ***   * *

consensus_3271#0      AGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGCTGTTCAAAAAGCCGACCGCA 410
consensus_3271#1      AGGCGGCAGC--GCTA---ACCTGCCAGCGGCCGAACAGATGCTCACGCCGCTCCACGTA 401
                      ** *     *  ** *   ** **    ** **    ** ** ***    **    ** *

consensus_3271#0      TCCTTCATCTTCTGTTCATTTTCTGGATTGGCCGGCTGCTTGGCGAAGATTTGAGGATAG 470
consensus_3271#1      GCGGCCAATCTCGGACGGGTCGC--GATCGTGCGGCTGCT-GCTGAAGGCGGGCGGA-AA 457
                       *   **   ** *     *  *  *** *  ******** *  ****    * *** * 

consensus_3271#0      TAATAGTCTGCGAAGGCTGGTATAGAGTGCCCATGTCGAA-GTACATTCGCTGGTTTACT 529
consensus_3271#1      TGTGGAGCTGCTGGACGAGGAAGACCGTACGCCGATCCAGCACGCCATCGATGGCG-ATC 516
                      *      ****       ** * *  ** * *   ** *     *  *** ***   *  

consensus_3271#0      ACGGCACGCTTCTGCGGGTCCTTGGGGTACAGCTTGTCGTCCTTGCCGTACTTCTCCGCC 589
consensus_3271#1      ACTTCGAGGTGGTGCAGGTC------ATACAGAACCACGTCTTCGAGCAAAAGATCGACC 570
                      **  *  * *  *** ****       *****     **** * *    *    **  **

consensus_3271#0      AGAAAAGTACAGATAGCGCGGGACTCCCACAGGGCGAATCCATTGTCGACCAGCGTTGGA 649
consensus_3271#1      AGAAGCGCAAGCAGCTAATCAAGCAGCAGCAGCAGGAA--CAACAACAAACCGTTCTGTC 628
                      ****  * *   *          *  *  ***   ***  **    * * * *   **  

consensus_3271#0      ATGCAGTTTTGTGGGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTCAAT 709
consensus_3271#1      CCCCAGCAT-GCGGTTCAAGAAGAGTGTGG------------------------------ 657
                         ***  * * ** * **      * *                                

consensus_3271#0      GTTTCCAGTAGGCCAAAAGTCCTCGAG 736
consensus_3271#1      ---------------------------