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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 701 fasta sequence
[CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAACTCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA]
[+] EMBL BM645908 [CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTC ]
[+] EMBL BM596194 [ ccgatcGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATCATCGTTTAAGAAGTTTGAGCGCCATTTTTTGCGTATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAACTCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA]
consensusID : consensus_3499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATGCGCTACTGCTCGTCTGGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCAAATCGGTGGCTTTATCGTCGGATTACTGGACAAATAGTAGTACCAACACTCACTATATGGCCCTAACTGGACACTTCATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTGGAATGCTCTGAAATTCCAAGCGATTTTAGCGAAGAAAACATCGCCCAATGGGTTTCGAAGGTAATGAAGCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAAAATTCCCGCATGGCCAAAGCTGCGGATGACTATACGAATCTTAGGCGGCTGCCATGCTTTGCCCACAGCCTGAACCAAATCGTGCAGGAA]
[+] EMBL BM585835 [CCGCCCACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATGCGCTACTGCTCGTCTGGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCAAATCGGTGGCTTTATCGTCGGATTACTGGACAAATAGTAGTACCAACACTCACTATATGGCCCTAACTGGACACTTCATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTGGAATGCTCTGAAATTCCAAGCGATTTTAGCGAAGAAAACATCGCCCAATGGGTTTCGAAGGTAATGAAGCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAAAATTCCCGCATGGCCAAAGCTGCGGATGACTATACGAATCTTAGGCGGCTGCCATGCTTTGCCCACAGCCTGAACCAAATCGTGCAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3499#0 CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAA 60
consensus_3499#1 ------------------------------------------------------------
consensus_3499#0 TTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAA 120
consensus_3499#1 ------------------------------------------------------------
consensus_3499#0 AATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCAC 180
consensus_3499#1 -----------------------------------------------------------C 1
*
consensus_3499#0 CGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCG 240
consensus_3499#1 CGCCC---ACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATG-CGCTACTGC--TCG 55
** ** * * * ** * ** * * ***** *** * *** ***
consensus_3499#0 ATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACA 300
consensus_3499#1 TCTGGTA------CGAAGAGAAGCTGAAAACCGTTAAAGGCG--AACTGTTGGCTG---- 103
* ** ** * ** * ** *** * ** * ***
consensus_3499#0 TCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCC 360
consensus_3499#1 -CCAAATCGGTGGCTTTATCGTCGG--ATTACTGGACAAATAGTAGTACCAACACTCACT 160
** ** ***** ** * * * ***** * ***** ** *
consensus_3499#0 TGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCT 420
consensus_3499#1 ATATGGCCCTAACTGGACACTT-CATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTG 219
** * * * * * * * * * * * ** **
consensus_3499#0 AGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAAT 480
consensus_3499#1 GAATGCTCTGAAATTCC----AAGCGAT-TTTAGC--GAAGAAAACATCGCCCAATGGGT 272
** * ** * * * *** * * *** ** * **** * ** * *
consensus_3499#0 GACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGA--TTGAATTTATTTGCAACGAA 538
consensus_3499#1 TTCGAAGGTAATGAA--GCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAA 330
* * * ** * * **** ** ***** * ***** ***** ** **
consensus_3499#0 TATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAAC 598
consensus_3499#1 AATTCCCGCATGGCCAAAGCTGCGGATGACT--ATACGAATCTTAGGCGGCTGCCATG-C 387
*** * *** * * ** * ** * * * * *** * * * *
consensus_3499#0 TCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTAC 658
consensus_3499#1 TTTGCCCACAGCCTGAACCA-AATCGTGCAGGAA-------------------------- 420
* * * *** ** * * * * *** *
consensus_3499#0 GAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA 701
consensus_3499#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||