cluster # 3370

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3370 cluster # 3370 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3370#0 length = 808 sequences # 1

consensus_3370#1 length = 772 sequences # 1
consensus_3370#2 length = 372 sequences # 1

consensusID : consensus_3370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 808
fasta sequence

                              [ATTTTTCACTACCTGAAAAGATACATGCTCCTCCAGCGCATATACGCACACGCCCACACCCTCACACCGATTGGCGCAGAAAAAAGGAATAACAGAAAAATGATTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGGTTCTTGAAAGATGTATGAATCTATAAGGGATTAATGAATTTTGAAAGATTAATGAATCTCCAAGGATTCACGAATCTCGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTCACATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTCTCTTGTCGTGGATTCAAGCCTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATTAGGGTGGCAAGACTACGTAGGTTGTTACGCCCAAGAAGAAGAATACTGAAAAGCACAAGCTCTATGAATCTTCGGTGATTCATGAATCCCTTGAGATGCATGAATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTCTTGAAATTAATGATTTTTTCGAGATTCATGAATCTTTGGAGATTCGTGAGTCTTTCCAGACTCATGAATCCCCATATAGATGAATATTTGGAGATTCGTGAATCTTTAGAGATTCGTGAATCTTTAAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAAGATCATGAATCCTTATCAGATTTACCTACATCCAAGTACCGAACATAATTATAATGGTACATTCCGTAAAAAAAT]

[+] EMBL BX625557             [ATTTTTCACTACCTGAAAAGATACATGCTCCTCCAGCGCATATACGCACACGCCCACACCCTCACACCGATTGGCGCAGAAAAAAGGAATAACAGAAAAATGATTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGGTTCTTGAAAGATGTATGAATCTATAAGGGATTAATGAATTTTGAAAGATTAATGAATCTCCAAGGATTCACGAATCTCGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTCACATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTCTCTTGTCGTGGATTCAAGCCTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATTAGGGTGGCAAGACTACGTAGGTTGTTACGCCCAAGAAGAAGAATACTGAAAAGCACAAGCTCTATGAATCTTCGGTGATTCATGAATCCCTTGAGATGCATGAATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTCTTGAAATTAATGATTTTTTCGAGATTCATGAATCTTTGGAGATTCGTGAGTCTTTCCAGACTCATGAATCCCCATATAGATGAATATTTGGAGATTCGTGAATCTTTAGAGATTCGTGAATCTTTAAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAAGATCATGAATCCTTATCAGATTTACCTACATCCAAGTACCGAACATAATTATAATGGTACATTCCGTAAAAAAAT]




>consensus_3370#0
ATTTTTCACTACCTGAAAAGATACATGCTCCTCCAGCGCATATACGCACACGCCCACACC
CTCACACCGATTGGCGCAGAAAAAAGGAATAACAGAAAAATGATTTTTTTATGGAAAAAT
GATGAGTGATTCGAATCTCGAATCGGTTCTTGAAAGATGTATGAATCTATAAGGGATTAA
TGAATTTTGAAAGATTAATGAATCTCCAAGGATTCACGAATCTCGAAAGATCAATGAATC
TTCAAAAATTCATTAATCCATTAAAACTCACATCTTCAGGGATTCATGAATCTTCAGAGA
TGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTCTCTTGTCGTG
GATTCAAGCCTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATTAGGGTGGC
AAGACTACGTAGGTTGTTACGCCCAAGAAGAAGAATACTGAAAAGCACAAGCTCTATGAA
TCTTCGGTGATTCATGAATCCCTTGAGATGCATGAATCCTTAGAAATTTGCGAATTTTAA
GAGATATATAAATCTCTTGAAATTAATGATTTTTTCGAGATTCATGAATCTTTGGAGATT
CGTGAGTCTTTCCAGACTCATGAATCCCCATATAGATGAATATTTGGAGATTCGTGAATC
TTTAGAGATTCGTGAATCTTTAAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATT
GAATCATTTCAAAGATCATGAATCCTTATCAGATTTACCTACATCCAAGTACCGAACATA
ATTATAATGGTACATTCCGTAAAAAAAT

consensusID : consensus_3370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence

