cluster # 3493

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Anopheles gambiae
cluster # 3493 cluster # 3493 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3493#0 length = 665 sequences # 2

consensus_3493#1 length = 164 sequences # 1

consensusID : consensus_3493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGGAAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACCACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCAAGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGATTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATCTGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATCGGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATTGTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTTAGTTA]

[+] EMBL BX616458             [AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGGAAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACCACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCAAGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGATTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATCTGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGG                                                                                                                                                                                                                            ]
[+] EMBL AGA282250            [                                                                                                                                                                                                                                                                                                         ATCTGTGATTTTTTTCTACTTGAGCTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATCGGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATTGTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTTAGTTA]




>consensus_3493#0
AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGG
AAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACC
ACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCA
AGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGA
TTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATC
TGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCC
TTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTC
CCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATC
GGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATT
GTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAA
AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTT
AGTTA

consensusID : consensus_3493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA]

[+] EMBL AGA285167            [GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA]




>consensus_3493#1
GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAA
CTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCC
GATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3493#0      AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGG 60
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      AAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACC 120
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      ACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCA 180
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      AGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGA 240
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      TTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATC 300
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      TGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCC 360
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      TTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTC 420
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      CCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATC 480
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      GGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATT 540
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      GTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAA 600
consensus_3493#1      ----------------GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAA 44
                                      ***************** **************** ** ******

consensus_3493#0      AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACG-ATGTTCCACTCT 659
consensus_3493#1      AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCG 104
                      *************************************** ******* ********* * 

consensus_3493#0      TAGTTA------------------------------------------------------ 665
consensus_3493#1      TATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA 164
                      ** ***