cluster # 3392

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Anopheles gambiae
cluster # 3392 cluster # 3392 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3392#0 length = 706 sequences # 1

consensus_3392#1 length = 481 sequences # 1
consensus_3392#2 length = 303 sequences # 1

consensusID : consensus_3392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [TATCCCCTTCCCTTCCCCCCCATCTCCCTTTAATCCTTTTCCTCTTCTCACCGAAAAAAAAAAACACACACACACACATAACAAATAAAATAAGTAAAATGCTTACAGTAAAGCGGGAGGAAAAGCATGTAAAGAATAAGTAATAGTTAAGCAGCACATTTAGAACTAGACGGCAGGGTGGATGGACGATCGGACGGTAGATGAGAGAAAAGAGATAAATATTAACATTAACAAAAAACAAACAAAAAAACTAGCGAGTAAGAAATTAAAGAAAACACAACCACATACACACATAAGTTAATGAAACACAGAAATGGGATAGGAAACGAAACAAACATTCAAGCTAAACATAACAAAGAAGAAACAGATAAACAGATACAAAAAAAGAGAGAGAGAGAGATAGAGTAAGCCAACAAGGAAAAAGATAACAAACACACAGCAGTAAAAAAGATGCAAACACAAAAATACACAATTCAAAACACACAATGCATACATACATACACAGAACAAACCCCCGAGATTTAAGAATAACGAAAGAGGATACAACAAGAAAAGTAGAAGCAGAAAGTAAAAACNACCACAGAAAAAGAAGAAGAAAACAAACCAAAAAACTCAAACAAACACNCNCAAGAATGAAAAGAGAGAAAAACCAAAACCAAAAACCGTGATCGATTATTGTCTTTTTTGTACCAAAAATGATTAAAAA]

[+] EMBL BX624430             [TATCCCCTTCCCTTCCCCCCCATCTCCCTTTAATCCTTTTCCTCTTCTCACCGAAAAAAAAAAACACACACACACACATAACAAATAAAATAAGTAAAATGCTTACAGTAAAGCGGGAGGAAAAGCATGTAAAGAATAAGTAATAGTTAAGCAGCACATTTAGAACTAGACGGCAGGGTGGATGGACGATCGGACGGTAGATGAGAGAAAAGAGATAAATATTAACATTAACAAAAAACAAACAAAAAAACTAGCGAGTAAGAAATTAAAGAAAACACAACCACATACACACATAAGTTAATGAAACACAGAAATGGGATAGGAAACGAAACAAACATTCAAGCTAAACATAACAAAGAAGAAACAGATAAACAGATACAAAAAAAGAGAGAGAGAGAGATAGAGTAAGCCAACAAGGAAAAAGATAACAAACACACAGCAGTAAAAAAGATGCAAACACAAAAATACACAATTCAAAACACACAATGCATACATACATACACAGAACAAACCCCCGAGATTTAAGAATAACGAAAGAGGATACAACAAGAAAAGTAGAAGCAGAAAGTAAAAACNACCACAGAAAAAGAAGAAGAAAACAAACCAAAAAACTCAAACAAACACNCNCAAGAATGAAAAGAGAGAAAAACCAAAACCAAAAACCGTGATCGATTATTGTCTTTTTTGTACCAAAAATGATTAAAAA]




>consensus_3392#0
TATCCCCTTCCCTTCCCCCCCATCTCCCTTTAATCCTTTTCCTCTTCTCACCGAAAAAAA
AAAACACACACACACACATAACAAATAAAATAAGTAAAATGCTTACAGTAAAGCGGGAGG
AAAAGCATGTAAAGAATAAGTAATAGTTAAGCAGCACATTTAGAACTAGACGGCAGGGTG
GATGGACGATCGGACGGTAGATGAGAGAAAAGAGATAAATATTAACATTAACAAAAAACA
AACAAAAAAACTAGCGAGTAAGAAATTAAAGAAAACACAACCACATACACACATAAGTTA
ATGAAACACAGAAATGGGATAGGAAACGAAACAAACATTCAAGCTAAACATAACAAAGAA
GAAACAGATAAACAGATACAAAAAAAGAGAGAGAGAGAGATAGAGTAAGCCAACAAGGAA
AAAGATAACAAACACACAGCAGTAAAAAAGATGCAAACACAAAAATACACAATTCAAAAC
ACACAATGCATACATACATACACAGAACAAACCCCCGAGATTTAAGAATAACGAAAGAGG
ATACAACAAGAAAAGTAGAAGCAGAAAGTAAAAACNACCACAGAAAAAGAAGAAGAAAAC
AAACCAAAAAACTCAAACAAACACNCNCAAGAATGAAAAGAGAGAAAAACCAAAACCAAA
AACCGTGATCGATTATTGTCTTTTTTGTACCAAAAATGATTAAAAA