                              [CACATTCCTTCTCTCTCCCCTCTGTTGTTCGGGACAGGCATATTTGTCCTTTCCATTTTTCACTACCTGAAAAGATACATGCTCCAGCGCATATACGCACACGCGCACACTCTCACACCGATTGGCCCAGAAAAAAGGAATAACGGAAAAATGATTTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGATTCTCNAAAGATGTATGAATCTATAAAGGATTCACGAATCTGGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTAATATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTGTCTTGNCGTGGATTCAAGCTTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATAGGGTGGCAAGACTACGTANGTTGTTACGCCCAAGAAGAAGAATAATGAAAAGCACAAGCTCTATGAATCTTCGGTGATTTATGAATCCCTTGAGATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTTTTGAAATTAATGATTTTTTCGAGATTCATGAGTTTTTCGAGATTCATGGATCTTTGGAGATTCGTGAGTCTTTCGAGACTCATGAATCCCCACATAGATGAATATTTGGAGATTCGTGAATCTTTGAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAGATTCATGAATCTGAATCANATTTACCTAACAT]

[+] EMBL BX622614             [CACATTCCTTCTCTCTCCCCTCTGTTGTTCGGGACAGGCATATTTGTCCTTTCCATTTTTCACTACCTGAAAAGATACATGCTCCAGCGCATATACGCACACGCGCACACTCTCACACCGATTGGCCCAGAAAAAAGGAATAACGGAAAAATGATTTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGATTCTCNAAAGATGTATGAATCTATAAAGGATTCACGAATCTGGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTAATATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTGTCTTGNCGTGGATTCAAGCTTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATAGGGTGGCAAGACTACGTANGTTGTTACGCCCAAGAAGAAGAATAATGAAAAGCACAAGCTCTATGAATCTTCGGTGATTTATGAATCCCTTGAGATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTTTTGAAATTAATGATTTTTTCGAGATTCATGAGTTTTTCGAGATTCATGGATCTTTGGAGATTCGTGAGTCTTTCGAGACTCATGAATCCCCACATAGATGAATATTTGGAGATTCGTGAATCTTTGAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAGATTCATGAATCTGAATCANATTTACCTAACAT]




>consensus_3370#1
CACATTCCTTCTCTCTCCCCTCTGTTGTTCGGGACAGGCATATTTGTCCTTTCCATTTTT
CACTACCTGAAAAGATACATGCTCCAGCGCATATACGCACACGCGCACACTCTCACACCG
ATTGGCCCAGAAAAAAGGAATAACGGAAAAATGATTTTTTTTATGGAAAAATGATGAGTG
ATTCGAATCTCGAATCGATTCTCNAAAGATGTATGAATCTATAAAGGATTCACGAATCTG
GAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTAATATCTTCAGGGATT
CATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCA
AACTTGTCTTGNCGTGGATTCAAGCTTCGTATGGACCGTCTCTCAAAAAATACTCAAAAG
CCTGTATAGGGTGGCAAGACTACGTANGTTGTTACGCCCAAGAAGAAGAATAATGAAAAG
CACAAGCTCTATGAATCTTCGGTGATTTATGAATCCCTTGAGATCCTTAGAAATTTGCGA
ATTTTAAGAGATATATAAATCTTTTGAAATTAATGATTTTTTCGAGATTCATGAGTTTTT
CGAGATTCATGGATCTTTGGAGATTCGTGAGTCTTTCGAGACTCATGAATCCCCACATAG
ATGAATATTTGGAGATTCGTGAATCTTTGAGATTCATGAATCTTTGCGACCGAGATTCAG
ATTCATTGAATCATTTCAAGATTCATGAATCTGAATCANATTTACCTAACAT

consensusID : consensus_3370#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [TTTTTTTTAATCTTTCGTTTGTTGGGCGTGTTTCTACGTTGCTTATTATTTACAGTGCTGCTACGTGGTAGAAACATTTTACAATTGGATAACGTACATTAATTAGGATTTGTTTTTTGAATACATGTATACTAGTGTTGGGTAATTCTGATTCAGATGCTTGAATCGGAATGAATCTTTGAAATGATTCAATGCATCTGAAGCTGGATTGCAAAGATTCATGAATCTCGAAAGATCCACGAATCTCTAGGGATTAATTTCCTAGGAAATCTCCAAGGATTCATAGAGCTTGAGCTTTTCATTATTCTTCTTCTTGGCGTAACAACAACAAGCTTTCGAGATTTCTTGGTGTGTACCACGCAGCCGGTTAGT]

