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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 955 fasta sequence
[CCTGCCTGTCTACCCCATTCGGAGTGAAAAACACAATGTTTTCTTACAAACAAGATTTACTAAAAATAGCGTGTAATCTATATTGAATTGTAGCCTCTCCTAAGTAATTTTCGTGTGTTGCATTACATCATCATGCATTTTAAACTGTTGCTTTTGGAGGAAGAGAATGGTCTTAATTATCGTTATACGATACATATGATTGCTGGAATTTCACCACACTGAGTTGAAACGTGTGCTGCTACTACTAGCAGTGTAACTTATCATTAAAGGGGCACAACTGAACATTGCAAGCTGCTTCCAACATGCATTTTAAGCAAATATTATACAACACATCGCAAAAAATGCATTGAGCAAAACTTAAAGCTAACTTTTGTTTGATTCTCATTTAGTATTCATTGAAATTAACAATTGTGCATTTTTTTTTAAATTAAGTTTGTTTCATTTATGCAGAATTCACAGAAGTTTTTTTTAGTACCCGAATTGATTTCATATTGCTGACCATTCACCGACACAGTGTGTGAGGTATCATTGTGTGGATTAAGGCTACTCTCGAAAAGAAAAGTGGAACAAAAAGGTCGTCGCGGTGTAGCTAATGTTGAAGCATACAAATTAGATTCTAGTACTCAACTCCTGCGTGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAAAAAAAAGAAAACCCCTTTGTGATGGAGGTGATTACACAAAACACATCAAATGTTTGAAAACGATATTTTGGCCGAAGCAAAACCATGTGTGTGAGTGCATATGGCAAAATGGAACCAGTTATTAGGCTTAAAAAAGGAATACAGAGAGGAGACGTAATATGCAAAGTAAAAA]
[-] EMBL AGA280613 [CCTGCCTGTCTACCCCATTCGGAGTGAAAAACACAATGTTTTCTTACAAACAAGATTTACTAAAAATAGCGTGTAATCTATATTGAATTGTAGCCTCTCCTAAGTAATTTTCGTGTGTTGCATTACATCATCATGCATTTTAAACTGTTGCTTTTGGAGGAAGAGAATGGTCTTAATTATCGTTATACGATACATATGATTGCTGGAATTTCACCACACTGAGTTGAAACGTGTGCTGCTACTACTAGCAGTGTAACTTATCATTAAAGGGGCACAACTGAACATTGCAAGCTGCTTCCAACATGCATTTTAAGCAAATATTATACAACACATCGCAAAAAATGCATTGAGCAAAACTTAAAGCTAACTTTTGTTTGATTCTCATTTAGTATTCATTGAAATT ]
[+] EMBL BX624387 [ ATGCATTGAGCAAAACTTAAAGCTAATTTTTGTTTGATTCTCATTTAGTATTCATTGAAATTAACAATTGTGCATTTTTTTTTAAATTAAGTTTGTTTCATTTATGCAGAATTCACAGAAGTTTTTTTTAGTACCCGAATTGATTTCATATTGCTGACCATTCACCGACACAGTGTGTGAGGTATCATTGTGTGGATTAAGGCTACTCTCGAAAAGAAAAGTGGAACAAAAAGGTCGTCGCGGTGTAGCTAATGTTGAAGCATACAAATTAGATTCTAGTACTCAACTCCTGCGTGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAAAAAAAAGAAAACCCCTTTGTGATGGAGGTGATTACACAAAACACATCAAATGTTTGAAAACGATATTTTGGCCGAAGCAAAACCATGTGTGTGAGTGCATATGGCAAAATGGAACCAGTTATTAGGCTTAAAAAAGGAATACAGAGAGGAGACGTAATATGCAAAGTAAAAA]
consensusID : consensus_3400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence
[CAGAATCGGCACGAGGCCTNTATGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAACAAAAAAGAAAACCCCTCTTGCTGATGGAGGTGATTACACACAAACACATCAAGAGTGCTTTGANAACGACTATTNTGGCCGA]
[+] EMBL BX466320 [CAGAATCGGCACGAGGCCTNTATGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAACAAAAAAGAAAACCCCTCTTGCTGATGGAGGTGATTACACACAAACACATCAAGAGTGCTTTGANAACGACTATTNTGGCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3400#0 CCTGCCTGTCTACCCCATTCGGAGTGAAAAACACAATGTTTTCTTACAAACAAGATTTAC 60
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 TAAAAATAGCGTGTAATCTATATTGAATTGTAGCCTCTCCTAAGTAATTTTCGTGTGTTG 120
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 CATTACATCATCATGCATTTTAAACTGTTGCTTTTGGAGGAAGAGAATGGTCTTAATTAT 180
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 CGTTATACGATACATATGATTGCTGGAATTTCACCACACTGAGTTGAAACGTGTGCTGCT 240
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 ACTACTAGCAGTGTAACTTATCATTAAAGGGGCACAACTGAACATTGCAAGCTGCTTCCA 300
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 ACATGCATTTTAAGCAAATATTATACAACACATCGCAAAAAATGCATTGAGCAAAACTTA 360
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 AAGCTAACTTTTGTTTGATTCTCATTTAGTATTCATTGAAATTAACAATTGTGCATTTTT 420
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 TTTTAAATTAAGTTTGTTTCATTTATGCAGAATTCACAGAAGTTTTTTTTAGTACCCGAA 480
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 TTGATTTCATATTGCTGACCATTCACCGACACAGTGTGTGAGGTATCATTGTGTGGATTA 540
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 AGGCTACTCTCGAAAAGAAAAGTGGAACAAAAAGGTCGTCGCGGTGTAGCTAATGTTGAA 600
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 GCATACAAATTAGATTCTAGTACTCAACTCCTGCGTGTGTCGTACGGTAGATTATGGTGG 660
consensus_3400#1 ----------CAGAATCGG---CACGAGGCCTNTATGTGTCGTACGGTAGATTATGGTGG 47
*** ** * * * *** *************************
consensus_3400#0 AGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAA 720
consensus_3400#1 AGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAA 107
************************************************************
consensus_3400#0 GAAGACGAGGAAAACAAAAAGAAACCAG-TTTAGTGTGTGAAAACGTTATATACAAAGCT 779
consensus_3400#1 GAAGACGAGGAAAACAAAAAGAAACCAGGTTTAGTGTGTGAAAACGTTATATACAAAGCT 167
**************************** *******************************
consensus_3400#0 AAAA-AAAAAAGAAAACCCCTTTG--TGATGGAGGTGATTACACA-AAACACATCAAATG 835
consensus_3400#1 AAAACAAAAAAGAAAACCCCTCTTGCTGATGGAGGTGATTACACACAAACACATCAAGAG 227
**** **************** * ******************* *********** *
consensus_3400#0 T---TTGAAAACGA-TATTTTGGCCGAAGCAAAACCATGTGTGTGAGTGCATATGGCAAA 891
consensus_3400#1 TGCTTTGANAACGACTATTNTGGCCGA--------------------------------- 254
* **** ***** **** *******
consensus_3400#0 ATGGAACCAGTTATTAGGCTTAAAAAAGGAATACAGAGAGGAGACGTAATATGCAAAGTA 951
consensus_3400#1 ------------------------------------------------------------
consensus_3400#0 AAAA 955
consensus_3400#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||