cluster # 3331

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3331 cluster # 3331 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3331#0 length = 735 sequences # 2

consensus_3331#1 length = 692 sequences # 1

consensusID : consensus_3331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 735
fasta sequence

                              [ATGGAAGGGTCTCAGTATCNTAACGAAAGTTCTAACGACGACGTCGTGGAGCACAGTGAAGAGATTGTGATTGGTGAC-AAGTGTTACGTTTGTTTCTTCAAATATGGATTTGGCTAGGGAAGAATCTGGAGATGATGAGCGGCTGGACAGCCCACGAGGATTCGGAAGCGGAGACTTCGGAACCAGCGACCTTGACGACGATGACATCGAAGTATCCGGCGATTCCGGAGAACCTGAGGGAACATTGGAAGATAGTCAACATGATAGTGTCCGAGATGAGTTTCCGGGAGAGCGTAACCATTTCAAAAGAGGACTTGAACTCCTTGCTAGTAGACCTGATTGCAAATACCGGTATTACCATGCCGGTATTTTCCAAGTTTACCGACGTTAATGGACCTAAAGAACTACTTGCACTCCCTCAAAAAGGCGAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAAACCACCCTGCATGTCGTCCACGACTGCCGCATATNNCCAACAGTTTCGTGCAANGTGTTTTCAGNCCTTAAACCCTANNTGGGAAGAAANGTCTCGGGCGTGGTCAATTAAGAGAGTTAGCTCAAAATGANAANGANTGGTCATCATCCGAAATTAGGGAAGANATAGAATNATGTAAAAAATAAAANANAANGATTGAANAANNGAGAAATAAAAAAGATNCACTGCCTAACAANNNAAAGGCNGTTTTAGANTNAAAAAAAAAA]

[+] EMBL CF541823             [ATGGAAGGGTCTCAGTATCNTAACGAAAGTTCTAACGACGACGTCGTGGAGCACAGTGAAGAGATTGTGATTGGTGAC AAGTGTTACGTTTGTTTCTTCAAATATGGATTTGGCTAGGGAAGAATCTGGAGATGATGAGCGGCTGGACAGCCCACGAGGATTCGGAAGCGGAGACTTCGGAACCAGCGACCTTGACGACGATGACATCGAAGTATCCGGCGATTCCGGAGAACCTGAGGGAACATTGGAAGATAGTCAACATGATAGTGTCCGAGATGAGTTTCCGGGAGAGCGTAACCATTTCAAAAGAGGACTTGAACTCCTTGCTAGTAGACCTGATTGCAAATACCGGTATTACCATGCCGGTATTTTCCAAGTTTACCGACGTTAATGGACCTAAAGAACTACTTGCACTCCCTCAAAAAGGCGAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAAACCACCCTGCATGTCGTCCACGACTGCCGCATATNNCCAACAGTTTCGTGCAANGTGTTTTCAGNCCTTAAACCCTANNTGGGAAGAAANGTCTCGGGCGTGGTCAATTAAGAGAGTTAGCTCAAAATGANAANGANTGGTCATCATCCGAAATTAGGGAAGANATAGAATNATGTAAAAAATAAAANANAANGATTGAANAANNGAGAAATAAAAAAGATNCACTGCCTAACAANNNAAAGGCNGTTTTAGANTNAAAAAAAAAA]
[+] EMBL BX624966             [               TATCATAACGAAAGTTCTAACGACGACGTCGTGGAGCACAGTGAAGAGATTGTGATTAGTGACAAAGTGTTACGTTTGTTTCTTCAAATATGGATTTGGCTAGGGAAGAATCTGGAGATGATGAGCGGCTGGACAGCCCACGAGGATTCGGAAGCGGAGACTTCGGAACCAGCGACCTTGACGACGATGACATCGAAGTATCCGGCGATTCCGGAGAACCTGAGGGAACATTGGAAGATAGTCAACATGATAGTGTCCGAGATGAGTTTCCGGGAGAGCGTAACCATTTCAAAAGAGGACTTGAACTCCTTGCTAGTAGACCTGATTGCAAATACCGGTATTACCATGCCGGTATTTT CAAGTTTACCGACGTTAATGGACCTAAAGAACTACTTGCACT CCTCAAAAAGGCGAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAAACCA CCTGCATGTCGTCCACGACTG CGCATAT TCCAACAG TTCGTGC AGGTG TTTCAG CCTTAAACCtact                                                                                                                                                                                            ]