consensusID : consensus_3392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [AATTATTGTAATCCTATATTAAGGTGTGCGCGAGTGTATGCGGCGTGTGAATGAGAGATATGTGCGAAACAACAAACAAACAAACAAACAAACAAAGGCGAACATTATTCTCCATGCTAATGTGTTAAGAATAATTAAGAAAACAGAAAACACGTGCTAAAAGAAACGTGTATTTTGAAGGAATAATACGGGGAAATGAAAGAGAGAGAGAGAAAAATAAAGAGAAGAGAATAAAACCTACAGATTAATACAAAACCGAACTGTAATGCTAAAGATAAAGCAAAAAAAAAAAGAAGAAAAACTAACCCATTAAACATAATTGCAGAACGTTGAAATACAATTGGTAAAGAAAGAAAAGAAAAACCGATTGAGTTTGCAAAACTGATGCAACTATGTATGTGTACCGGATGACTATTTAGTATTGTTTATTTGTTCCTCTATCCCCTTCCCTTCCCCCCCATCTCCCTTTAATCCTTTTCCT]

[+] EMBL BX610077             [AATTATTGTAATCCTATATTAAGGTGTGCGCGAGTGTATGCGGCGTGTGAATGAGAGATATGTGCGAAACAACAAACAAACAAACAAACAAACAAAGGCGAACATTATTCTCCATGCTAATGTGTTAAGAATAATTAAGAAAACAGAAAACACGTGCTAAAAGAAACGTGTATTTTGAAGGAATAATACGGGGAAATGAAAGAGAGAGAGAGAAAAATAAAGAGAAGAGAATAAAACCTACAGATTAATACAAAACCGAACTGTAATGCTAAAGATAAAGCAAAAAAAAAAAGAAGAAAAACTAACCCATTAAACATAATTGCAGAACGTTGAAATACAATTGGTAAAGAAAGAAAAGAAAAACCGATTGAGTTTGCAAAACTGATGCAACTATGTATGTGTACCGGATGACTATTTAGTATTGTTTATTTGTTCCTCTATCCCCTTCCCTTCCCCCCCATCTCCCTTTAATCCTTTTCCT]




>consensus_3392#1
AATTATTGTAATCCTATATTAAGGTGTGCGCGAGTGTATGCGGCGTGTGAATGAGAGATA
TGTGCGAAACAACAAACAAACAAACAAACAAACAAAGGCGAACATTATTCTCCATGCTAA
TGTGTTAAGAATAATTAAGAAAACAGAAAACACGTGCTAAAAGAAACGTGTATTTTGAAG
GAATAATACGGGGAAATGAAAGAGAGAGAGAGAAAAATAAAGAGAAGAGAATAAAACCTA
CAGATTAATACAAAACCGAACTGTAATGCTAAAGATAAAGCAAAAAAAAAAAGAAGAAAA
ACTAACCCATTAAACATAATTGCAGAACGTTGAAATACAATTGGTAAAGAAAGAAAAGAA
AAACCGATTGAGTTTGCAAAACTGATGCAACTATGTATGTGTACCGGATGACTATTTAGT
ATTGTTTATTTGTTCCTCTATCCCCTTCCCTTCCCCCCCATCTCCCTTTAATCCTTTTCC
T

consensusID : consensus_3392#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [TTTTTTTTAAACCGGTAGGTTTAATCCCCTTCCCTTTATTTTTCCCCCCCCCCCTTTCATTTCCCCGTATAATTCCTTCAAAATACACGTTTCTTTTAGCACGTGTTTTCGGTTTTCTAAATTATCCTAAACACATTAGCATGGAAAAAAATGTCCGCCTTTGTTTGTTTGTTTGTTTGTTTGTTGTTCCGCAAATATCTCTCATTCAAACGCCGCATAAACTCGCGCAAACCTTAATATAGGATTACAATATTTAGAATAATCATGAATCATGAAAAAAATGTGTGTAAGTGTAAGTGTGTT]

[+] EMBL AGA280535            [TTTTTTTTAAACCGGTAGGTTTAATCCCCTTCCCTTTATTTTTCCCCCCCCCCCTTTCATTTCCCCGTATAATTCCTTCAAAATACACGTTTCTTTTAGCACGTGTTTTCGGTTTTCTAAATTATCCTAAACACATTAGCATGGAAAAAAATGTCCGCCTTTGTTTGTTTGTTTGTTTGTTTGTTGTTCCGCAAATATCTCTCATTCAAACGCCGCATAAACTCGCGCAAACCTTAATATAGGATTACAATATTTAGAATAATCATGAATCATGAAAAAAATGTGTGTAAGTGTAAGTGTGTT]