[+] EMBL AGA280302            [TTTTTTTTAATCTTTCGTTTGTTGGGCGTGTTTCTACGTTGCTTATTATTTACAGTGCTGCTACGTGGTAGAAACATTTTACAATTGGATAACGTACATTAATTAGGATTTGTTTTTTGAATACATGTATACTAGTGTTGGGTAATTCTGATTCAGATGCTTGAATCGGAATGAATCTTTGAAATGATTCAATGCATCTGAAGCTGGATTGCAAAGATTCATGAATCTCGAAAGATCCACGAATCTCTAGGGATTAATTTCCTAGGAAATCTCCAAGGATTCATAGAGCTTGAGCTTTTCATTATTCTTCTTCTTGGCGTAACAACAACAAGCTTTCGAGATTTCTTGGTGTGTACCACGCAGCCGGTTAGT]




>consensus_3370#2
TTTTTTTTAATCTTTCGTTTGTTGGGCGTGTTTCTACGTTGCTTATTATTTACAGTGCTG
CTACGTGGTAGAAACATTTTACAATTGGATAACGTACATTAATTAGGATTTGTTTTTTGA
ATACATGTATACTAGTGTTGGGTAATTCTGATTCAGATGCTTGAATCGGAATGAATCTTT
GAAATGATTCAATGCATCTGAAGCTGGATTGCAAAGATTCATGAATCTCGAAAGATCCAC
GAATCTCTAGGGATTAATTTCCTAGGAAATCTCCAAGGATTCATAGAGCTTGAGCTTTTC
ATTATTCTTCTTCTTGGCGTAACAACAACAAGCTTTCGAGATTTCTTGGTGTGTACCACG
CAGCCGGTTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3370#0      ------------------------------------------------------ATTTTT 6
consensus_3370#1      CACATTCCTTCTCTCTCCCCTCTGTTGTTCGGGACAGGCATATTTGTCCTTTCCATTTTT 60
consensus_3370#2      ------------------------------------------------------------
                                                                                  

consensus_3370#0      CACTACCTGAAAAGATACATGCTCCTCCAGCGCATATACGCACACGCCCACACCCTCACA 66
consensus_3370#1      CACTACCTGAAAAGATACATGCTCC---AGCGCATATACGCACACGCGCACACTCTCACA 117
consensus_3370#2      ------------------------------------------------------------
                                                                                  

consensus_3370#0      CCGATTGGCGCAGAAAAAAGGAATAACAGAAAAATGATTTTTTT-ATGGAAAAATGATGA 125
consensus_3370#1      CCGATTGGCCCAGAAAAAAGGAATAACGGAAAAATGATTTTTTTTATGGAAAAATGATGA 177
consensus_3370#2      ------------------------------------------------------------
                                                                                  

consensus_3370#0      GTGATTCGAATCTCGAATCGGTTCTTGAAAGATGTATGAATCTATAAGGGATTAATGAAT 185
consensus_3370#1      GTGATTCGAATCTCGAATCGATTCTCNAAAGATGTATGAATCTATAA------------- 224
consensus_3370#2      ------------------------------------------------------------
                                                                                  

consensus_3370#0      TTTGAAAGATTAATGAATCTCCAAGGATTCACGAATCTCGAAAGATCAATGAATCTTCAA 245
consensus_3370#1      -----------------------AGGATTCACGAATCTGGAAAGATCAATGAATCTTCAA 261
consensus_3370#2      -----------------------------------------------------TTTTTTT 7
                                                                           * **   

