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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 973 fasta sequence
[CCGNCCGGACCGGNATGTAAATACGTGCACTCGGTTAAACGNCCGATTGCCTAGATGGGCAGCAATAGCTACTGTCACCTTGCGGCTGAACTCTGTGCNTCGCGTTAGACGCGCGATGCGGTTCGATTACGATTGATCAACTGGTGAATTTCCGTTCCAGTACCAAGATCGATGATCGCACCACTTCTCAGCGGCATCATCTGTGTGTGCCGCGGCTGCACTGCTGCCGTTGCGCGGGAGAAGCATTCACGATCACTGATCGTAGTAAACATGACCGATAACTTCTCTGGTCCCCTCGGTGGTCGCCTATCTCAGCAGTGTTTACGCGCGGCAGAGAGAATGCACGCGTTTGGGGGGGTGGCATGCGAGAGAGGCAACAAGTCGAACGATCGGTTGTTGATTTTTCCCGGGTGCACATACGTAGCGGAGGCAGCTTCGAAGCGTCCAGCGCTGCCCAGTTACGAACGCGCCAGTCTTGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACC------CGACGATACTCAACAGCCGCGTGGTGTGGTGGGTTTTAGTAAAAGTTTTCGGTTGCTGCGCAATGTTGATCTTGTTCGCGAGTGGTGTGTTGCGGGTTGGTTTTGCGTGTCTACTGTGACAGCAACAGCATTCGTTCGTTTCTGTTTGCGCTGGACGAAGTGAATGGTTCGTCTCTCCCGGTAATCTGGAGAGCCCGAAGAGAAGTGCCACTGTGAACAAATATCAAACAAACACAATTCGGTTGGAGTAGGGAATTGTTCAAGATACAAGTAGGGCCCCGTTTCAGGATGTTTTCGCGCAAACAGTGAAAAACAGGGTACGAACAGTGCTTTTGTTTGACTCGTGACAAAAAATTGGAAATTGAGATATTTCTCGAGGGGTTTTAGCCTGGGTAAT]
[-] EMBL BX626570 [CCGNCCGGACCGGNATGTAAATACGTGCACTCGGTTAAACGNCCGATTGCCTAGATGGGCAGCAATAGCTACTGTCACCTTGCGGCTGAACTCTGTGCNTCGCGTTAGACGCGCGATGCGGTTCGATTACGATTGATCAACTGGTGAATTTCCGTTCCAGTACCAAGATCGATGATCGCACCACTTCTCAGCGGCATCATCTGTGTGTGCCGCGGCTGCACTGCTGCCGTTGCGCGGGAGAAGCATTCACGATCACTGATCGTAGTAAACATGACCGATAACTTCTCTGGTCCCCTCGGTGGTCGCCTATCTCAGCAGTGTTTACGCGCGGCAGAGAGAATGCACGCGTTTGGGGGGGTGGCATGCGAGAGAGGCAACAAGTCGAACGATCGGTTGTTGATTTTTCCCGGGTGCACATACGTAGCGGAGGCAGCTTCGAAGCGTCCAGCGCTGCCCAGTTACGAACGCGCCAGTCTTGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACC CGACGATACTCAACAGCCGCGTGGTGTGGTGGGTTTTAGTAAAAGTTTTCGGTTGCTGCGCAATGTTGATCTTGTTCGCGAG ]
[+] EMBL BM625378 [ ccgcccACGCGTCCG CTTGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCAACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACCCGGTTACGACGATACTCAACAGCCGCGTGGTGTGGTGGGTTTTAGTAAAAGTTTTAGGGTGCTGCGCAATGTTGATCTTGTTCGCGAGTGGTGTGTTGCGGGTTGGTTTTGCGTGTCTACTGTGACAGCAACAGCATTCGTTCGTTTCTGTTTGCGCTGGACGAAGTGAATGGTTCGTCTCTCCCGGTAATCTGGAGAGCCCGAAGAGAAGTGCCACTGTGAACAAATATCAAACAAACACAATTCGGTTGGAGTAGGGAATTGTTCAAGATACAAGTAGGGCCCCGTTTCAGGATGTTTTCGCGCAAACAGTGAAAAACAGGGTACGAACAGTGCTTTTGTTTGACTCGTGACAAAAAATTGGAAATTGAGATATTTCTCGAGGGGTTTTAGCCTGGGTAAT]