>consensus_3392#2
TTTTTTTTAAACCGGTAGGTTTAATCCCCTTCCCTTTATTTTTCCCCCCCCCCCTTTCAT
TTCCCCGTATAATTCCTTCAAAATACACGTTTCTTTTAGCACGTGTTTTCGGTTTTCTAA
ATTATCCTAAACACATTAGCATGGAAAAAAATGTCCGCCTTTGTTTGTTTGTTTGTTTGT
TTGTTGTTCCGCAAATATCTCTCATTCAAACGCCGCATAAACTCGCGCAAACCTTAATAT
AGGATTACAATATTTAGAATAATCATGAATCATGAAAAAAATGTGTGTAAGTGTAAGTGT
GTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3392#1      ------------------------------------------------------------
consensus_3392#2      ------------------------------------------------------------
consensus_3392#0      TATCCCCTTCCCTTCCCCCCCATCTCCCTTTAATCCTTTTCCTCTTCTCACCGAAAAAAA 60
                                                                                  

consensus_3392#1      ------------------------------------------------------------
consensus_3392#2      ------------------------------------------------------------
consensus_3392#0      AAAACACACACACACACATAACAAATAAAATAAGTAAAATGCTTACAGTAAAGCGGGAGG 120
                                                                                  

consensus_3392#1      ----------------------------------AATTATTGTAATCCTATATTAAGGTG 26
consensus_3392#2      ------------------------------------------------------------
consensus_3392#0      AAAAGCATGTAAAGAATAAGTAATAGTTAAGCAGCACATTTAGAACTAGACGGCAGGGTG 180
                                                                                  

consensus_3392#1      TGCGCGAGTGTATGCGGCGTGTGAATGA---GAGATATGTGCGAA-----ACAACAAACA 78
consensus_3392#2      -----------------------------------------------------------T 1
consensus_3392#0      GATGGACGATCGGACGGTAGATGAGAGAAAAGAGATAAATATTAACATTAACAAAAAACA 240
                                                                                  

consensus_3392#1      AACAAACAAACAAACAAA-GGCGAACATTATTCTCCATGCTAATGTGTTAAGAATAATTA 137
consensus_3392#2      TTTTTTTAAACCGGTAG--GTTTAATCCCCTTCCCTTTATTTTTCCCCCCCCCCCTTTCA 59
consensus_3392#0      AACAAAAAAACTAGCGAGTAAGAAATTAAAGAAAACACAACCACATACACACATAAGTTA 300
                             ****            **                                * *

consensus_3392#1      AGAAAACAGAAAACACG--TGCTAAAAGAAACGTGTATTTTGA--AGGAATAATACGGGG 193
consensus_3392#2      TTTCCCCGTATAATTCC--TTC-AAAATACACGTTTCTTTT-A--GCACGTGTTTTCGGT 113
consensus_3392#0      ATGAAACACAGAAATGGGATAGGAAACGAAACAAACATTCAAGCTAAACATAACAAAGAA 360
                            *  * **      *   ***  * **     **           *      *  

consensus_3392#1      AAATGAAAGAGAGAGAGAGAAAAATAAAGAGAAGAGAATA------AAACCTACAGATTA 247
consensus_3392#2      TTTCTAAATTATCCTAAACACATTAGCATGGAAAAAAATG------TCCGCCTTTGTTTG 167
consensus_3392#0      GAAACAGATAAACAGATACAAAAAAAGAGAGAGAGAGAGATAGAGTAAGCCAACAAGGAA 420
                           * *       * * * *     *  **     *            *         

consensus_3392#1      ATACAAAACCGAACTGTAATGCTAAAGATAAAGCAAAAAAAAAAAGA-AGAA----AAAC 302
consensus_3392#2      TTTGTTTGTTTGTTTGTTGTTCCGCAAATATCTCTCATTCAAACGCC-GCAT----AAAC 222
consensus_3392#0      AAAGATAACAAACACACAGCAGTAAAAAAGATGCAAACACAAAAATACACAATTCAAAAC 480
                                               * *     *  *   ***       *     ****

consensus_3392#1      TAACCCATTAAACATAATTGCA--GAACGT-----TGAAATACA--ATTGGTAAAGAAAG 353
consensus_3392#2      TCGCGC---AAACCTTAATATA--GGATTA-----CAATATTTAG-AATAATCATGAATC 271
consensus_3392#0      ACACAATGCATACATACATACACAGAACAAACCCCCGAGATTTAAGAATAACGAAAGAGG 540
                         *     * ** *   *  *  * *          * **  *  * *    *   *  

consensus_3392#1      AAAAGAAAAACCGATTGAGTTTGCAAAACTGATGCAACTAT-GTATGTGTACCGGATGAC 412
consensus_3392#2      ATGAAAAAAAT-GTGTGTAAGTGTAAGTGTGTT--------------------------- 303
consensus_3392#0      ATACAACAAGAAAAGTAGAAGCAGAAAGTAAAAACNACCACAGAAAAAGAAGAAGAAAAC 600
                      *    * **      *        **                                  

consensus_3392#1      TATTTAGTATTGTTTATTTGTTCCTCTATCCCCTTCCCTTCCCCCCCATCTCCCTTTAAT 472
consensus_3392#2      ------------------------------------------------------------
consensus_3392#0      AAACCAAAAAACTCAAACAAACACNCNCAAGAATGAAAAGAGAGAAAAACCAAAACCAAA 660
                                                                                  

consensus_3392#1      CCTTTTCCT------------------------------------- 481
consensus_3392#2      ----------------------------------------------
consensus_3392#0      AACCGTGATCGATTATTGTCTTTTTTGTACCAAAAATGATTAAAAA 706