consensus_3370#0      AAATTCATTAATCCATTAAAACTCACATCTTCAGGGATTCATGAATCTTCAGAGATGAAT 305
consensus_3370#1      AAATTCATTAATCCATTAAAACTAATATCTTCAGGGATTCATGAATCTTCAGAGATGAAT 321
consensus_3370#2      TAATCT-TTCGTTTGTTGGG-CGTGTTTCTACGTTGCTTATT--ATTTACAGTGCTGCTA 63
                       ***   **  *   **    *     *** *   * **  *  ** * *** * **   

consensus_3370#0      GATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTCTCTTGTCGTGGATTC 365
consensus_3370#1      GATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTGTCTTGNCGTGGATTC 381
consensus_3370#2      CGTGGTAGAAACATTTTA------CAATTGGATAACGTACATTAATTAGGATTTGTTTTT 117
                        *  ** * * ***  *      * **   *    * * * *  *   *   **  ** 

consensus_3370#0      AAGCCTCGTATGGACCGTCTCTCAAAAAAT---ACTCAAAAGCCTGTATTAGGGTGGCAA 422
consensus_3370#1      AAGCTTCGTATGGACCGTCTCTCAAAAAAT---ACTCAAAAGCCTGTAT-AGGGTGGCAA 437
consensus_3370#2      TGAATACATGTATACTAGTGTTGGGTAATTCTGATTCAGATGCTTGAATCGGAATG--AA 175
                            * * *  **      *    ** *   * *** * ** ** **  *  **  **

consensus_3370#0      GACTACGTAGGTTGTTACGCCCAAGAAGAAGAATACTGAAAAGCACAAGCTCTATGAATC 482
consensus_3370#1      GACTACGTANGTTGTTACGCCCAAGAAGAAGAATAATGAAAAGCACAAGCTCTATGAATC 497
consensus_3370#2      TCTTTGAAATGATTCAATGCATCTGAAG-------CTGGATTGCA-AAGATTCATGAATC 227
                         *    * * *   * **    ****        ** *  *** *** *  *******

consensus_3370#0      TTCGGTGATTCATGAATCCCTTGAGATGCATGAATCCTTAGAAATTTGCGAATTTTAAGA 542
consensus_3370#1      TTCGGTGATTTATGAATCCCTTGAGAT--------CCTTAGAAATTTGCGAATTTTAAGA 549
consensus_3370#2      TCGAAAGATCCACGAATCTCTAGGGATTAAT--TTCCTAGGAAATCTCCAAGGATTCATA 285
                      *     ***  * ***** ** * ***        ***  ***** * * *   ** * *

consensus_3370#0      GATATATAAATCTCTTGAAATTAATGATTTTTTCGAGATT-CATGAATCTTTGGAGATTC 601
consensus_3370#1      GATATATAAATCTTTTGAAATTAATGATTTTTTCGAGATT-CATGAGTTTTTCGAGATTC 608
consensus_3370#2      GA-GCTTGAGCTTTTCATTATTCTTCTTCTTGGCGTAACAACAACAAGCTTTCGAGATTT 344
                      **    * *   * *    ***  *  * **  **  *   **  *   *** ****** 

consensus_3370#0      GTGAGTCTTTCCAGACTCATGAATCCCCATATAGATGAATATTTGGAGATTCGTGAATCT 661
consensus_3370#1      ATGGATCTTTGGAGATTCGTGAGTCTTTCGAGACTCATGAATCCCCACATAGATGAATAT 668
consensus_3370#2      CTTGGTGTGTACCACGCAGCCGGTTAGT-------------------------------- 372
                       *   * * *             *                                    

consensus_3370#0      TTAGAGATTCGTGAATCTTTAAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTG 721
consensus_3370#1      TTGGAGATTCGTGAATCTTTGAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTG 728
consensus_3370#2      ------------------------------------------------------------
                                                                                  

consensus_3370#0      AATCATTTCAAAGATCATGAATCCTTATCAGATTTACCTA-CATCCAAGTACCGAACATA 780
consensus_3370#1      AATCATTTCAAGATTCATGAATCTGAATCANATTTACCTAACAT---------------- 772
consensus_3370#2      ------------------------------------------------------------
                                                                                  

consensus_3370#0      ATTATAATGGTACATTCCGTAAAAAAAT 808
consensus_3370#1      ----------------------------
consensus_3370#2      ----------------------------