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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCAATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATAAGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCTAACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATGATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTTCCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGTTCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCAAAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAATATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTGCATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAATGCATGCGAGGACAT]
[+] EMBL BM620553 [CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCAATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATAAGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCTAACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATGATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTTCCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGTTCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCAAAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAATATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTGCATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAATGCATGCGAGGACAT]
consensusID : consensus_3387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 243 fasta sequence
[CTCCCACCACAGTAACAATACTGAATTTTAGTACGTCCATAATCCTACAATGCATGCGAGGACATGCATTAACGCATATACGCAGGTGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGCGGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTAGAGCAAGATCGGTTAACGTCGAG]
[+] EMBL BX610886 [CTCCCACCACAGTAACAATACTGAATTTTAGTACGTCCATAATCCTACAATGCATGCGAGGACATGCATTAACGCATATACGCAGGTGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGCGGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTA ]
[+] EMBL BX618056 [ CGTTTATAATTCTACAATGCATGCGAGGACATGCATTAACGCATATATGCATGTTACAGCTTTTAATTGCATTTTTGTAAAATCTGTAATAACATACAAAATTAAAACATTGCGGAACCCCTTATAACAAGTTTTTGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTAGAGCAAGATCGGTTAACGTCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3387#0 CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCA 60
consensus_3387#1 ------------------------------------------------------------
consensus_3387#0 ATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATA 120
consensus_3387#1 ------------------------------------------------------------
consensus_3387#0 AGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCT 180
consensus_3387#1 ------------------------------------------------------------
consensus_3387#0 AACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATG 240
consensus_3387#1 ------------------------------------------------------------
consensus_3387#0 ATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTT 300
consensus_3387#1 ------------CTCCCACCACAGTA-ACAATACTGAATTTTAGTACGTCCATAATCCTA 47
* ***** * ** * ** * *** * * * * ******
consensus_3387#0 CCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGT 360
consensus_3387#1 C----------AATGCATGCGAGGACATGCATTAAC---GCATA--------TACGCAGG 86
* ***** *** ** *** * ***** * ***
consensus_3387#0 TCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCA 420
consensus_3387#1 TGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGC 146
* * ** *** *** ** * * ** * ** * *** ***
consensus_3387#0 AAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAAT 480
consensus_3387#1 GGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAA-ATCTGAACAAGTGTAAAGGAT 205
* ** * * * ** * **** *** ** * * * * ***** **
consensus_3387#0 ATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTG 540
consensus_3387#1 CTAATTTAAA-ATCTAGAGCAAGATCGGTTAACGTCGAG--------------------- 243
**** *** ** * ** * * *
consensus_3387#0 CATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAAT 600
consensus_3387#1 ------------------------------------------------------------
consensus_3387#0 GCATGCGAGGACAT 614
consensus_3387#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||