cluster # 3306

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Anopheles gambiae
cluster # 3306 cluster # 3306 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3306#0 length = 867 sequences # 2

consensus_3306#1 length = 225 sequences # 1

consensusID : consensus_3306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 867
fasta sequence

                              [CCGCCGCGTACGACGTGCACACACACCGGGTCGAAGTTAACGGAAACGTCGGACTGGTCTCGCGCGCAAAAAAAAAGCCAGCCAGCCAGCCAGCATCACAAATATATTTTTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAACCAAAAAAAAACAACGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAATAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGTTTACAGTTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGGATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCGTTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATCGCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAAAACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACCCCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAGTCCGTTGAATGCAAGAGCAAAAAAAAAACTACCTACCTTTTATCAGCTCATTGCAACTGCAAGCGAACAACTTCTATTGCTAATTAACTACAACAACAACAACAACAACTACTACTACTACTAGCCTACTAATACCGCTACTACTACTACGGCGTGATACGAA]

[+] EMBL BM624775             [CCGCCGCGTACGACGTGCACACACACCGGGTCGAAGTTAACGGAAACGTCGGACTGGTCTCGCGCGCAAAAAAAAAGCCAGCCAGCCAGCCAGCATCACAAATATATTTTTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAACCAAAAAAAAACAACGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAATAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGTTTACAGTTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGGATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCGTTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATCGCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAAAACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACCCCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAGTCC                                                                                                                                                                ]
[+] EMBL BX628918             [                                                                                                                                                                                                         GGAACAAAACCAAAAAAAAACAACGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAATAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGNTTACAGTTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGGATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCGTTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATCGCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAAAACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACCCCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAGTCCGTTGAATGCAAGAGCAAAAAAAAAACTACCTACCTTTTATCAGCTCATTGCAACTGCAAGCGAACAACTTCTATTGCTAATTAACTACAACAACAACAACAACAACTACTACTACTACTAGCCTACTAATACCGCTACTACTACTACGGCGTGATACGAA]




>consensus_3306#0
CCGCCGCGTACGACGTGCACACACACCGGGTCGAAGTTAACGGAAACGTCGGACTGGTCT
CGCGCGCAAAAAAAAAGCCAGCCAGCCAGCCAGCATCACAAATATATTTTTTTCCGTTGC
GTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAA
CACGCAAAACAGTGCGCGCGCGGAACAAAACCAAAAAAAAACAACGAAAATTGTGTCTAA
GTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAATAATTCGCGTTGACAC
TAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGTTTACAGTTTCTGCAAAGGGCTT
CGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGGATCCCCGACGGGAAAA
TAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCGTTTTCCGGCGAGGCGG
AGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATCGCACGTTTCCTAGCAA
CCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAAAACAAAAAATACGAGA
GAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACCCCGAAAACGGCTCCCA
ATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAGTCCGTTGAATGCAAGA
GCAAAAAAAAAACTACCTACCTTTTATCAGCTCATTGCAACTGCAAGCGAACAACTTCTA
TTGCTAATTAACTACAACAACAACAACAACAACTACTACTACTACTAGCCTACTAATACC
GCTACTACTACTACGGCGTGATACGAA

consensusID : consensus_3306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [CCGCCGTGTACTGTTGTTCGTGTTGTTCGGTGCAACAATAAAAAAATATACAGAATCGCGCGCGCGTCCTCCCTTCGAACGTTCTGTTGTTTTTTTTTGGGACCGTGTTTGCCGTCGCCGCCCGCTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAA]

[+] EMBL BM624980             [CCGCCGTGTACTGTTGTTCGTGTTGTTCGGTGCAACAATAAAAAAATATACAGAATCGCGCGCGCGTCCTCCCTTCGAACGTTCTGTTGTTTTTTTTTGGGACCGTGTTTGCCGTCGCCGCCCGCTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAA]




>consensus_3306#1
CCGCCGTGTACTGTTGTTCGTGTTGTTCGGTGCAACAATAAAAAAATATACAGAATCGCG
CGCGCGTCCTCCCTTCGAACGTTCTGTTGTTTTTTTTTGGGACCGTGTTTGCCGTCGCCG
CCCGCTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAA
ACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3306#0      CCGCCGCGTAC-GACGTGCACACACACCGGGTCGAAGTTAACGGAA-ACGTCGGACTGGT 58
consensus_3306#1      CCGCCGTGTACTGTTGTTCGTGTTGTTCGGTGCAACAATAAAAAAATATACAGAATCGCG 60
                      ****** **** *  ** *        ***  * *   ***   ** *    * *  *  

consensus_3306#0      CTCGCGCGCAAAAAAAAAGCCAGCCAGCCAGCCAGCATCACAAATATATTT--------- 109
consensus_3306#1      CGCGCGTCCTCCCTTCGAAC-GTTCTGTTGTTTTTTTTTGGGACCGTGTTTGCCGTCGCC 119
                      * ****  *        * *    * *          *    *   * ***         

consensus_3306#0      -----TTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAA 164
consensus_3306#1      GCCCGCTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAA 179
                            ******************************************************

consensus_3306#0      AACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAACCAAAAAAAAACAA 224
consensus_3306#1      AACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAA-------------- 225
                      **********************************************              

consensus_3306#0      CGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAA 284
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      TAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGTTTACAG 344
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      TTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGG 404
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      ATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCG 464
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      TTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATC 524
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      GCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAA 584
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      AACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACC 644
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      CCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAG 704
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      TCCGTTGAATGCAAGAGCAAAAAAAAAACTACCTACCTTTTATCAGCTCATTGCAACTGC 764
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      AAGCGAACAACTTCTATTGCTAATTAACTACAACAACAACAACAACAACTACTACTACTA 824
consensus_3306#1      ------------------------------------------------------------
                                                                                  

consensus_3306#0      CTAGCCTACTAATACCGCTACTACTACTACGGCGTGATACGAA 867
consensus_3306#1      -------------------------------------------