These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence [ATCNGGCACGAGGGGCTGCGGCTTCTCCACGCACACGGGCAGCGAAATGTCGAGAAAGTACTCATGCTGCGACGAGGTATGGTGGCAATCCTGGCAGGTGAGGGTCGACACGAGCGAGCCGCGGAACACCTGCTCCGGCCGGAACACCCACTGCGAGATCTGCTCGTTGTAGTACTTGGCCAGCGCGCGCTGCGTGCCGTCCGTGTTCTGCCGACTCTTGCGCGACTCCAGCCCGAGCTTTTGCAGTATCAGCGACTGGTAGCGCCGCAGATCGTCCGTGCGCACGCTCTCGAGCAGGTGCCGCAGCAGCTCGTGCGAGTCGTGCTGGTCTGCCCCCGTCAAACTGGGGCCACTTGCTGGTCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGGACTGNTTCAGAAATGTCGGACAGGGTAGGGTGTGCGGGGCGAGACACTGCTAGGGACCGCGTTTGAAGAAGCACGTGTTGCCGAGATTTGGACAGGGCCGGCACACGCGGGCAGCGCGGTCGATAAGGCTTTGGTCGGCGTGCGGGCACGAGGCTTGAGGACCGAATCTGGCCGGTCNGGCCGGCCTCGGGCCCCTTTCGGCGGCGCTCTTGGTTCGGNACGTTNATCGGCTNGAGTTAAA] [+] EMBL BX467605 [ATCNGGCACGAGGGGCTGCGGCTTCTCCACGCACACGGGCAGCGAAATGTCGAGAAAGTACTCATGCTGCGACGAGGTATGGTGGCAATCCTGGCAGGTGAGGGTCGACACGAGCGAGCCGCGGAACACCTGCTCCGGCCGGAACACCCACTGCGAGATCTGCTCGTTGTAGTACTTGGCCAGCGCGCGCTGCGTGCCGTCCGTGTTCTGCCGACTCTTGCGCGACTCCAGCCCGAGCTTTTGCAGTATCAGCGACTGGTAGCGCCGCAGATCGTCCGTGCGCACGCTCTCGAGCAGGTGCCGCAGCAGCTCGTGCGAGTCGTGCTGGTCTGCCCCCGTCAAACTGGGGCCACTTGCTGGTCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGGACTGNTTCAGAAATGTCGGACAGGGTAGGGTGTGCGGGGCGAGACACTGCTAGGGACCGCGTTTGAAGAAGCACGTGTTGCCGAGATTTGGACAGGGCCGGCACACGCGGGCAGCGCGGTCGATAAGGCTTTGGTCGGCGTGCGGGCACGAGGCTTGAGGACCGAATCTGGCCGGTCNGGCCGGCCTCGGGCCCCTTTCGGCGGCGCTCTTGGTTCGGNACGTTNATCGGCTNGAGTTAAA] [-] EMBL AGA285255 [ GCTCTCGAGCAGGTGCCGCAGCAGCTCGTGCGAGTCGTGCTGGTC GCCCCCGTCAAACTGGGGCCACTTGCTGGTCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGC GCCAGTATCTCCGT ] consensusID : consensus_3510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [CGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGACTGCTTCAGAATGTCGGACAGGTAGGGTGTGCGGGCGAGACACTGCAGGACCGCGTTGAAGAAGCACGTGTTGCCGAGATTGGACAGGCCGCGCACACGCGGCAGCGCGTCGATGAGGCTTTTGGTCGCGTGCGGCACGAGGCTGGAGGACGATGCGGCCGGTCCGGCCGCCTCGGGCCCCTTGCCGCGCGCGCTCTGCTCGTACGTTTGATCGCTGGAGTTAAACTTGGC] [-] EMBL AGA282635 [CGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGACTGCTTCAGAATGTCGGACAGGTAGGGTGTGCGGGCGAGACACTGCAGGACCGCGTTGAAGAAGCACGTGTTGCCGAGATTGGACAGGCCGCGCACACGCGGCAGCGCGTCGATGAGGCTTTTGGTCGCGTGCGGCACGAGGCTGGAGGACGATGCGGCCGGTCCGGCCGCCTCGGGCCCCTTGCCGCGCGCGCTCTGCTCGTACGTTTGATCGCTGGAGTTAAACTTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3510#0 ATCNGGCACGAGGGGCTGCGGCTTCTCCACGCACACGGGCAGCGAAATGTCGAGAAAGTA 60 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CTCATGCTGCGACGAGGTATGGTGGCAATCCTGGCAGGTGAGGGTCGACACGAGCGAGCC 120 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 GCGGAACACCTGCTCCGGCCGGAACACCCACTGCGAGATCTGCTCGTTGTAGTACTTGGC 180 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CAGCGCGCGCTGCGTGCCGTCCGTGTTCTGCCGACTCTTGCGCGACTCCAGCCCGAGCTT 240 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TTGCAGTATCAGCGACTGGTAGCGCCGCAGATCGTCCGTGCGCACGCTCTCGAGCAGGTG 300 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CCGCAGCAGCTCGTGCGAGTCGTGCTGGTCTGCCCCCGTCAAACTGGGGCCACTTGCTGG 360 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGG 420 consensus_3510#1 ------------------------------------CGGGCGCGTTCGCCTGCAGGTCGG 24 ************************ consensus_3510#0 TCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCG 480 consensus_3510#1 TCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCG 84 ************************************************************ consensus_3510#0 GGGGCGGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACC 540 consensus_3510#1 GGGGCG-CCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACC 143 ****** ***************************************************** consensus_3510#0 TTTTCGCCCTCGGTCGCCGGACTGNTTCAGAAATGTCGGACAGGGTAGGGTGTGCGGGGC 600 consensus_3510#1 TTTTCGCCCTCGGTCGCCG-ACTGCTTCAGAA-TGTCGGACAGG-TAGGGTGTGCGGG-C 199 ******************* **** ******* *********** ************* * consensus_3510#0 GAGACACTGCTAGGGACCGCGTTTGAAGAAGCACGTGTTGCCGAGATTTGGACAGGGCCG 660 consensus_3510#1 GAGACACTGC--AGGACCGCGTT-GAAGAAGCACGTGTTGCCGAGATT-GGACAGGCCGC 255 ********** ********** ************************ ******* * consensus_3510#0 GCACACGCGGGCAGCGCGGTCGATAAGGCTTTGGTCGGCGTGCGGGCACGAGGCTTGAGG 720 consensus_3510#1 GCACACGCGG-CAGCGCG-TCGATGAGGCTTTTGGTCGCGTGCGG-CACGAGGCTGGAGG 312 ********** ******* ***** ******* * ******** ********* **** consensus_3510#0 ACCGAATCTGGCCGGTCNGGCCGGCCTCGGGCCCCTTTCGGCGGCGCTCTTGGTTCGGNA 780 consensus_3510#1 AC--GATGCGGCCGGTCCGGCCG-CCTCGGGCCCCTTGCCGCG-CGCGCTCTGCTCG-TA 367 ** ** ******** ***** ************* * *** *** ** * *** * consensus_3510#0 CGTTNATCGGCTNGAGTTAAA------ 801 consensus_3510#1 CGTTTGATCGCTGGAGTTAAACTTGGC 394 **** *** ******** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||