consensusID : consensus_3383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[CCGGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGGTCTATTATACCCGGTTCCGACGATACTCAACAGCCGCGTGGTGTGTTCGAGAACTGCGCATGTTTATCCAGTTTTTTTTCGTTGTGTTATTCTGTGCCCATGCTATTAACACCTTTGCTGTTCCTTGCAGTGTGTGATAGTGTCGCGATGAGCTTTTTGGATTAGGTTGAAACCTGTGTGAAATGAAGGTATTTGCCGTGCGCCCGTATGTGCCTAGGACAGCAGCCGTAGGGCAGTTGTGAAAATCGTGACAAACGCAAAACATTACCTTCTGCTATATCGTGCCCTCCCCCCCATCGTTCATAAAGTGTACAGTGCATTATGCTAATCAATGCGATACTGAGGGCATTTATCGTGCACACGCTGAAACGCCGACGACGACGCACCAAATGTACGCTGCTGCGAGCGTTCCTCAGAATGGTGAACTTCCGCCGATTCGGCCACTATCAGCGCTACCTGGCGTATCCGGTGCGCGAGGTCGATGGACCAGCGCCGAGGGTCGTTCCACCGGTGGAGGCGGCGGCGGCGCCACCAGCGGCCGTAGCCGCCATACCTGCAAATGTCCCACCGGAGCAGGGCGCTAACAGGCGT]
[+] EMBL BM620739 [CCGGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGGTCTATTATACCCGGTTCCGACGATACTCAACAGCCGCGTGGTGTGTTCGAGAACTGCGCATGTTTATCCAGTTTTTTTTCGTTGTGTTATTCTGTGCCCATGCTATTAACACCTTTGCTGTTCCTTGCAGTGTGTGATAGTGTCGCGATGAGCTTTTTGGATTAGGTTGAAACCTGTGTGAAATGAAGGTATTTGCCGTGCGCCCGTATGTGCCTAGGACAGCAGCCGTAGGGCAGTTGTGAAAATCGTGACAAACGCAAAACATTACCTTCTGCTATATCGTGCCCTCCCCCCCATCGTTCATAAAGTGTACAGTGCATTATGCTAATCAATGCGATACTGAGGGCATTTATCGTGCACACGCTGAAACGCCGACGACGACGCACCAAATGTACGCTGCTGCGAGCGTTCCTCAGAATGGTGAACTTCCGCCGATTCGGCCACTATCAGCGCTACCTGGCGTATCCGGTGCGCGAGGTCGATGGACCAGCGCCGAGGGTCGTTCCACCGGTGGAGGCGGCGGCGGCGCCACCAGCGGCCGTAGCCGCCATACCTGCAAATGTCCCACCGGAGCAGGGCGCTAACAGGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3383#0 CCGNCCGGACCGGNATGTAAATACGTGCACTCGGTTAAACGNCCGATTGCCTAGATGGGC 60
consensus_3383#1 ------------------------------------------------------------
consensus_3383#0 AGCAATAGCTACTGTCACCTTGCGGCTGAACTCTGTGCNTCGCGTTAGACGCGCGATGCG 120
consensus_3383#1 ------------------------------------------------------------
consensus_3383#0 GTTCGATTACGATTGATCAACTGGTGAATTTCCGTTCCAGTACCAAGATC-GATGATCGC 179
consensus_3383#1 ------------------------------CCGGCCGCACGGGCGAGAGCTGATCATCGC 30
* * ** * *** * *** *****
consensus_3383#0 ACCACTTCTCAGCGGCATCATCTGTGTGTGCCGCGGCTGCACT--GCTGCCGTTGCGCGG 237
consensus_3383#1 GTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGGTCTATTAT 90
**** **** * * * * ** * * * * * * ** * **
consensus_3383#0 GAGAAGCATTCACGATCACTGATCGTAGTA-AACATGACCGATAACTTCTCTGGTCCCCT 296
consensus_3383#1 ACCCGGTTCCGACGATACTCAACAGCCGCGTGGTGTGTTCGAGAACTGCGCATGTTTATC 150
* ***** * * * ** *** **** * * **
