cluster # 3465

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Anopheles gambiae
cluster # 3465 cluster # 3465 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3465#0 length = 906 sequences # 2

consensus_3465#1 length = 888 sequences # 1

consensusID : consensus_3465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 906
fasta sequence

                              [AGAATCGGCACAGGGTTGTNTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTACTTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAAACAGGAAAATTGACTTTTAAATCAACCATCCGGTTGCGAACAACCTCAATTCACCTCATTATCCACGCTGCTCCTCGT-AACTCCTTCGTAACTTNCAGTTACAAATGAATCGGTGAACCCTGACAAAACG-GTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAGAAAGGAATATAGACCTTAAGACGAGATGAACAAATCACGCGGAAATGGACAGGAAT]

[+] EMBL BX466440             [AGAATCGGCACAGGGTTGTNTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTACTTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAAACAGGAAAATTGACTTTTAAATCAACCATCCGGTTGCGAACAACCTCAATTCACCTCATTATCCACGCTGCTCCTCGT AACTCCTTCGTAACTTNCAGTTACAAATGAATCGGTGAACCCTGACAAAACG G                                                                                                                           ]
[+] EMBL BX611840             [                                                                                                                                                                                                                                                                    GCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTA TTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAGACAGG AAATTGACTTTTAAATCAA CATCCGGTT CGAACAA CTCAATTCA CTCATTATTCACGCTGCTCCTCGTAAACTCCTTCGT ACTT GAGTTA AAATG ATC GTGAA CCTGAC AAACGTTTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAGAAAGGAATATAGACCTTAAGACGAGATGAACAAATCACGCGGAAATGGACAGGAAT]




>consensus_3465#0
AGAATCGGCACAGGGTTGTNTAATTCTAATATACGTACATTTGTTATACGACGATCCCCG
AGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGT
CAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAAT
GTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTT
GCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACAC
ACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATA
GTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATT
GGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGC
GCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTA
CAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTACTTAT
GGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAAACAGGAAA
ATTGACTTTTAAATCAACCATCCGGTTGCGAACAACCTCAATTCACCTCATTATCCACGC
TGCTCCTCGTAACTCCTTCGTAACTTNCAGTTACAAATGAATCGGTGAACCCTGACAAAA
CGGTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGC
GAAAAAAAAGAAAGGAATATAGACCTTAAGACGAGATGAACAAATCACGCGGAAATGGAC
AGGAAT

consensusID : consensus_3465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 888
fasta sequence

                              [TATCCTAATTGTTTCTTTAAAAATACTGTTCTTCTGCTTCCCCGTCTCTGTTGCTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTATTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAGACAGGAAATTGACTTTTAAATCAACATCCGGTTCGAACAACTCAATTCACTCATTATTCACGCTGCTCCTCGTAAACTCCTTCGTACTTGAGTTAAAATGATCGTGAACCTGACAAACGTTTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AGA281554            [TATCCTAATTGTTTCTTTAAAAATACTGTTCTTCTGCTTCCCCGTCTCTGTTGCTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTATTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAGACAGGAAATTGACTTTTAAATCAACATCCGGTTCGAACAACTCAATTCACTCATTATTCACGCTGCTCCTCGTAAACTCCTTCGTACTTGAGTTAAAATGATCGTGAACCTGACAAACGTTTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3465#1
TATCCTAATTGTTTCTTTAAAAATACTGTTCTTCTGCTTCCCCGTCTCTGTTGCTAATTC
TAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACT
GTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCA
GCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAA
TGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAAC
AAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGAC
CTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGT
AAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAA
GACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTAT
TGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAA
TAAACTGGGAAGCGATTATGATTTACGTATTATGGGAGAATCAATCCGCTTTACTTTTCT
TCTTATTCGTTACATCGTCCAGCAGACAGGAAATTGACTTTTAAATCAACATCCGGTTCG
AACAACTCAATTCACTCATTATTCACGCTGCTCCTCGTAAACTCCTTCGTACTTGAGTTA
AAATGATCGTGAACCTGACAAACGTTTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGT
ATCGCTTTGAATTGAGCTATTGCGAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3465#0      ----------------------------------AGAATCGGCACAGGGTTGTNTAATTC 26
consensus_3465#1      TATCCTAATTGTTTCTTTAAAAATACTGTTCTTCTGCTTCCCCGTCTCTGTTGCTAATTC 60
                                                         *  **  *       *   ******

consensus_3465#0      TAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACT 86
consensus_3465#1      TAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACT 120
                      ************************************************************

consensus_3465#0      GTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCA 146
consensus_3465#1      GTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCA 180
                      ************************************************************

consensus_3465#0      GCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAA 206
consensus_3465#1      GCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAA 240
                      ************************************************************

consensus_3465#0      TGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAAC 266
consensus_3465#1      TGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAAC 300
                      ************************************************************

consensus_3465#0      AAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGAC 326
consensus_3465#1      AAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGAC 360
                      ************************************************************

consensus_3465#0      CTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGT 386
consensus_3465#1      CTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGT 420
                      ************************************************************

consensus_3465#0      AAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAA 446
consensus_3465#1      AAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAA 480
                      ************************************************************

consensus_3465#0      GACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTAT 506
consensus_3465#1      GACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTAT 540
                      ************************************************************

consensus_3465#0      TGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAA 566
consensus_3465#1      TGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAA 600
                      ************************************************************

consensus_3465#0      TAAACTGGGAAGCGATTATGATTTACGTACTTATGGGAGAATCAATCCGCTTTACTTTTC 626
consensus_3465#1      TAAACTGGGAAGCGATTATGATTTACGTA-TTATGGGAGAATCAATCCGCTTTACTTTTC 659
                      ***************************** ******************************

consensus_3465#0      TTCTTATTCGTTACATCGTCCAGCAAACAGGAAAATTGACTTTTAAATCAACCATCCGGT 686
consensus_3465#1      TTCTTATTCGTTACATCGTCCAGCAGACAGGAAA-TTGACTTTTAAATCAAC-ATCCGGT 717
                      ************************* ******** ***************** *******

consensus_3465#0      TGCGAACAACCTCAATTCACCTCATTATCCACGCTGCTCCTCGTAA-CTCCTTCGTAACT 745
consensus_3465#1      T-CGAACAAC-TCAATTCAC-TCATTATTCACGCTGCTCCTCGTAAACTCCTTCGTA--C 772
                      * ******** ********* ******* ***************** **********   

consensus_3465#0      TNCAGTTACAAATGAATCGGTGAACCCTGACAAAACGGTTAGTTTAAAGATCTAAGCATA 805
consensus_3465#1      TTGAGTTA-AAATGA--TCGTGAACC-TGACAAACGTTTTAGTTTAAAGATCTAAGCATA 828
                      *  ***** ******    ******* *******    **********************

consensus_3465#0      AGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAGAAAGGAATATAGACC 865
consensus_3465#1      AGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAAAAAAAAAAAAAAAAA 888
                      ******************************************** ***  ** * * *  

consensus_3465#0      TTAAGACGAGATGAACAAATCACGCGGAAATGGACAGGAAT 906
consensus_3465#1      -----------------------------------------