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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence
[TNCCCCCTGCAGGTTATANATCTGCCGGTATCTCACCATGCGTTTGATGATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGANTATATGCATCATGCAACAATGAAGCAAAACACAACATACAAAGTAAATGATAACACTTGTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCTGGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATGGCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGCATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCACACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCTGCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATANNACTAGACCAAACCACTATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATATCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGTTAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAANCACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC]
[+] EMBL AL696172 [TNCCCCCTGCAGGTTATANATCTGCCGGTATCTCACCATGCGTTTGATGATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGANTATATGCATCATGCAACAATGAAGCAAAACACAACATACAAAGTAAATGATAACACTTGTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCTGGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATGGCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGCATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCACACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCTGCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATANNACTAGACCAAACCACTATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATATCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGTTAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAANCACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC]
consensusID : consensus_3489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGGATCTGTTCCATTCGAAAGCTTACAATTCGTAAACGACTTTCCCTCTTCTAACACGTGCAAGCATCTCCGAGGGGTTAACATTACAGTTTCCCCTTATGCAGATGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGATGTTAAATGCAATACATATACACACCGAAACACACATACTTATATATCGCTAAT]
[-] EMBL AGA282099 [GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGG ]
[+] EMBL BM620868 [ ccgCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGGATCTGTTCCATTCGAAAGCTTACAATTCGTAAACGACTTTCCCTCTTCTAACACGTGCAAGCATCTCCGAGGGGTTAACATTACAGTTTCCCCTTATGCAGATGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGATGTTAAATGCAATACATATACACACCGAAACACACATACTTATATATCGCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3489#0 -------TNCCCCCTGCAGGTTAT----ANATCT-GCCGGTATCTCACCATGCGTTTGAT 48
consensus_3489#1 GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGAT 60
* * **** ** * ** * ***** ******************
consensus_3489#0 GATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGA 108
consensus_3489#1 GATGTC-CATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGT-TTCCACGGGGTAAGA 118
***** ************************************* * ** ** ******
consensus_3489#0 NTATATGCATCATGCAACAATGAAGCAAAACACAACATACAA-AGTAAATGATAACACTT 167
consensus_3489#1 ATGTATGCATCATGCAACAA-GAAGCAACA-ACAACATACAACACTAAATGATAACACTT 176
* ***************** ******* * *********** * ***************
consensus_3489#0 GTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCT 227
consensus_3489#1 GTAAAAAA--AGGGATGTGGTGTAGTAGCCAACA------TCCA--CAACACACCCC--- 223
******* ******************* * * **** *** ** ***
consensus_3489#0 GGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATG 287
consensus_3489#1 -GGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTG 282
** * * * *** * * *** * * * * **
consensus_3489#0 GCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGC 347
consensus_3489#1 -CTCCTCCTGCTTC-ACAAGCCTGCGGAAGAGA---AATGTAGCATCAATGTGATAGAAA 337
* * *** * * * * ** ** * * ** ** * *
consensus_3489#0 ATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCA 407
consensus_3489#1 GCTGCACACAAAATCAC--ACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTT 395
* **** *** * ** ** * * ****** * * *
consensus_3489#0 CACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCT 467
consensus_3489#1 TGCTATTGGATCTG-TTCCATTCGAAAGCTTACAATT----CGTAAACGACTTTCCCTCT 450
* * * * * ** * **** *** * * * ** *** **
consensus_3489#0 GCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATA 527
consensus_3489#1 TC--TAACACGTGCAAGCATCTCCGAGGGGTTAACAT-TACA-GTTTCCCCTTATGCAGA 506
* * * ** ** * ** * *** * * * * ** *
consensus_3489#0 NNACTAGACCAAACCAC-TATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATA 586
consensus_3489#1 TGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGA---TGTTAAATGCAATACATA 563
* **** * * * * ** * ** ** ** * *****
consensus_3489#0 TCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGT 646
consensus_3489#1 TACACACCGA---AACACACATACTTATATATCGCTAAT--------------------- 599
* *** * * * * *** * * *
consensus_3489#0 TAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAAN 706
consensus_3489#1 ------------------------------------------------------------
consensus_3489#0 CACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC 747
consensus_3489#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||