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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[GGCTTCTTCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGTATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAAATCATCAACTGTGTATCAAAGCAAAAGAATAGCGCTTTCGGTGGTAACTTGGTGAAGCGTTCCACAAGCGCTCCGTATCTGCAGTAACGCTTCGACGGCCCACAGTATGGCCTACCTTTCCGATGTAGATCTCGCAACGCTACACCAGTCACGCCTCGAGGAGCGCGTACAGTATCGGCTGTCGGCGCTTTGGACGCACGGAGCGGAATCGGGCCGGGATTATCAGCGATCGTTACCAGCAGTGTCGTCATCCGCGTCATCGTCGAGCACGTCATTAACAATGTTTG]
[+] EMBL BX626630 [GGCTTCTTCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGTATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAAATCATCAACTGTGTATCAAAGCAAAAGAATAGCGCTTTCGGTGGTAACTTGGTGAAGCGTTCCACAAGCGCTCCGTATCTGCAGTAACGCTTCGACGGCCCACAGTATGGCCTACCTTTCCGATGTAGATCTCGCAACGCTACACCAGTCACGCCTCGAGGAGCGCGTACAGTATCGGCTGTCGGCGCTTTGGACGCACGGAGCGGAATCGGGCCGGGATTATCAGCGATCGTTACCAGCAGTGTCGTCATCCGCGTCATCGTCGAGCACGTCATTAACAATGTTTG]
consensusID : consensus_3457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[AGAATTCCGCACGANTGTAGGAGAGGATGTAGTGGCTTCTNCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCGTGGTTGTTGATCCCCGAGCGTCCGTTATTATGCTCCAAAGCCAAAGACCACAGTGTGTATGTGTGTGCGTGCCGACATGGGCAGTGTGAAGGTGGAGGTTGGTTAACCGCCGGTGGGCCGGAANAAAGTTCATTCCACGCCTGGTGGTTCATTCCAGGAGGGCNCAAANGGAACTTAGCCGGCCNTTCTCCCGAGNTGGGGTAAACTTTGGGGNTGAAACGCNGGTTCCCAAGCAAAGGCACGGCCTCACGGATATTCCTCGGCCAGGNGAAGCGNANTTCCGAAACNGGGACCCCACCAAGGAG]
[+] EMBL BX469765 [AGAATTCCGCACGANTGTAGGAGAGGATGTAGTGGCTTCTNCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCGTGGTTGTTGATCCCCGAGCGTCCGTTATTATGCTCCAAAGCCAAAGACCACAGTGTGTATGTGTGTGCGTGCCGACATGGGCAGTGTGAAGGTGGAGGTTGGTTAACCGCCGGTGGGCCGGAANAAAGTTCATTCCACGCCTGGTGGTTCATTCCAGGAGGGCNCAAANGGAACTTAGCCGGCCNTTCTCCCGAGNTGGGGTAAACTTTGGGGNTGAAACGCNGGTTCCCAAGCAAAGGCACGGCCTCACGGATATTCCTCGGCCAGGNGAAGCGNANTTCCGAAACNGGGACCCCACCAAGGAG]
consensusID : consensus_3457#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[CCGCGTTTCAGTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGACTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGAATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAA]
[+] EMBL BM616793 [CCGCGTTTCAGTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGACTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGAATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3457#0 ---------------------------------GGCTTCTTCGGTTTTACCAGTTCGTCG 27
consensus_3457#2 ------------------------------------------------------------
consensus_3457#1 AGAATTCCGCACGANTGTAGGAGAGGATGTAGTGGCTTCTNCGGTTTTACCAGTTCGTCG 60
consensus_3457#0 TCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCC 87
consensus_3457#2 --------------CCGCGTTTCAGTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCC 46
consensus_3457#1 TCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCC 120
**** ***********************************
consensus_3457#0 CTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAG 147
consensus_3457#2 CTGAGCTTGACTCGAATTAATAAGACTGTTTGACTGCCGAAGCACAGAACCTCCAGCAAG 106
consensus_3457#1 CTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAG 180
******************************** ***************************
consensus_3457#0 GCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTC 207
consensus_3457#2 GCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTC 166
consensus_3457#1 GCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTC 240
************************************************************
consensus_3457#0 TATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGA 267
consensus_3457#2 TATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGA 226
consensus_3457#1 TATTTGCAAACCGTGCGGC-AATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGA 299
******************* ****************************************
consensus_3457#0 TTACCCCGCCGTGTTGTTGATCCCCGAGC-TCCGTTATTATGCTCCAAA-CCAAAGACCA 325
consensus_3457#2 TTACCCCGCCGTGTTGTTGATCCCCGAGC-TCCGTTATTATGCTCCAAA-CCAAAGACCA 284
consensus_3457#1 TTACCCCGCGTGGTTGTTGATCCCCGAGCGTCCGTTATTATGCTCCAAAGCCAAAGACCA 359
********* ***************** ******************* **********
consensus_3457#0 CAGTGTGTATGTGTGTGCGTGCGAA--TGGGCAGTGTGAGTGAGTGTACGCGGTGCGAAA 383
consensus_3457#2 CAGTGTGAATGTGTGTGCGTGCGAA--TGGGCAGTGTGAGTGAGTGTACGCGGTGCGAA- 341
consensus_3457#1 CAGTGTGTATGTGTGTGCGTGCCGACATGGGCAGTGTGAA-----------GGTGGAGGT 408
******* ************** * ************ ****
consensus_3457#0 TCATCAACTGTGTATCAAAGCAAAAGAATAGCGCTTTCGGTGGTAACTTGGTGAAGCGTT 443
consensus_3457#2 ------------------------------------------------------------
consensus_3457#1 TGGTTAACCGCCGGT--GGGCCGGAANAAAGTTCATTCCACG----CCTGGTGGTTCATT 462
consensus_3457#0 CCACAAGCGCTCCGTATCTGCAGTAACGCTTCGACGGCCCACAGTATGGCCTACCTTTCC 503
consensus_3457#2 ------------------------------------------------------------
consensus_3457#1 CCAGGAGGGCNCA--------AANGGAACTTAGCCGGCC--------NTTCTCCCGAGNT 506
consensus_3457#0 GATGTAGA-TCTCGCAACGCTACACCAGTCACGCCTCGAGGAGCGCGTACAGTATCGGCT 562
consensus_3457#2 ------------------------------------------------------------
consensus_3457#1 GGGGTAAACTTTGGGGNTGAAACGCNGGTT----CCCAAGCAAAG-GCACGGCCTCACGG 561
consensus_3457#0 GTCGGCGCTTTGGACGCACGGAGCGGAATCGGGCCGGGATTATCAGCGATCGTTACCAGC 622
consensus_3457#2 ------------------------------------------------------------
consensus_3457#1 AT--ATTCCTCGGCCAGGNGAAGCGNANTT---CCGAAA----CNGGGACCCCACCAAGG 612
consensus_3457#0 AGTGTCGTCATCCGCGTCATCGTCGAGCACGTCATTAACAATGTTTG 669
consensus_3457#2 -----------------------------------------------
consensus_3457#1 AG--------------------------------------------- 614
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||