These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [TNCCCCCTGCAGGTTATANATCTGCCGGTATCTCACCATGCGTTTGATGATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGANTATATGCATCATGCAACAATGAAGCAAAACACAACATACAAAGTAAATGATAACACTTGTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCTGGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATGGCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGCATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCACACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCTGCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATANNACTAGACCAAACCACTATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATATCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGTTAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAANCACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC] [+] EMBL AL696172 [TNCCCCCTGCAGGTTATANATCTGCCGGTATCTCACCATGCGTTTGATGATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGANTATATGCATCATGCAACAATGAAGCAAAACACAACATACAAAGTAAATGATAACACTTGTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCTGGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATGGCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGCATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCACACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCTGCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATANNACTAGACCAAACCACTATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATATCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGTTAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAANCACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC] consensusID : consensus_3489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGGATCTGTTCCATTCGAAAGCTTACAATTCGTAAACGACTTTCCCTCTTCTAACACGTGCAAGCATCTCCGAGGGGTTAACATTACAGTTTCCCCTTATGCAGATGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGATGTTAAATGCAATACATATACACACCGAAACACACATACTTATATATCGCTAAT] [-] EMBL AGA282099 [GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGG ] [+] EMBL BM620868 [ ccgCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGGATCTGTTCCATTCGAAAGCTTACAATTCGTAAACGACTTTCCCTCTTCTAACACGTGCAAGCATCTCCGAGGGGTTAACATTACAGTTTCCCCTTATGCAGATGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGATGTTAAATGCAATACATATACACACCGAAACACACATACTTATATATCGCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3489#0 -------TNCCCCCTGCAGGTTAT----ANATCT-GCCGGTATCTCACCATGCGTTTGAT 48 consensus_3489#1 GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGAT 60 * * **** ** * ** * ***** ****************** consensus_3489#0 GATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGA 108 consensus_3489#1 GATGTC-CATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGT-TTCCACGGGGTAAGA 118 ***** ************************************* * ** ** ****** consensus_3489#0 NTATATGCATCATGCAACAATGAAGCAAAACACAACATACAA-AGTAAATGATAACACTT 167 consensus_3489#1 ATGTATGCATCATGCAACAA-GAAGCAACA-ACAACATACAACACTAAATGATAACACTT 176 * ***************** ******* * *********** * *************** consensus_3489#0 GTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCT 227 consensus_3489#1 GTAAAAAA--AGGGATGTGGTGTAGTAGCCAACA------TCCA--CAACACACCCC--- 223 ******* ******************* * * **** *** ** *** consensus_3489#0 GGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATG 287 consensus_3489#1 -GGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTG 282 ** * * * *** * * *** * * * * ** consensus_3489#0 GCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGC 347 consensus_3489#1 -CTCCTCCTGCTTC-ACAAGCCTGCGGAAGAGA---AATGTAGCATCAATGTGATAGAAA 337 * * *** * * * * ** ** * * ** ** * * consensus_3489#0 ATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCA 407 consensus_3489#1 GCTGCACACAAAATCAC--ACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTT 395 * **** *** * ** ** * * ****** * * * consensus_3489#0 CACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCT 467 consensus_3489#1 TGCTATTGGATCTG-TTCCATTCGAAAGCTTACAATT----CGTAAACGACTTTCCCTCT 450 * * * * * ** * **** *** * * * ** *** ** consensus_3489#0 GCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATA 527 consensus_3489#1 TC--TAACACGTGCAAGCATCTCCGAGGGGTTAACAT-TACA-GTTTCCCCTTATGCAGA 506 * * * ** ** * ** * *** * * * * ** * consensus_3489#0 NNACTAGACCAAACCAC-TATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATA 586 consensus_3489#1 TGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGA---TGTTAAATGCAATACATA 563 * **** * * * * ** * ** ** ** * ***** consensus_3489#0 TCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGT 646 consensus_3489#1 TACACACCGA---AACACACATACTTATATATCGCTAAT--------------------- 599 * *** * * * * *** * * * consensus_3489#0 TAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAAN 706 consensus_3489#1 ------------------------------------------------------------ consensus_3489#0 CACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC 747 consensus_3489#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||