cluster # 3332

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Anopheles gambiae
cluster # 3332 cluster # 3332 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3332#0 length = 954 sequences # 2

consensus_3332#1 length = 539 sequences # 1

consensusID : consensus_3332#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 954
fasta sequence

                              [CCGTCGTGATTGGGCACGAGCTAACGCACGGGTTCGACGACAAGGGCCGGCTGTTCGATCGGGACGGCAATCTGTACCGGTGGTGGAGTGATCGCGCGATCGAAGAGTTCCACGAGCGGGCGGCCTGCCTGGTGGAGCAGTACGGCAGGTACAGGATCGCCGAGGTCGACGTGCAGCTGGACGGGGAAAACACGCAGGGCGAAAACATTGCCGACAATGGGGGCATCAAGCAGGCGTTCCTGGCGTACAGCAAGTGGCTCGCGGCTCAGACGGATCGGCGCGTGCTCGAGGCGGAAACGCTGCCCGGGTTGAACGTGACGCGGACGCAGCTCTTCTTTCTCAACTTTGCCCAGATCTGGTGCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGGGCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACTGCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGTTAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGTTGCTGTAACGCTCGCTGACATTTGCATGGTACCCGGATCATCTGACCTGACCGGATCAGATGGCAATGGGAATAAAAACGTGTGGCGTACGACACTACTATGCGTGTTACGTTTCGATCGATCGTACTTGATGTGTTCTATGTGCATGCCATATCCCGTCGTCATTGATCGCAGCGGGGCTAGCGAGATGTGTCGTTGAATAAATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAACGACATATCTCCGCTACTTGCACGCTGCTTGTCAACATCCTAACCTCCCGCTGCAAGACACTAGTTAATTGAAATCAATTCCAAAACCCGTCCGAGAATCCCGCGCTCCGGTGA]

[+] EMBL BM635589             [CCGTCGTGATTGGGCACGAGCTAACGCACGGGTTCGACGACAAGGGCCGGCTGTTCGATCGGGACGGCAATCTGTACCGGTGGTGGAGTGATCGCGCGATCGAAGAGTTCCACGAGCGGGCGGCCTGCCTGGTGGAGCAGTACGGCAGGTACAGGATCGCCGAGGTCGACGTGCAGCTGGACGGGGAAAACACGCAGGGCGAAAACATTGCCGACAATGGGGGCATCAAGCAGGCGTTCCTGGCGTACAGCAAGTGGCTCGCGGCTCAGACGGATCGGCGCGTGCTCGAGGCGGAAACGCTGCCCGGGTTGAACGTGACGCGGACGCAGCTCTTCTTTCTCAACTTTGCCCAGATCTGGTGCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGGGCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACTGCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGTTAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGTTGCTGTAACGCTCGCTGACATTTGCATGGTACCCGGATCATCTGACCTGACCGGATC                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM623456             [                                                                                                                                                                                                                                                                           ccgCGGATCGGCGCGTGCTCGAGGCGGAAACGCTGCCCGGGTTGAACGTGACGCGGACGCAGCTCTTCTTTCTCAACTTTGCCCAGATCTGGTGCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGGGCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACTGCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGTTAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGTTGCTGTAACGCTCGCTGACATTTGCATGGTACCCGGATCATCTGACCTGACCGGATCAGATGGCAATGGGAATAAAAACGTGTGGCGTACGACACTACTATGCGTGTTACGTTTCGATCGATCGTACTTGATGTGTTCTATGTGCATGCCATATCCCGTCGTCATTGATCGCAGCGGGGCTAGCGAGATGTGTCGTTGAATAAATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAACGACATATCTCCGCTACTTGCACGCTGCTTGTCAACATCCTAACCTCCCGCTGCAAGACACTAGTTAATTGAAATCAATTCCAAAACCCGTCCGAGAATCCCGCGCTCCGGTGA]