>consensus_3331#0
ATGGAAGGGTCTCAGTATCNTAACGAAAGTTCTAACGACGACGTCGTGGAGCACAGTGAA
GAGATTGTGATTGGTGACAAGTGTTACGTTTGTTTCTTCAAATATGGATTTGGCTAGGGA
AGAATCTGGAGATGATGAGCGGCTGGACAGCCCACGAGGATTCGGAAGCGGAGACTTCGG
AACCAGCGACCTTGACGACGATGACATCGAAGTATCCGGCGATTCCGGAGAACCTGAGGG
AACATTGGAAGATAGTCAACATGATAGTGTCCGAGATGAGTTTCCGGGAGAGCGTAACCA
TTTCAAAAGAGGACTTGAACTCCTTGCTAGTAGACCTGATTGCAAATACCGGTATTACCA
TGCCGGTATTTTCCAAGTTTACCGACGTTAATGGACCTAAAGAACTACTTGCACTCCCTC
AAAAAGGCGAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAAACCACCCTGCA
TGTCGTCCACGACTGCCGCATATNNCCAACAGTTTCGTGCAANGTGTTTTCAGNCCTTAA
ACCCTANNTGGGAAGAAANGTCTCGGGCGTGGTCAATTAAGAGAGTTAGCTCAAAATGAN
AANGANTGGTCATCATCCGAAATTAGGGAAGANATAGAATNATGTAAAAAATAAAANANA
ANGATTGAANAANNGAGAAATAAAAAAGATNCACTGCCTAACAANNNAAAGGCNGTTTTA
GANTNAAAAAAAAAA

consensusID : consensus_3331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [GAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAANCCACCTGCATGTCGTCCACGACTGCGCATATTCCAACAGTTCGTGCAGGTGTTTCAGCCTTAAACCTACTGGAAGAAAGTCTCGGCGTCGTCAATTCAGAGAGTCAGCTCAAAATGAAAAAGAATTGTCATCATCCGAAATTAGGGAAGAAATAGAATTATGTAAAAAATAAAAATAGAAAGATAGAAGAAAGGAGAAATAAAAAAGATACACTGCCTAACAAACTAGAGCAGTCTAAATCAATTTATAAAAATATAACTGACAAATTGGCAATTTATGAGCATGCGATTTCAAGCGAAGAAATAAGATTTTTCCTTAACTGCTCAAGGAATATTTTTGGAGAAATCTACACACTCATAGCAACAAAATTAGAACTAGCTCATCAACACAAAATTAGTTTGCCAGTTATTGTATATGCATTAAAATTCACACGAAAATTGAAGGAGAAAATTAATACCGCGAAGATGGTCAATGTAGACATTAAATTAGGAACAACCCTCATACCGATGTATGACGGATCCCCAGAAACACTGCATTCTTTCATCGACGCAACAGAACTATTTAATTCTATCACTAACGGTTAGGTACGGGTACGGTTAGGCAAATAGTAAATAATAACCAACACCTCTCCGAAATCATAACAACGCTCA]

[-] EMBL BX620158             [GAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAANCCACCTGCATGTCGTCCACGACTGCGCATATTCCAACAGTTCGTGCAGGTGTTTCAGCCTTAAACCTACTGGAAGAAAGTCTCGGCGTCGTCAATTCAGAGAGTCAGCTCAAAATGAAAAAGAATTGTCATCATCCGAAATTAGGGAAGAAATAGAATTATGTAAAAAATAAAAATAGAAAGATAGAAGAAAGGAGAAATAAAAAAGATACACTGCCTAACAAACTAGAGCAGTCTAAATCAATTTATAAAAATATAACTGACAAATTGGCAATTTATGAGCATGCGATTTCAAGCGAAGAAATAAGATTTTTCCTTAACTGCTCAAGGAATATTTTTGGAGAAATCTACACACTCATAGCAACAAAATTAGAACTAGCTCATCAACACAAAATTAGTTTGCCAGTTATTGTATATGCATTAAAATTCACACGAAAATTGAAGGAGAAAATTAATACCGCGAAGATGGTCAATGTAGACATTAAATTAGGAACAACCCTCATACCGATGTATGACGGATCCCCAGAAACACTGCATTCTTTCATCGACGCAACAGAACTATTTAATTCTATCACTAACGGTTAGGTACGGGTACGGTTAGGCAAATAGTAAATAATAACCAACACCTCTCCGAAATCATAACAACGCTCA]




>consensus_3331#1
GAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAANCCACCTGCATGTCGTCCA
CGACTGCGCATATTCCAACAGTTCGTGCAGGTGTTTCAGCCTTAAACCTACTGGAAGAAA
GTCTCGGCGTCGTCAATTCAGAGAGTCAGCTCAAAATGAAAAAGAATTGTCATCATCCGA
AATTAGGGAAGAAATAGAATTATGTAAAAAATAAAAATAGAAAGATAGAAGAAAGGAGAA
ATAAAAAAGATACACTGCCTAACAAACTAGAGCAGTCTAAATCAATTTATAAAAATATAA
CTGACAAATTGGCAATTTATGAGCATGCGATTTCAAGCGAAGAAATAAGATTTTTCCTTA
ACTGCTCAAGGAATATTTTTGGAGAAATCTACACACTCATAGCAACAAAATTAGAACTAG
CTCATCAACACAAAATTAGTTTGCCAGTTATTGTATATGCATTAAAATTCACACGAAAAT
TGAAGGAGAAAATTAATACCGCGAAGATGGTCAATGTAGACATTAAATTAGGAACAACCC
TCATACCGATGTATGACGGATCCCCAGAAACACTGCATTCTTTCATCGACGCAACAGAAC
TATTTAATTCTATCACTAACGGTTAGGTACGGGTACGGTTAGGCAAATAGTAAATAATAA
CCAACACCTCTCCGAAATCATAACAACGCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3331#0      --ATGGAAGGGTCTCAGTATCNTAACGAAAGTTCTAACGACGACGTCGTGGAGCACAGTG 58
consensus_3331#1      GAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAANCCACC-TGCATGTCGTCC 59
                        ** **    *     * *  **      * ** *  **   *  * ** *   *    

