cluster # 3524

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Anopheles gambiae
cluster # 3524 cluster # 3524 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3524#0 length = 794 sequences # 1

consensus_3524#1 length = 672 sequences # 2

consensusID : consensus_3524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence

                              [CCGCCCACGCGTCCGAAACAGTGCATTCCGATAATGCGATTTTTTGCATAATGCTTCAGTAAAGTACGCAAAAAGCAGGTGATAATTGTTAGTTTTCAATTCCCAGTTCGCTCACTTTTCTTTTGCTCGATCCAATCCAAACGTGGTGAGGGAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACAAGTGAAAGAGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATTATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAAGAATCGCCGATGCAATCGCTTGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGGCTGTCGAACGAGGGCAATGAGAAAAGTTCCCTGAGGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAATACTTTACGCCCGGCTGGTTTCTGCTCGAGAACACCATGCCCCCTCGTTCGAGGATCTGAAAGGCGGGTCTGTCC]

[+] EMBL BM617834             [CCGCCCACGCGTCCGAAACAGTGCATTCCGATAATGCGATTTTTTGCATAATGCTTCAGTAAAGTACGCAAAAAGCAGGTGATAATTGTTAGTTTTCAATTCCCAGTTCGCTCACTTTTCTTTTGCTCGATCCAATCCAAACGTGGTGAGGGAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACAAGTGAAAGAGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATTATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAAGAATCGCCGATGCAATCGCTTGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGGCTGTCGAACGAGGGCAATGAGAAAAGTTCCCTGAGGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAATACTTTACGCCCGGCTGGTTTCTGCTCGAGAACACCATGCCCCCTCGTTCGAGGATCTGAAAGGCGGGTCTGTCC]




>consensus_3524#0
CCGCCCACGCGTCCGAAACAGTGCATTCCGATAATGCGATTTTTTGCATAATGCTTCAGT
AAAGTACGCAAAAAGCAGGTGATAATTGTTAGTTTTCAATTCCCAGTTCGCTCACTTTTC
TTTTGCTCGATCCAATCCAAACGTGGTGAGGGAACATTCCCTGTGCACCATTGTTTTGGT
AAAGAAAACACAAGTGAAAGAGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAA
GGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGC
ACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTG
ACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAGATCATT
GCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATTATCGTGACGACACGCGGCGGCGGC
ACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAG
TCGGCCGTGTGGATCGAAGAATCGCCGATGCAATCGCTTGCCTGGGGCCGACGGTCCCTC
GCACCCACCGGCTACACGCAGGAAGATCCGCTCGGGCTGTCGAACGAGGGCAATGAGAAA
AGTTCCCTGAGGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAAT
ACTTTACGCCCGGCTGGTTTCTGCTCGAGAACACCATGCCCCCTCGTTCGAGGATCTGAA
AGGCGGGTCTGTCC

consensusID : consensus_3524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence

                              [CCGCAAGACGACCAAAACACTTCGCTTACTTTTCATTTGCTCGACCAACGTGGTGAGGAAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGCTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATCATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAGGAATCGCCGATGCAATCGCTCGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGCCTGTCGAACGAGGGCAATGAGAAAAAGTTCCCGGAAGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAAAACTTTACGCCCGGCTGGTTTCTGCTCGAGAACCACCAT]

[+] EMBL BM615045             [CCGCAAGACGACCAAAACACTTCGCTTACTTTTCATTTGCTCGACCAACGTGGTGAGGAAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGCTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATCATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAGGAATCGCCGATGCAATCGCTCGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGCCTGTCGAACGAGGGCAATGAGAAAAAGTTCCCGGAAGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAAAACTTTACGCCCGGCTGGTTTCTGCTCGAGAACCACCAT]
[+] EMBL AGA283040            [                                                           AACATTCGCTGTGCACCATTGTTTTGTTAAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGAGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGTACGGGAGCGGCCAAGGGCAAGGGTGACATCATCGTGACGACAC                                                                                                                                                                                                                                                                                                  ]




