These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [CGTCATTGTTGGGAAACAGTAGATCTACGCTCAAACCCGCCCGCTTCAGACGAGCTTCAATACCTTCCGCATGTGGGGTTAGCTCCTTGTTCACCACTATGATTTCACAATCATTGCTTTCTATTCCTCGATGTGGTGCCTGCCCGATCGGGGTCTCCGGATACACGCTACTTAAATCGGCAACACTGTATTGCTGTGGATGGTATCCACGTTTGATCGGATGGATCGGATCCACGGGCGAACGGTCGCGGGCAGCGGCACCCGACGCGTTTGACTTGGCATTCGAAGCTGCTGTACTACCCCGCGGTAGCAATCCCTTCTTTGCGCGATTGTCGTTGGCCACCTTTACCATCAGTTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGACGCAGGAGGACACACAATATCCGCTTTAATTTTGCTGTAACAGAAGAAA] [+] EMBL AGA282072 [CGTCATTGTTGGGAAACAGTAGATCTACGCTCAAACCCGCCCGCTTCAGACGAGCTTCAATACCTTCCGCATGTGGGGTTAGCTCCTTGTTCACCACTATGATTTCACAATCATTGCTTTCTATTCCTCGATGTGGTGCCTGCCCGATCGGGGTCTCCGGATACACGCTACTTAAATCGGCAACACTGTATTGCTGTGGATGGTATCCACGTTTGATCGGATGGATCGGATCCACGGGCGAACGGTCGCGGGCAGCGGCACCCGACGCGTTTGACTTGGCATTCGAAGCTGCTGTACTACCCCGCGGTAGCAATCCCTTCTTTGCGCGATTGTCGTTGGCCACCTTTACCATCAGTTTTCGACCGTTGAACAGCTTGCCGT ] [-] EMBL AGA280371 [ ACTTGGCAATAGAAGATGCTGTACTACCCCGCGGTAGCAATCCCTTCTATGCGCGATTGTCGTTAGCCACCTTTACCATCAGTTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGACGCAGGAGGACACACAATATCCGCTTTAATTTTGCTGTAACAGAAGAAA] consensusID : consensus_3376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [TGTACTACCCCCGCGGTAGCAATCCCTGTCTTTGGCGCGATTGTCGTTGGCCACCTTTACCAGTCAGTCTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGAACGCAGGAGGACAACAATATCCGCTTAATTTACACTCGTCGCGATTCT] [-] EMBL BX469077 [TGTACTACCCCCGCGGTAGCAATCCCTGTCTTTGGCGCGATTGTCGTTGGCCACCTTTACCAGTCAGTCTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGAACGCAGGAGGACAACAATATCCGCTTAATTTACACTCGTCGCGATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3376#0 CGTCATTGTTGGGAAACAGTAGATCTACGCTCAAACCCGCCCGCTTCAGACGAGCTTCAA 60 consensus_3376#1 ------------------------------------------------------------ consensus_3376#0 TACCTTCCGCATGTGGGGTTAGCTCCTTGTTCACCACTATGATTTCACAATCATTGCTTT 120 consensus_3376#1 ------------------------------------------------------------ consensus_3376#0 CTATTCCTCGATGTGGTGCCTGCCCGATCGGGGTCTCCGGATACACGCTACTTAAATCGG 180 consensus_3376#1 ------------------------------------------------------------ consensus_3376#0 CAACACTGTATTGCTGTGGATGGTATCCACGTTTGATCGGATGGATCGGATCCACGGGCG 240 consensus_3376#1 ------------------------------------------------------------ consensus_3376#0 AACGGTCGCGGGCAGCGGCACCCGACGCGTTTGACTTGGCATTCGAAGCTGCTGTACTAC 300 consensus_3376#1 ----------------------------------------------------TGTACTAC 8 ******** consensus_3376#0 CCC-GCGGTAGCAATCCCT-TCTTTG-CGCGATTGTCGTTGGCCACCTTTACCA-TCAGT 356 consensus_3376#1 CCCCGCGGTAGCAATCCCTGTCTTTGGCGCGATTGTCGTTGGCCACCTTTACCAGTCAGT 68 *** *************** ****** *************************** ***** consensus_3376#0 -TTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTC 415 consensus_3376#1 CTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTC 128 *********************************************************** consensus_3376#0 GGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAA 475 consensus_3376#1 GGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAA 188 ************************************************************ consensus_3376#0 ATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTA 535 consensus_3376#1 ATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTA 248 ************************************************************ consensus_3376#0 CACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTG 595 consensus_3376#1 CACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTG 308 ************************************************************ consensus_3376#0 GGA-CGCAGGAGGACACACAATATCCGCTTTAATTTTGCT-GTAACAGAAGAAA 647 consensus_3376#1 GGAACGCAGGAGGACA-ACAATATCCGCTTAATTTACACTCGTCGCGATTCT-- 359 *** ************ ************* * ** ** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||