consensus_3331#0      AAGAGATTGTGATTGGTGACAAGTGTTACGTTTGTTTCTTCAAATATGGATTTGGCTAGG 118
consensus_3331#1      ACGACTGCGCATATTCCAACAGTTCGTGCAGGTGTTTC----AGCCTTAAACCTACTGGA 115
                      * **    *    *    ***  *  * *   ******    *   *  *     ** * 

consensus_3331#0      GAAGAATCTGGAGATGATGAGCGGCTGGACAGCCCACGAGGATTCGGAAGCGGAGACTTC 178
consensus_3331#1      AGAAAGTCTCGGCGTCGTCAAT--TCAGAGAGTCAGCTCAAAAT--GAAAAAGAATTGTC 171
                        * * *** *   *  * *       ** ** *  *    * *  ***   **    **

consensus_3331#0      GGAACCAGCGACCTTGACGACGATGACATCGAAGTATCCGGCGATTCCGGAGAACCTGAG 238
consensus_3331#1      ATCATCCGAAATTAGG-----GAAGAAATAGAATTATGTAAAAAATAAAAATAGAAAGAT 226
                         * * *  *    *     ** ** ** *** ***      * *    * *    ** 

consensus_3331#0      GGAACATTGGAAGATAGTCAACATGATAGTGTCCGAGATGAGTTTCCGGGAGAGCGTAAC 298
consensus_3331#1      AGAAGAAAGGAGAA--ATAAAAAAGATACACTGCCTAACAAACTA--GAGCAGTCTAAAT 282
                       *** *  ***  *   * ** * ****   * *   *  *  *   * *    *  ** 

consensus_3331#0      CATTTCAAAAGAGGACT-TGAACTCCTTGCTAGTAGACCTGATTGCAAATACCGGTATTA 357
consensus_3331#1      CAATTTATAAAAATATAACTGACAAATTGGCAATTTATGAGCATGCGATTTCAAGCGAAG 342
                      ** ** * ** *  *      **   ***  * *  *   *  *** * * *  *     

consensus_3331#0      CCATGCCGGTATTTTCCAAGTTTACCGACGTTAATGGACCTAAAGAACTACTTGCACTCC 417
consensus_3331#1      AAATAA-GATTTTTCCTTAACTGCTCAAGG--AATATTTTTGGAGAA--ATCTACACACT 397
                        **   * * *** *  *  *   * * *  ***     *  ****  *  * *** * 

consensus_3331#0      CTCAAAAAGGCGAATCGAGACATACGTCTCTTGTATGTCTGGCTCGACAGAAACCACCC- 476
consensus_3331#1      CATAGCAACAAAATTAGAACTAGCTCATCAACACAAAATTAGTTTGCCAGTTATTGTATA 457
                      *  *  **    * * **   *            *    * * * * ***  *       

consensus_3331#0      TGCAT---GTCGTCCACGACTGCCGCATATNNCCAACAGTTTCGTGCAANGTGTTTTCAG 533
consensus_3331#1      TGCATTAAAATTCACACGAAAATTGAAGGAGAAAATTAATACCGCG-AAGATGGTC---- 512
                      *****         *****     * *       *  * *  ** * **  ** *     

consensus_3331#0      NCCTTAAACCCTANNTGGGAAGAAANGTCTCGGGCGTGGTCAATTAAGAGAGTTAGCTCA 593
consensus_3331#1      AATGTAGACATTAAATTAGGAACAAC-CCTCATAC-----CGATGTATGACGGATCCCCA 566
                          ** **  **  *  * *  **   ***   *     * **  *    *    * **

consensus_3331#0      AAATGANAANGANTGGTCATCATCCGAAATTAGGGAAGANATAGAATNATGTAAAAAATA 653
consensus_3331#1      GAAACACTGCATTCTTTCATCGACGCAACAGAACTATTTAATTCTATCAC-TAACGGTTA 625
                       **  *          *****  *  **   *   *    **   ** *  ***    **

consensus_3331#0      A--AANANAANGATTGAANAANNGAGAAATAAAAAAGATNCACTGCCTAACAANNNAAAG 711
consensus_3331#1      GGTACGGGTACGGTTAGGCAAATAGTAAATAATAACCAACACCTCTCCGAAATCATAACA 685
                         *     * * **    **     ****** **  *    **  *  * *    **  

consensus_3331#0      GCNGTTTTAGANTNAAAAAAAAAA 735
consensus_3331#1      ACGCTCA----------------- 692
                       *  *