consensus_3383#0 CGGTGGTCGCCTATCTCAGCAGTGTTTACGCGCGGCAGAGAGAATGCACGCGTTTGGGGG 356
consensus_3383#1 CAGT------TTTTTTTCGTTGTGTTATTCTGTGCCCATGCTATTA-ACACCTTTGC--- 200
* ** * * * * ***** * * * * * * ** * ****
consensus_3383#0 GGTGGCATGCGAGAGAGGCAACAAGTCGAACGATCGGTTGTTGATTTTTCCCGGGTGCAC 416
consensus_3383#1 TGTTCCTTGC-AGTGTGTGATAGTGTCG--CGATGAGCTTTTTGGATTAGGTTGAAACCT 257
** * *** ** * * * **** **** * * ** ** * *
consensus_3383#0 ATACGTAGCGGAGGCAGCTTCGAAGCGTCCAGCGCTGCCCAGTTACGAACGCGCCAGTCT 476
consensus_3383#1 GTGTGAAATGAAGGTATTTGCCGTGCGCCCGTATGTGCCTAGG-------ACAGCAGCCG 310
* * * * *** * * * *** ** **** ** * *** *
consensus_3383#0 TGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCC 536
consensus_3383#1 TAGGGCAGTTGTGAAAATCGTGACAAACG--CAAAACATTACCTTCTGCTATATCGTGCC 368
* * ** ** * * ** * * ** * ** * * ** * ***
consensus_3383#0 GACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACCCGACGATACTCAACAGCCGC 596
consensus_3383#1 CTCCCCCCCATCGTTCATAAAGTGTACAGTGCATTATGCTAATCAATGCGATACTGAGGG 428
* ** *** * * * ***** * * ** * ** * *
consensus_3383#0 GTGGTGTGGTGGGTTTTAGTAAAAGTTTTCGGTTGCTGCGCAATGTTGATCTTGTTCGCG 656
consensus_3383#1 CATTTATCGTGCACACGCTGAAACGCCGACGAC-GACGCACCAAATGTACGCTGCT-GCG 486
* * *** *** * ** * ** * * * * ** * ***
consensus_3383#0 AGTGGTGTGTTGCGGGTTGGTTTTGCGTGTCTACTGTGACAGCAACAGCATTCGTTCGTT 716
consensus_3383#1 AGCGTTCCTCAGAATGGTGAACTTCCGC--CGATTCGGCCACTATCAGCGCTACCTGGC- 543
** * * * * ** ** ** * * * * ** * **** * * *
consensus_3383#0 TCTGTTTGCGCTGGACGAAGTGAATGGTTCGTCTCTCCCGGTAATCT-----GGAGAGCC 771
consensus_3383#1 ---GTATCCGGTGCGCGAGGTCGATGGACCAGCGCCGAGGGTCGTTCCACCGGTGGAGGC 600
** * ** ** *** ** **** * * * *** * * *** *
consensus_3383#0 CGAAGAGAAGT-GCCACTGTGAACAAATATCAAACAAACACA-ATTCGGTTGGAGTAGGG 829
consensus_3383#1 GGCGGCGGCGCCACCAGCGGCCGTAGCCGCCATACCTGCAAATGTCCCACCGGAGCAGGG 660
* * * * *** * * ** ** ** * * * **** ****
consensus_3383#0 AATTGTTCAAGATACAAGTAGGGCCCCGTTTCAGGATGTTTTCGCGCAAACAGTGAAAAA 889
consensus_3383#1 CGCTAACAGGCGT----------------------------------------------- 673
* *
consensus_3383#0 CAGGGTACGAACAGTGCTTTTGTTTGACTCGTGACAAAAAATTGGAAATTGAGATATTTC 949
consensus_3383#1 ------------------------------------------------------------
consensus_3383#0 TCGAGGGGTTTTAGCCTGGGTAAT 973
consensus_3383#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||