>consensus_3332#0
CCGTCGTGATTGGGCACGAGCTAACGCACGGGTTCGACGACAAGGGCCGGCTGTTCGATC
GGGACGGCAATCTGTACCGGTGGTGGAGTGATCGCGCGATCGAAGAGTTCCACGAGCGGG
CGGCCTGCCTGGTGGAGCAGTACGGCAGGTACAGGATCGCCGAGGTCGACGTGCAGCTGG
ACGGGGAAAACACGCAGGGCGAAAACATTGCCGACAATGGGGGCATCAAGCAGGCGTTCC
TGGCGTACAGCAAGTGGCTCGCGGCTCAGACGGATCGGCGCGTGCTCGAGGCGGAAACGC
TGCCCGGGTTGAACGTGACGCGGACGCAGCTCTTCTTTCTCAACTTTGCCCAGATCTGGT
GCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGG
GCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACT
GCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGT
TAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGT
TGCTGTAACGCTCGCTGACATTTGCATGGTACCCGGATCATCTGACCTGACCGGATCAGA
TGGCAATGGGAATAAAAACGTGTGGCGTACGACACTACTATGCGTGTTACGTTTCGATCG
ATCGTACTTGATGTGTTCTATGTGCATGCCATATCCCGTCGTCATTGATCGCAGCGGGGC
TAGCGAGATGTGTCGTTGAATAAATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAA
CGACATATCTCCGCTACTTGCACGCTGCTTGTCAACATCCTAACCTCCCGCTGCAAGACA
CTAGTTAATTGAAATCAATTCCAAAACCCGTCCGAGAATCCCGCGCTCCGGTGA

consensusID : consensus_3332#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [TGCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGGGCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACTGCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGTTAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGTTGCTGTAACGCTCGCTGACATTTTCATGGTACCCGGATCATCTGACCTGACCGGATCAGATGGCAATGCGAATAAAAACGTGTAGCGTACGACACTACTATGCGTGTTACGTTTCGATCGATCGTACTTGATCTGTTCTATGTGCATGCCATATGGCTAGCGAGATGTGTCGTTGAATAAATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAACGACATATCTCCGCTACTTGCACGCTGCTTGTCACCATCCTAACCTCCCGCTACAAGACACTAGTTAATTGAAATCAATTC]

[+] EMBL BX620240             [TGCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGGGCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACTGCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGTTAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGTTGCTGTAACGCTCGCTGACATTTTCATGGTACCCGGATCATCTGACCTGACCGGATCAGATGGCAATGCGAATAAAAACGTGTAGCGTACGACACTACTATGCGTGTTACGTTTCGATCGATCGTACTTGATCTGTTCTATGTGCATGCCATATGGCTAGCGAGATGTGTCGTTGAATAAATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAACGACATATCTCCGCTACTTGCACGCTGCTTGTCACCATCCTAACCTCCCGCTACAAGACACTAGTTAATTGAAATCAATTC]




>consensus_3332#1
TGCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCG
GGCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCAC
TGCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGG
TTAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTG
TTGCTGTAACGCTCGCTGACATTTTCATGGTACCCGGATCATCTGACCTGACCGGATCAG
ATGGCAATGCGAATAAAAACGTGTAGCGTACGACACTACTATGCGTGTTACGTTTCGATC
GATCGTACTTGATCTGTTCTATGTGCATGCCATATGGCTAGCGAGATGTGTCGTTGAATA
AATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAACGACATATCTCCGCTACTTGCA
CGCTGCTTGTCACCATCCTAACCTCCCGCTACAAGACACTAGTTAATTGAAATCAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3332#0      CCGTCGTGATTGGGCACGAGCTAACGCACGGGTTCGACGACAAGGGCCGGCTGTTCGATC 60
consensus_3332#1      ------------------------------------------------------------
                                                                                  

consensus_3332#0      GGGACGGCAATCTGTACCGGTGGTGGAGTGATCGCGCGATCGAAGAGTTCCACGAGCGGG 120
consensus_3332#1      ------------------------------------------------------------
                                                                                  