>consensus_3524#1
CCGCAAGACGACCAAAACACTTCGCTTACTTTTCATTTGCTCGACCAACGTGGTGAGGAA
ACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACTAGTGAAAGAGGCGTTGTGAAT
CATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTT
ACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTT
CTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGCTG
TCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAG
GGCGACATCATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGC
GCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAGGAATCGCCG
ATGCAATCGCTCGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGAT
CCGCTCGGCCTGTCGAACGAGGGCAATGAGAAAAAGTTCCCGGAAGATCTGCGCGACCTG
TTCCCGGACGGGTCGGGCGATCTGTCGCAGGAAAACTTTACGCCCGGCTGGTTTCTGCTC
GAGAACCACCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3524#0      CCGCCCACGCGTCCGAAACAGTGCATTCCGATAATGCGATTTTTTGCATAATGCTTCAGT 60
consensus_3524#1      ------------------------------------------------------------
                                                                                  

consensus_3524#0      AAAGTACGCAAAAAGCAGGTGATAATTGTTAGTTTTCAATTCCCAGTTCGCTCACTTTTC 120
consensus_3524#1      -------------------------CCGCAAGACGACCAAAAC-ACTTCGCTTACTTTTC 34
                                                 *  **    * *   * * ****** *******

consensus_3524#0      TTTTGCTCGATCCAATCCAAACGTGGTGAGGGAACATTCCCTGTGCACCATTGTTTTGGT 180
consensus_3524#1      ATTTGCTCGACC-------AACGTGGTGAGGAAACATTCCCTGTGCACCATTGTTTTGGT 87
                       ********* *       ************ ****************************

consensus_3524#0      AAAGAAAACACAAGTGAAAGAG------TGAATCATCTGATCAAGCGATAAAGAGCGACT 234
consensus_3524#1      AAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACT 147
                      *********** **********      ********************************

consensus_3524#0      GGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCA 294
consensus_3524#1      GGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCA 207
                      ************************************************************

consensus_3524#0      CCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATC 354
consensus_3524#1      CCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATC 267
                      ************************************************************

consensus_3524#0      GGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAG 414
consensus_3524#1      GGTCTGACCATCTGCGGTTGCGATTGTCTGCTGTCGGCGGAATGGAAATCGGACAAAAAG 327
                      ****************************** *****************************

consensus_3524#0      ATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATTATCGTGACGACACGCGGC 474
consensus_3524#1      ATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATCATCGTGACGACACGCGGC 387
                      ***************************************** ******************

consensus_3524#0      GGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATG 534
consensus_3524#1      GGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATG 447
                      ************************************************************

consensus_3524#0      AAGGAGTCGGCCGTGTGGATCGAAGAATCGCCGATGCAATCGCTTGCCTGGGGCCGACGG 594
consensus_3524#1      AAGGAGTCGGCCGTGTGGATCGAGGAATCGCCGATGCAATCGCTCGCCTGGGGCCGACGG 507
                      *********************** ******************** ***************

consensus_3524#0      TCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGGCTGTCGAACGAGGGCAAT 654
consensus_3524#1      TCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGCCTGTCGAACGAGGGCAAT 567
                      ***************************************** ******************

consensus_3524#0      GAGAAAA-GTTCCCTGAGGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCG 713
consensus_3524#1      GAGAAAAAGTTCCCGGAAGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCG 627
                      ******* ****** ** ******************************************

consensus_3524#0      CAGGAATACTTTACGCCCGGCTGGTTTCTGCTCGAGAAC-ACCATGCCCCCTCGTTCGAG 772
consensus_3524#1      CAGGAAAACTTTACGCCCGGCTGGTTTCTGCTCGAGAACCACCAT--------------- 672
                      ****** ******************************** *****               

consensus_3524#0      GATCTGAAAGGCGGGTCTGTCC 794
consensus_3524#1      ----------------------