These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [CCGCCCACGCGTCCGAAACAGTGCATTCCGATAATGCGATTTTTTGCATAATGCTTCAGTAAAGTACGCAAAAAGCAGGTGATAATTGTTAGTTTTCAATTCCCAGTTCGCTCACTTTTCTTTTGCTCGATCCAATCCAAACGTGGTGAGGGAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACAAGTGAAAGAGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATTATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAAGAATCGCCGATGCAATCGCTTGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGGCTGTCGAACGAGGGCAATGAGAAAAGTTCCCTGAGGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAATACTTTACGCCCGGCTGGTTTCTGCTCGAGAACACCATGCCCCCTCGTTCGAGGATCTGAAAGGCGGGTCTGTCC] [+] EMBL BM617834 [CCGCCCACGCGTCCGAAACAGTGCATTCCGATAATGCGATTTTTTGCATAATGCTTCAGTAAAGTACGCAAAAAGCAGGTGATAATTGTTAGTTTTCAATTCCCAGTTCGCTCACTTTTCTTTTGCTCGATCCAATCCAAACGTGGTGAGGGAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACAAGTGAAAGAGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATTATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAAGAATCGCCGATGCAATCGCTTGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGGCTGTCGAACGAGGGCAATGAGAAAAGTTCCCTGAGGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAATACTTTACGCCCGGCTGGTTTCTGCTCGAGAACACCATGCCCCCTCGTTCGAGGATCTGAAAGGCGGGTCTGTCC] consensusID : consensus_3524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [CCGCAAGACGACCAAAACACTTCGCTTACTTTTCATTTGCTCGACCAACGTGGTGAGGAAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGCTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATCATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAGGAATCGCCGATGCAATCGCTCGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGCCTGTCGAACGAGGGCAATGAGAAAAAGTTCCCGGAAGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAAAACTTTACGCCCGGCTGGTTTCTGCTCGAGAACCACCAT] [+] EMBL BM615045 [CCGCAAGACGACCAAAACACTTCGCTTACTTTTCATTTGCTCGACCAACGTGGTGAGGAAACATTCCCTGTGCACCATTGTTTTGGTAAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGCTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATCATCGTGACGACACGCGGCGGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATGAAGGAGTCGGCCGTGTGGATCGAGGAATCGCCGATGCAATCGCTCGCCTGGGGCCGACGGTCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGCCTGTCGAACGAGGGCAATGAGAAAAAGTTCCCGGAAGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCGCAGGAAAACTTTACGCCCGGCTGGTTTCTGCTCGAGAACCACCAT] [+] EMBL AGA283040 [ AACATTCGCTGTGCACCATTGTTTTGTTAAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACTGGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCACCCGGCACGCGGGTAACGATACGTGGAGAATTTCTCGGCAACAAGGCAACGGATCTGATCGGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAGATCATTGCCCGTACGGGAGCGGCCAAGGGCAAGGGTGACATCATCGTGACGACAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3524#0 CCGCCCACGCGTCCGAAACAGTGCATTCCGATAATGCGATTTTTTGCATAATGCTTCAGT 60 consensus_3524#1 ------------------------------------------------------------ consensus_3524#0 AAAGTACGCAAAAAGCAGGTGATAATTGTTAGTTTTCAATTCCCAGTTCGCTCACTTTTC 120 consensus_3524#1 -------------------------CCGCAAGACGACCAAAAC-ACTTCGCTTACTTTTC 34 * ** * * * * ****** ******* consensus_3524#0 TTTTGCTCGATCCAATCCAAACGTGGTGAGGGAACATTCCCTGTGCACCATTGTTTTGGT 180 consensus_3524#1 ATTTGCTCGACC-------AACGTGGTGAGGAAACATTCCCTGTGCACCATTGTTTTGGT 87 ********* * ************ **************************** consensus_3524#0 AAAGAAAACACAAGTGAAAGAG------TGAATCATCTGATCAAGCGATAAAGAGCGACT 234 consensus_3524#1 AAAGAAAACACTAGTGAAAGAGGCGTTGTGAATCATCTGATCAAGCGATAAAGAGCGACT 147 *********** ********** ******************************** consensus_3524#0 GGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCA 294 consensus_3524#1 GGATAAGGCACGATGGTGAAAAGCCCGGTTGTTACGGGCATTTCGCCCAAGGAAGGTCCA 207 ************************************************************ consensus_3524#0 CCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATC 354 consensus_3524#1 CCCGGCACGCGGGTAACGATACGTGGCGAATTTCTCGGCAACAAGGCAACGGATCTGATC 267 ************************************************************ consensus_3524#0 GGTCTGACCATCTGCGGTTGCGATTGTCTGTTGTCGGCGGAATGGAAATCGGACAAAAAG 414 consensus_3524#1 GGTCTGACCATCTGCGGTTGCGATTGTCTGCTGTCGGCGGAATGGAAATCGGACAAAAAG 327 ****************************** ***************************** consensus_3524#0 ATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATTATCGTGACGACACGCGGC 474 consensus_3524#1 ATCATTGCCCGCACGGGAGCGGCCAAGGGCAAGGGCGACATCATCGTGACGACACGCGGC 387 ***************************************** ****************** consensus_3524#0 GGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATG 534 consensus_3524#1 GGCGGCACGGGCACGTGCACGGTGCAGTTCCGCGCGTACTACGAAACGATCGGCCCGATG 447 ************************************************************ consensus_3524#0 AAGGAGTCGGCCGTGTGGATCGAAGAATCGCCGATGCAATCGCTTGCCTGGGGCCGACGG 594 consensus_3524#1 AAGGAGTCGGCCGTGTGGATCGAGGAATCGCCGATGCAATCGCTCGCCTGGGGCCGACGG 507 *********************** ******************** *************** consensus_3524#0 TCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGGCTGTCGAACGAGGGCAAT 654 consensus_3524#1 TCCCTCGCACCCACCGGCTACACGCAGGAAGATCCGCTCGGCCTGTCGAACGAGGGCAAT 567 ***************************************** ****************** consensus_3524#0 GAGAAAA-GTTCCCTGAGGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCG 713 consensus_3524#1 GAGAAAAAGTTCCCGGAAGATCTGCGCGACCTGTTCCCGGACGGGTCGGGCGATCTGTCG 627 ******* ****** ** ****************************************** consensus_3524#0 CAGGAATACTTTACGCCCGGCTGGTTTCTGCTCGAGAAC-ACCATGCCCCCTCGTTCGAG 772 consensus_3524#1 CAGGAAAACTTTACGCCCGGCTGGTTTCTGCTCGAGAACCACCAT--------------- 672 ****** ******************************** ***** consensus_3524#0 GATCTGAAAGGCGGGTCTGTCC 794 consensus_3524#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||