cluster # 3363

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Anopheles gambiae
cluster # 3363 cluster # 3363 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3363#0 length = 420 sequences # 1

consensus_3363#1 length = 378 sequences # 1
consensus_3363#2 length = 183 sequences # 1

consensusID : consensus_3363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [AGAAGTGATGCTTTGTCCGCAGTAGGTAGTACGCACGCTTCCCTGAAGGGTGCAGGTGTATGGTAGAGCGATTTCTGCTACATCTTCTGACTTTCAAGTTTGTGTTCCGCAAGAGCAGAACAGCACACAGGAGTTTGGTTGGTGGCTGTACGCAATACTACATCCTACCAAGCTCACTGTTTTACCTACAGTAGTTCAAGCTGCAGGGCAAATGGACAATGTCCAATGTGGTGGATGGAATGAACGCCGCAGGCGAAGGCTTAAAGGGGTTTATTTGCAACGGCCAGTGATTGCAATAAGCCCAGAGCAGTTGCACTTTCCATGCTTTTCCATGAGGAATGGAATGGATCCTCTCAACCACCACCGCCCGTACCGGATTGTTCATTGTCATGGGGTGAAGGAAGATCTCTTTAAACAAAA]

[+] EMBL BX616405             [AGAAGTGATGCTTTGTCCGCAGTAGGTAGTACGCACGCTTCCCTGAAGGGTGCAGGTGTATGGTAGAGCGATTTCTGCTACATCTTCTGACTTTCAAGTTTGTGTTCCGCAAGAGCAGAACAGCACACAGGAGTTTGGTTGGTGGCTGTACGCAATACTACATCCTACCAAGCTCACTGTTTTACCTACAGTAGTTCAAGCTGCAGGGCAAATGGACAATGTCCAATGTGGTGGATGGAATGAACGCCGCAGGCGAAGGCTTAAAGGGGTTTATTTGCAACGGCCAGTGATTGCAATAAGCCCAGAGCAGTTGCACTTTCCATGCTTTTCCATGAGGAATGGAATGGATCCTCTCAACCACCACCGCCCGTACCGGATTGTTCATTGTCATGGGGTGAAGGAAGATCTCTTTAAACAAAA]




>consensus_3363#0
AGAAGTGATGCTTTGTCCGCAGTAGGTAGTACGCACGCTTCCCTGAAGGGTGCAGGTGTA
TGGTAGAGCGATTTCTGCTACATCTTCTGACTTTCAAGTTTGTGTTCCGCAAGAGCAGAA
CAGCACACAGGAGTTTGGTTGGTGGCTGTACGCAATACTACATCCTACCAAGCTCACTGT
TTTACCTACAGTAGTTCAAGCTGCAGGGCAAATGGACAATGTCCAATGTGGTGGATGGAA
TGAACGCCGCAGGCGAAGGCTTAAAGGGGTTTATTTGCAACGGCCAGTGATTGCAATAAG
CCCAGAGCAGTTGCACTTTCCATGCTTTTCCATGAGGAATGGAATGGATCCTCTCAACCA
CCACCGCCCGTACCGGATTGTTCATTGTCATGGGGTGAAGGAAGATCTCTTTAAACAAAA

consensusID : consensus_3363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CATGCCTGCTTTTTTGTTTTAATTTTTTTGGTTAATTCTTATTTTCGTTTATTTGTTATCTTTACTCCTTTTGACCACTCCTTCTCCTGCGACATGCTACCTCCCCGCACACTGCAGTTCGCAAATTACAGTCCATTTTGTTTTTTTTCTTCTATGCAGCGCAAACCGATTGTATTTATAATGCTGAATATGATAGGCGCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACGCACATGTCTTGGTCCCTTGGTTTAAAGGCAACTAGTTTGGTTTAAAGAGATCTTCCTTCACACCATGACAATGAACAATCCGGTACGGGCGGATGGTGGTTGAGAGGATCCAGTATCCAGTTCCTCGATGGA]

[+] EMBL BX466918             [CATGCCTGCTTTTTTGTTTTAATTTTTTTGGTTAATTCTTATTTTCGTTTATTTGTTATCTTTACTCCTTTTGACCACTCCTTCTCCTGCGACATGCTACCTCCCCGCACACTGCAGTTCGCAAATTACAGTCCATTTTGTTTTTTTTCTTCTATGCAGCGCAAACCGATTGTATTTATAATGCTGAATATGATAGGCGCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACGCACATGTCTTGGTCCCTTGGTTTAAAGGCAACTAGTTTGGTTTAAAGAGATCTTCCTTCACACCATGACAATGAACAATCCGGTACGGGCGGATGGTGGTTGAGAGGATCCAGTATCCAGTTCCTCGATGGA]




