These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [AGAAGTGATGCTTTGTCCGCAGTAGGTAGTACGCACGCTTCCCTGAAGGGTGCAGGTGTATGGTAGAGCGATTTCTGCTACATCTTCTGACTTTCAAGTTTGTGTTCCGCAAGAGCAGAACAGCACACAGGAGTTTGGTTGGTGGCTGTACGCAATACTACATCCTACCAAGCTCACTGTTTTACCTACAGTAGTTCAAGCTGCAGGGCAAATGGACAATGTCCAATGTGGTGGATGGAATGAACGCCGCAGGCGAAGGCTTAAAGGGGTTTATTTGCAACGGCCAGTGATTGCAATAAGCCCAGAGCAGTTGCACTTTCCATGCTTTTCCATGAGGAATGGAATGGATCCTCTCAACCACCACCGCCCGTACCGGATTGTTCATTGTCATGGGGTGAAGGAAGATCTCTTTAAACAAAA] [+] EMBL BX616405 [AGAAGTGATGCTTTGTCCGCAGTAGGTAGTACGCACGCTTCCCTGAAGGGTGCAGGTGTATGGTAGAGCGATTTCTGCTACATCTTCTGACTTTCAAGTTTGTGTTCCGCAAGAGCAGAACAGCACACAGGAGTTTGGTTGGTGGCTGTACGCAATACTACATCCTACCAAGCTCACTGTTTTACCTACAGTAGTTCAAGCTGCAGGGCAAATGGACAATGTCCAATGTGGTGGATGGAATGAACGCCGCAGGCGAAGGCTTAAAGGGGTTTATTTGCAACGGCCAGTGATTGCAATAAGCCCAGAGCAGTTGCACTTTCCATGCTTTTCCATGAGGAATGGAATGGATCCTCTCAACCACCACCGCCCGTACCGGATTGTTCATTGTCATGGGGTGAAGGAAGATCTCTTTAAACAAAA] consensusID : consensus_3363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CATGCCTGCTTTTTTGTTTTAATTTTTTTGGTTAATTCTTATTTTCGTTTATTTGTTATCTTTACTCCTTTTGACCACTCCTTCTCCTGCGACATGCTACCTCCCCGCACACTGCAGTTCGCAAATTACAGTCCATTTTGTTTTTTTTCTTCTATGCAGCGCAAACCGATTGTATTTATAATGCTGAATATGATAGGCGCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACGCACATGTCTTGGTCCCTTGGTTTAAAGGCAACTAGTTTGGTTTAAAGAGATCTTCCTTCACACCATGACAATGAACAATCCGGTACGGGCGGATGGTGGTTGAGAGGATCCAGTATCCAGTTCCTCGATGGA] [+] EMBL BX466918 [CATGCCTGCTTTTTTGTTTTAATTTTTTTGGTTAATTCTTATTTTCGTTTATTTGTTATCTTTACTCCTTTTGACCACTCCTTCTCCTGCGACATGCTACCTCCCCGCACACTGCAGTTCGCAAATTACAGTCCATTTTGTTTTTTTTCTTCTATGCAGCGCAAACCGATTGTATTTATAATGCTGAATATGATAGGCGCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACGCACATGTCTTGGTCCCTTGGTTTAAAGGCAACTAGTTTGGTTTAAAGAGATCTTCCTTCACACCATGACAATGAACAATCCGGTACGGGCGGATGGTGGTTGAGAGGATCCAGTATCCAGTTCCTCGATGGA] consensusID : consensus_3363#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [TTTTTTTTCTTCTATGCAGCGCAGAACGATTGTATTTTTAATGCTGAATATGATAGGCGCCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACACACACGCACATGTCTTGTCCCTTGTTTAAAGGCAATGTTTTGTTTAAAGAGATCTTCCTTCACCCCATGACAATGA] [+] EMBL AGA280240 [TTTTTTTTCTTCTATGCAGCGCAGAACGATTGTATTTTTAATGCTGAATATGATAGGCGCCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACACACACGCACATGTCTTGTCCCTTGTTTAAAGGCAATGTTTTGTTTAAAGAGATCTTCCTTCACCCCATGACAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3363#1 ----------------------------------------------CATGCCTGCTTTTT 14 consensus_3363#2 ------------------------------------------------------------ consensus_3363#0 AGAAGTGATGCTTTGTCCGCAGTAGGTAGTACGCACGCTTCCCTGAAGGGTGCAGGTGTA 60 consensus_3363#1 TGTTTTAATTTTTTTGGTTAATTCTTATTTTCGTTTATTTGTTATCTTTACTCCTTTTGA 74 consensus_3363#2 ------------------------------------------------------------ consensus_3363#0 TGGTAGAGCGATTTCTGCTACATCTTCTGACTTTCAAGTTTGTGTTCCGCAAGAGCAGAA 120 consensus_3363#1 CCACTCCTTCTCCTGCGACATGCTACCTCCCCGCACACTGCAGTTCGCAAATTACAGTCC 134 consensus_3363#2 ------------------------------------------------------------ consensus_3363#0 CAGCACACAGGAGTTTGGTTGGTGGCTGTACGCAATACTACATCCTACCAAGCTCACTGT 180 consensus_3363#1 ATTTTGTTTTTTTTCTTCTA-TGCAGCGCAAACCGATTGTATTTATAATGCTGAATATGA 193 consensus_3363#2 ------TTTTTTTTCTTCTA-TGCAGCGCAGAACGATTGTATTTTTAATGCTGAATATGA 53 consensus_3363#0 TTTACCTACAGTAGTTCAAGCTGCAGGGCAAATGGACAATGTCCAATGTGGTGGATGGAA 240 * * * ***** *** * ** * * ** ** ** * consensus_3363#1 TAGGCGC----------TGCTTAC---GCCTCACCATCAGATGGCAGAAAATAGAGGAAA 240 consensus_3363#2 TAGGCGCC---------TGCTTAC---GCCTCACCATCAGATGGCAGAAAATAGAGGAAA 101 consensus_3363#0 TGAACGCCGCAGGCGAAGGCTTAAAGGGGTTTATTTGCAACGGCCAGTGATTGCAATAAG 300 * *** ***** * * * ** * *** * * * ** consensus_3363#1 CACACG-CACATGTCTTGGTC----CCTTGGTTTAAAGGCAACTAGTTTGGTTTAAAGAG 295 consensus_3363#2 CACACA-CACACGCACATGTCTTGTCCCTTGTTTAAAGGCAAT--GTTTTGTTTAAAGAG 158 consensus_3363#0 CCCAGAGCAGTTGCACTTTCCATGCTTTTCCATGAGGAATGGAATGGATCCTCTCAACC- 359 * ** ** * * * * * * * * * ** consensus_3363#1 ATCTTCCTTCACACCATGACAATGAACAATCCGGTACGGGCGGATGGTGGTTGAGAGGAT 355 consensus_3363#2 ATCTTCCTTCACCCCATGACAATGA----------------------------------- 183 consensus_3363#0 ACCACCGCCCGTACCGGATTGTTCATTGTCATGGGGTGAAGGAAGATCTCTTTAAACAAA 419 * * * * ** * * consensus_3363#1 CCAGTATCCAGTTCCTCGATGGA 378 consensus_3363#2 ----------------------- consensus_3363#0 A---------------------- 420 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||