These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 331 fasta sequence [GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTTATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCAGGTACCGTATGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGAGCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGTCTGTTTGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAAGCTCGAGTCCGTCTTGAAGGCCTTGTACGCT] [+] EMBL AGA280949 [GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTTATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCAGGTACCGTATGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGAGCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGTCTGTTTGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAAGCTCGAGTCCGTCTTGAAGGCCTTGTACGCT] [+] EMBL AGA280567 [GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTTATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCAGGTACCGTAGGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGAGCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGTCTGTATGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAAGCTC ] consensusID : consensus_3395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GATCTACTTGCTCATAGACTGGGTCTGGAATTCTTCGCGTGTCTTGCCCATCGTAATCTTATCGCCCGAGCGGAAGTTTTGGTGTATCTTGATCAGCATGATTATGTTGCCCGCAACGCAGGTACCGTAGTGAAGTGCTATGCACATCAGGAACATGCCATCGACCATGCCCTAGACCGAGCTGATCTGGCTGATGGCCATGATGACGCCGCACGTGCCCGTCCCGGGGAACCCGATCGTCTGTATGGTGGTCAC] [+] EMBL AGA280687 [GATCTACTTGCTCATAGACTGGGTCTGGAATTCTTCGCGTGTCTTGCCCATCGTAATCTTATCGCCCGAGCGGAAGTTTTGGTGTATCTTGATCAGCATGATTATGTTGCCCGCAACGCAGGTACCGTAGTGAAGTGCTATGCACATCAGGAACATGCCATCGACCATGCCCTAGACCGAGCTGATCTGGCTGATGGCCATGATGACGCCGCACGTGCCCGTCCCGGGGAACCCGATCGTCTGTATGGTGGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3395#0 GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTT 60 consensus_3395#1 GATCTACTTGCTCATAGACTGGGTCTGGAATTCTTCGCGTGTCTTGCCCATCGTAATCTT 60 **** * ********* ***** ****************** ************ ***** consensus_3395#0 ATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCA 120 consensus_3395#1 ATCGCCCGAGCGGAAGTTTTGGTGTATCTTGATCAGCATGATTATGTTGCCCGCAACGCA 120 ************* ** ************** ********* ************* **** consensus_3395#0 GGTACCGTATGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGA 180 consensus_3395#1 GGTACCGTAGTGAAGTGCTATGCACATCAGGAACATGCCATCGACCATGCCCTAGACCGA 180 ********* *********************** **** **** * **** ** **** consensus_3395#0 GCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGT 240 consensus_3395#1 GCTGATCTGGCTGATGGCCATGATGACGCCGCACGTGCCCGTCCCGGGGAACCCGATCGT 240 ***** *********************************** ***************** consensus_3395#0 CTGTTTGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAA 300 consensus_3395#1 CTGTATGGTGGTCAC--------------------------------------------- 255 **** ********** consensus_3395#0 GCTCGAGTCCGTCTTGAAGGCCTTGTACGCT 331 consensus_3395#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||