consensus_3332#0      CGGCCTGCCTGGTGGAGCAGTACGGCAGGTACAGGATCGCCGAGGTCGACGTGCAGCTGG 180
consensus_3332#1      ------------------------------------------------------------
                                                                                  

consensus_3332#0      ACGGGGAAAACACGCAGGGCGAAAACATTGCCGACAATGGGGGCATCAAGCAGGCGTTCC 240
consensus_3332#1      ------------------------------------------------------------
                                                                                  

consensus_3332#0      TGGCGTACAGCAAGTGGCTCGCGGCTCAGACGGATCGGCGCGTGCTCGAGGCGGAAACGC 300
consensus_3332#1      ------------------------------------------------------------
                                                                                  

consensus_3332#0      TGCCCGGGTTGAACGTGACGCGGACGCAGCTCTTCTTTCTCAACTTTGCCCAGATCTGGT 360
consensus_3332#1      -----------------------------------------------------------T 1
                                                                                 *

consensus_3332#0      GCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGG 420
consensus_3332#1      GCGGCGCGATGCGGCCGGAAGCGACGCGCAACAAGCTGAAGACGGCCGTCCACAGCCCGG 61
                      ************************************************************

consensus_3332#0      GCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACT 480
consensus_3332#1      GCCGGTTCCGGGTGATCGGGACGCTCTCGAACTCGGAGGACTTTGCGCGCGAATATCACT 121
                      ************************************************************

consensus_3332#0      GCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGT 540
consensus_3332#1      GCCCGGTCGGTAGCACCATGAACCCGCCCGGCAAGTGCAGCGTGTGGTAGAGGGCAGGGT 181
                      ************************************************************

consensus_3332#0      TAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGT 600
consensus_3332#1      TAGGGCGACTGAGCTGCGTACGTTTGTAAATAAGGGAGAGCCGTGTTTAAGAAGTTGTGT 241
                      ************************************************************

consensus_3332#0      TGCTGTAACGCTCGCTGACATTTGCATGGTACCCGGATCATCTGACCTGACCGGATCAGA 660
consensus_3332#1      TGCTGTAACGCTCGCTGACATTTTCATGGTACCCGGATCATCTGACCTGACCGGATCAGA 301
                      *********************** ************************************

consensus_3332#0      TGGCAATGGGAATAAAAACGTGTGGCGTACGACACTACTATGCGTGTTACGTTTCGATCG 720
consensus_3332#1      TGGCAATGCGAATAAAAACGTGTAGCGTACGACACTACTATGCGTGTTACGTTTCGATCG 361
                      ******** ************** ************************************

consensus_3332#0      ATCGTACTTGATGTGTTCTATGTGCATGCCATATCCCGTCGTCATTGATCGCAGCGGGGC 780
consensus_3332#1      ATCGTACTTGATCTGTTCTATGTGCATGCCATAT-----------------------GGC 398
                      ************ *********************                       ***

consensus_3332#0      TAGCGAGATGTGTCGTTGAATAAATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAA 840
consensus_3332#1      TAGCGAGATGTGTCGTTGAATAAATAAAACCTTAGCTAGTAGTCGCTTACTAGCGAGAAA 458
                      ************************************************************

consensus_3332#0      CGACATATCTCCGCTACTTGCACGCTGCTTGTCAACATCCTAACCTCCCGCTGCAAGACA 900
consensus_3332#1      CGACATATCTCCGCTACTTGCACGCTGCTTGTCACCATCCTAACCTCCCGCTACAAGACA 518
                      ********************************** ***************** *******

consensus_3332#0      CTAGTTAATTGAAATCAATTCCAAAACCCGTCCGAGAATCCCGCGCTCCGGTGA 954
consensus_3332#1      CTAGTTAATTGAAATCAATTC--------------------------------- 539
                      *********************