>consensus_3363#1
CATGCCTGCTTTTTTGTTTTAATTTTTTTGGTTAATTCTTATTTTCGTTTATTTGTTATC
TTTACTCCTTTTGACCACTCCTTCTCCTGCGACATGCTACCTCCCCGCACACTGCAGTTC
GCAAATTACAGTCCATTTTGTTTTTTTTCTTCTATGCAGCGCAAACCGATTGTATTTATA
ATGCTGAATATGATAGGCGCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAA
CACACGCACATGTCTTGGTCCCTTGGTTTAAAGGCAACTAGTTTGGTTTAAAGAGATCTT
CCTTCACACCATGACAATGAACAATCCGGTACGGGCGGATGGTGGTTGAGAGGATCCAGT
ATCCAGTTCCTCGATGGA

consensusID : consensus_3363#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [TTTTTTTTCTTCTATGCAGCGCAGAACGATTGTATTTTTAATGCTGAATATGATAGGCGCCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACACACACGCACATGTCTTGTCCCTTGTTTAAAGGCAATGTTTTGTTTAAAGAGATCTTCCTTCACCCCATGACAATGA]

[+] EMBL AGA280240            [TTTTTTTTCTTCTATGCAGCGCAGAACGATTGTATTTTTAATGCTGAATATGATAGGCGCCTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACACACACGCACATGTCTTGTCCCTTGTTTAAAGGCAATGTTTTGTTTAAAGAGATCTTCCTTCACCCCATGACAATGA]




>consensus_3363#2
TTTTTTTTCTTCTATGCAGCGCAGAACGATTGTATTTTTAATGCTGAATATGATAGGCGC
CTGCTTACGCCTCACCATCAGATGGCAGAAAATAGAGGAAACACACACACACGCACATGT
CTTGTCCCTTGTTTAAAGGCAATGTTTTGTTTAAAGAGATCTTCCTTCACCCCATGACAA
TGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3363#1      ----------------------------------------------CATGCCTGCTTTTT 14
consensus_3363#2      ------------------------------------------------------------
consensus_3363#0      AGAAGTGATGCTTTGTCCGCAGTAGGTAGTACGCACGCTTCCCTGAAGGGTGCAGGTGTA 60
                                                                                  

consensus_3363#1      TGTTTTAATTTTTTTGGTTAATTCTTATTTTCGTTTATTTGTTATCTTTACTCCTTTTGA 74
consensus_3363#2      ------------------------------------------------------------
consensus_3363#0      TGGTAGAGCGATTTCTGCTACATCTTCTGACTTTCAAGTTTGTGTTCCGCAAGAGCAGAA 120
                                                                                  

consensus_3363#1      CCACTCCTTCTCCTGCGACATGCTACCTCCCCGCACACTGCAGTTCGCAAATTACAGTCC 134
consensus_3363#2      ------------------------------------------------------------
consensus_3363#0      CAGCACACAGGAGTTTGGTTGGTGGCTGTACGCAATACTACATCCTACCAAGCTCACTGT 180
                                                                                  

consensus_3363#1      ATTTTGTTTTTTTTCTTCTA-TGCAGCGCAAACCGATTGTATTTATAATGCTGAATATGA 193
consensus_3363#2      ------TTTTTTTTCTTCTA-TGCAGCGCAGAACGATTGTATTTTTAATGCTGAATATGA 53
consensus_3363#0      TTTACCTACAGTAGTTCAAGCTGCAGGGCAAATGGACAATGTCCAATGTGGTGGATGGAA 240
                            *    *   *     ***** *** *  **   * *      ** ** **   *

consensus_3363#1      TAGGCGC----------TGCTTAC---GCCTCACCATCAGATGGCAGAAAATAGAGGAAA 240
consensus_3363#2      TAGGCGCC---------TGCTTAC---GCCTCACCATCAGATGGCAGAAAATAGAGGAAA 101
consensus_3363#0      TGAACGCCGCAGGCGAAGGCTTAAAGGGGTTTATTTGCAACGGCCAGTGATTGCAATAAG 300
                      *   ***           *****    *  * *    **   * ***  * *  *  ** 

consensus_3363#1      CACACG-CACATGTCTTGGTC----CCTTGGTTTAAAGGCAACTAGTTTGGTTTAAAGAG 295
consensus_3363#2      CACACA-CACACGCACATGTCTTGTCCCTTGTTTAAAGGCAAT--GTTTTGTTTAAAGAG 158
consensus_3363#0      CCCAGAGCAGTTGCACTTTCCATGCTTTTCCATGAGGAATGGAATGGATCCTCTCAACC- 359
                      * **   **   *       *       *   * *          *  *  * * **   

consensus_3363#1      ATCTTCCTTCACACCATGACAATGAACAATCCGGTACGGGCGGATGGTGGTTGAGAGGAT 355
consensus_3363#2      ATCTTCCTTCACCCCATGACAATGA----------------------------------- 183
consensus_3363#0      ACCACCGCCCGTACCGGATTGTTCATTGTCATGGGGTGAAGGAAGATCTCTTTAAACAAA 419
                      * *  *   *   **       * *                                   

consensus_3363#1      CCAGTATCCAGTTCCTCGATGGA 378
consensus_3363#2      -----------------------
consensus_3363#0      A---------------------- 420